study batch sample biology HLA PXD028309 Colo208_TMT_10M_040920_1.raw Colo205_colon_4TMT "A*01:01,A*02:01,B*07:02,B*08:01,C*07:01,C*07:02" PXD028309 HCT116_TMT_10M_040920_1.raw HCT116_colon_4TMT "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" PXD028309 RKO_TMT_10M_040920_1.raw RKO_colon_4TMT "A*03:01,B*18:01,C*07:01" PXD028309 CRC_026075T_TMT_200720_1.raw S4_T_KRAS_G12D_MSS_colon_2TMT "A*11:01,A*01:01,B*15:01,B*57:01,C*03:03,C*06:02" PXD028309 CRC_026019T_TMT_200720_1.raw S6_T_MSI_colon_2TMT "A*23:01,A*03:01,B*07:02,B*18:01,C*07:02,C*07:01" PXD028309 CRC_026250T_TMT_200720_1.raw S1_T_KRAS_G12D_MSS_colon_2TMT "A*24:02,B*35:01,B*07:02,C*04:01,C*07:02" PXD028309 CRC_026241T_TMT_200720_1.raw S2_T_MSS_colon_2TMT "A*03:02,A*02:01,B*27:05,B*58:01,C*02:02,C*07:01" PXD028309 CRC_026240T_TMT_200720_1.raw S5_T_MSI_colon_2TMT "A*30:01,A*03:01,B*13:02,B*52:01,C*12:02,C*06:02" PXD028309 CRC_026214T_TMT_200720_1.raw S3_T_KRAS_Q61H_MSS_colon_2TMT "A*32:01,A*01:01,B*38:01,B*50:01,C*12:03,C*06:02" PXD028309 SW620_TMT_10M_040920_1.raw SW620_colorectal_4TMT "A*02:01,A*24:02,B*07:02,B*15:18,C*07:02,C*07:04" PXD014017 batch1 20170708_QEh1_LC1_ChCh_SA_HLAIp_CRC-01_1_R1.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch1 20170708_QEh1_LC1_ChCh_SA_HLAIp_CRC-01_1_R2.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch1 20170708_QEh1_LC1_ChCh_SA_HLAIp_CRC-05_1_R1.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch1 20170708_QEh1_LC1_ChCh_SA_HLAIp_CRC-05_1_R2.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch1 20170708_QEh1_LC1_ChCh_SA_HLAIp_CRC-08_1_R1.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch1 20170708_QEh1_LC1_ChCh_SA_HLAIp_CRC-08_1_R2.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-01_R1.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-01_R2.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-04_1_R1.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-04_1_R2.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-04_2_R1.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-04_2_R2.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-04_3_R1.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-04_3_R2.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-05_R1.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-05_R2.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-08_1_R1.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-08_1_R2.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-08_2_R1.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch1 20171107_QEh1_LC1_HLApI_SA_JMI_CRC-08_2_R2.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_CRC-03_1_R1.raw CRC-03 "A*02:01,A*29:02,B*15:01,B*44:03,C*03:04,C*16:01" PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_CRC-03_1_R2.raw CRC-03 "A*02:01,A*29:02,B*15:01,B*44:03,C*03:04,C*16:01" PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_CRC-03_2_R1.raw CRC-03 "A*02:01,A*29:02,B*15:01,B*44:03,C*03:04,C*16:01" PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_CRC-03_2_R2.raw CRC-03 "A*02:01,A*29:02,B*15:01,B*44:03,C*03:04,C*16:01" PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_CRC-03_3_R1.raw CRC-03 "A*02:01,A*29:02,B*15:01,B*44:03,C*03:04,C*16:01" PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_CRC-03_3_R2.raw CRC-03 "A*02:01,A*29:02,B*15:01,B*44:03,C*03:04,C*16:01" PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_PDX146_1_R1.raw PDX146 PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_PDX146_1_R2.raw PDX146 PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_PDX146_2_R1.raw PDX146 PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_PDX146_2_R2.raw PDX146 PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_PDX146_3_R1.raw PDX146 PXD014017 batch2 20171109_QEh1_LC1_HLApI_SA_JMI_PDX146_3_R2.raw PDX146 PXD014017 batch2 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN1_R01.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch2 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN1_R02.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch2 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN2_R01.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch2 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN2_R02.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch2 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN3_R01.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch2 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN3_R02.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch2 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN4_R01.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch2 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN4_R02.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN5_2ndC-18_R01.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN5_2ndC-18_R02.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM1_R01.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM1_R02.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM2_R01.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM2_R02.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM3_R01.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM3_R02.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM4_R01.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM4_R02.raw CRC-01 "A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02" PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN1_R01.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN1_R02.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN2_R01.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN2_R02.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN3_R01.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN3_R02.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN4_R01.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN4_R02.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN5_R01.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN5_R02.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN6_R01.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN6_R02.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM1_R01.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM1_R02.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM2_R01.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM2_R02.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM3_R01.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM3_R02.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM4_R01.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM4_R02.raw CRC-08 "A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01" PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN1_R01.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN1_R02.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN2_R01.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN2_R02.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN3_R01.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN3_R02.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN4_R01.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN4_R02.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch4 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM1_R01.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch4 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM1_R02.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM2_R01.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM2_R02.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM3_R01.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM3_R02.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM4_R01.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM4_R02.raw CRC-04 "A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN1_R01.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN1_R02.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN2_R01.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN2_R02.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN3_R01.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN3_R02.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM1_R01.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM1_R02.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM2_R01.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM2_R02.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM3_R01.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM3_R02.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM4_R01.raw CRC-05 "A*32:01,B*40:01,C*03:04" PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM4_R02.raw CRC-05 "A*32:01,B*40:01,C*03:04" MSV000087927 HCT116MG_D190212_S1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" MSV000087927 HCT116MG_D190212_S2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" MSV000087927 HCT116MG_D190212_S3.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" MSV000087927 HCT116MG_D190212_S4.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" PXD000394 20120515_EXQ3_MiBa_SA_HCT116_mHLA-1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" PXD000394 20120518_EXQ0_MiBa_SA_HCT116_mHLA-2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" PXD000394 20120617_EXQ0_MiBa_SA_HCT116_1_mHLA_2hr.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" PXD000394 20120619_EXQ6_MiBa_SA_HCT116_2_mHLA_2hr.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lara_190212_P0814_MR_JB_HA1_HCD_R1.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lara_190212_P0814_MR_JB_HA2_HCD_R1.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lara_190212_P0814_MR_JB_HA3_HCD_R1.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lara_190212_P0814_MR_JB_HD1_HCD_R1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lara_190212_P0814_MR_JB_HD2_HCD_R1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lara_190212_P0814_MR_JB_HD3_HCD_R1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190208_P0814_MR_JB_HA1_HCD_R1.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190208_P0814_MR_JB_HA2_HCD_R1.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190208_P0814_MR_JB_HA3_HCD_R1.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190208_P0814_MR_JB_HD1_HCD_R1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190208_P0814_MR_JB_HD2_HCD_R1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190208_P0814_MR_JB_HD3_HCD_R1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190217_P0814_MR_JB_HA1_EThcD_R1.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190217_P0814_MR_JB_HD1_EThcD_R1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190217_P0814_MR_JB_HD2_EThcD_R1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190217_P0814_MR_JB_HD3_EThcD_R2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190225_P0814_MR_JB_HA1_lowEThcD_R1.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190225_P0814_MR_JB_HA2_EThcD_R2.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190225_P0814_MR_JB_HA2_lowEThcD_R1.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch1 Lumos_190225_P0814_MR_JB_HA3_EThcD_R2.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch2 Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1.raw HCT 116 5AZA "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch2 Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch2 Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD021755 batch2 Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD037587 171219_MG_HROC113_IFNy_W6_DDA_Rep1_400-650mz_msms36.raw HROC113_IFNy "A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03" phase2_PXD037587 171219_MG_HROC113_IFNy_W6_DDA_Rep2_400-650mz_msms37.raw HROC113_IFNy "A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03" phase2_PXD037587 171219_MG_HROC113_IFNy_W6_DDA_Rep3_400-650mz_msms38.raw HROC113_IFNy "A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03" phase2_PXD037587 171219_MG_HROC113_untreated_W6_DDA_Rep1_400-650mz_msms23.raw HROC113 "A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03" phase2_PXD037587 171219_MG_HROC113_untreated_W6_DDA_Rep1new_400-650mz_msms28.raw HROC113 "A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03" phase2_PXD037587 171219_MG_HROC113_untreated_W6_DDA_Rep2_400-650mz_msms29.raw HROC113 "A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03" phase2_PXD037587 171219_MG_HROC113_untreated_W6_DDA_Rep3_400-650mz_msms30.raw HROC113 "A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03" phase2_PXD037587 171219_MG_HROC285_IFNy_W6_DDA_Rep1_400-650mz_msms15.raw HROC285_IFNy "A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01" phase2_PXD037587 171219_MG_HROC285_IFNy_W6_DDA_Rep2_400-650mz_msms16.raw HROC285_IFNy "A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01" phase2_PXD037587 171219_MG_HROC285_IFNy_W6_DDA_Rep3_400-650mz_msms17.raw HROC285_IFNy "A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01" phase2_PXD037587 171219_MG_HROC285_untreated_W6_DDA_Rep1_400-650mz_msms7.raw HROC285 "A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01" phase2_PXD037587 171219_MG_HROC285_untreated_W6_DDA_Rep2_400-650mz_msms8.raw HROC285 "A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01" phase2_PXD037587 171219_MG_HROC285_untreated_W6_DDA_Rep3_400-650mz_msms9.raw HROC285 "A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01" phase2_PXD026573_JPST001211 ST239_CRC09_A24.raw CRC09_pMMR A*24:02 phase2_PXD026573_JPST001211 ST467_CRC54_A24.raw CRC54_pMMR A*24:02 phase2_PXD026573_JPST001211 ST468_CRC57_A24.raw CRC57_pMMR A*24:02 phase2_PXD026573_JPST001211 ST469_CRC59_A24.raw CRC59_pMMR A*24:02 phase2_PXD026573_JPST001211 ST547_CRC111_1_A24.raw CRC111_dMMR A*24:02 phase2_PXD024533_JPST001104 ST503_Colo320_A24.raw Colo320 A*24:02 phase2_PXD024533_JPST001104 ST419_CRC71_A24.raw CRC71 A*24:02 phase2_PXD024533_JPST001104 ST544_CRC117_A24.raw CRC117 A*24:02 phase2_PXD024533_JPST001104 ST545_CRC113_A24.raw CRC113 A*24:02 phase2_PXD024533_JPST001104 ST546_CRC114_A24.raw CRC114 A*24:02 phase2_PXD024533_JPST001104 ST600_CRC123_A24.raw CRC123 A*24:02 phase2_PXD024533_JPST001104 ST594_CRC125_A24.raw CRC125 A*24:02 phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone1-IP1.raw CRC_PDO_hetero_T1 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone1-IP2.raw CRC_PDO_hetero_T1 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone1-IP3.raw CRC_PDO_hetero_T1 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone3-IP1.raw CRC_PDO_hetero_T3 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone3-IP2.raw CRC_PDO_hetero_T3 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone3-IP3.raw CRC_PDO_hetero_T3 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone4-IP1.raw CRC_PDO_hetero_T4 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone4-IP2.raw CRC_PDO_hetero_T4 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone4-IP3.raw CRC_PDO_hetero_T4 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone5-IP1-goodmethod.raw CRC_PDO_hetero_T5 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone5-IP2.raw CRC_PDO_hetero_T5 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone5-IP3.raw CRC_PDO_hetero_T5 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone1-IP1.raw CRC_PDO_hetero_T1 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone1-IP2.raw CRC_PDO_hetero_T1 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone1-IP3.raw CRC_PDO_hetero_T1 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone3-IP1.raw CRC_PDO_hetero_T3 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone3-IP2.raw CRC_PDO_hetero_T3 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone3-IP3.raw CRC_PDO_hetero_T3 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone4-IP1.raw CRC_PDO_hetero_T4 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone4-IP2.raw CRC_PDO_hetero_T4 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone4-IP3.raw CRC_PDO_hetero_T4 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone5-IP1.raw CRC_PDO_hetero_T5 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone5-IP2.raw CRC_PDO_hetero_T5 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone5-IP3.raw CRC_PDO_hetero_T5 "A*02:01,B*15:01,B*57:01,C*03:04,C*06:02" phase2_PXD015947 IRISS01_Tumor_HLAclassIW6-32_Rep1.raw IRISS01 "A*24:02,A*66:01,B*27:01,B*44:02" phase2_PXD015947 IRISS01_Tumor_HLAclassIW6-32_Rep2.raw IRISS01 "A*24:02,A*66:01,B*27:01,B*44:02" phase2_PXD015947 IRISS01_Tumor_HLAclassIW6-32_Rep3.raw IRISS01 "A*24:02,A*66:01,B*27:01,B*44:02" phase2_PXD015947 IRISS01_Tumor_HLAclassIW6-32_Rep4.raw IRISS01 "A*24:02,A*66:01,B*27:01,B*44:02" phase2_PXD015947 IRISS01_Tumor_HLAclassIW6-32_Rep5.raw IRISS01 "A*24:02,A*66:01,B*27:01,B*44:02" phase2_PXD015947 IRISS05_Tumor_HLAclassIW6-32_Rep1.raw IRISS05 "A*01:01,A*02:01,B*08:01,B*18:01" phase2_PXD015947 IRISS05_Tumor_HLAclassIW6-32_Rep2.raw IRISS05 "A*01:01,A*02:01,B*08:01,B*18:01" phase2_PXD015947 IRISS05_Tumor_HLAclassIW6-32_Rep3.raw IRISS05 "A*01:01,A*02:01,B*08:01,B*18:01" phase2_PXD015947 IRISS06_Tumor_HLAclassIW6-32_Rep1.raw IRISS06 "A*02:01,A*24:02,B*15:01,B*35:01" phase2_PXD015947 IRISS06_Tumor_HLAclassIW6-32_Rep2.raw IRISS06 "A*02:01,A*24:02,B*15:01,B*35:01" phase2_PXD015947 IRISS06_Tumor_HLAclassIW6-32_Rep3.raw IRISS06 "A*02:01,A*24:02,B*15:01,B*35:01" phase2_PXD015947 IRISS08_Tumor_HLAclassIW6-32_Rep1.raw IRISS08 "A*02:01,A*33:01,B*14:01,B*18:01" phase2_PXD015947 IRISS08_Tumor_HLAclassIW6-32_Rep2.raw IRISS08 "A*02:01,A*33:01,B*14:01,B*18:01" phase2_PXD015947 IRISS08_Tumor_HLAclassIW6-32_Rep3.raw IRISS08 "A*02:01,A*33:01,B*14:01,B*18:01" phase2_PXD015947 IRISS09_Tumor_HLAclassIW6-32_Rep1.raw IRISS09 "A*01:01,B*08:01" phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep1.raw IRISS12 "A*01:01,A*02:01,B*08:01,B*27:01" phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep2.raw IRISS12 "A*01:01,A*02:01,B*08:01,B*27:01" phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep3.raw IRISS12 "A*01:01,A*02:01,B*08:01,B*27:01" phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep4.raw IRISS12 "A*01:01,A*02:01,B*08:01,B*27:01" phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep5.raw IRISS12 "A*01:01,A*02:01,B*08:01,B*27:01" phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep6.raw IRISS12 "A*01:01,A*02:01,B*08:01,B*27:01" phase2_PXD023770_JPST001072 191206_HCT116_HLAp_1ul_Replicate1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023770_JPST001072 191206_HCT116_HLAp_1ul_Replicate2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023770_JPST001072 191206_HCT116_HLAp_1ul_Replicate3.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023770_JPST001072 191206_HCT116_HLAp_2ul_Raplicate3.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023770_JPST001072 191206_HCT116_HLAp_2ul_Replicate1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023770_JPST001072 191206_HCT116_HLAp_2ul_Replicate2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023770_JPST001072 191206_HCT116_HLAp_3ul_Replicate1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023770_JPST001072 191206_HCT116_HLAp_3ul_Replicate2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023770_JPST001072 191206_HCT116_HLAp_3ul_Replicate3.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_1ul_CVSet1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_1ul_CVSet2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_1ul_CVSet3.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_2ul_CVSet1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_2ul_CVSet2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_2ul_CVSet3.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_3ul_CVSet1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_3ul_CVSet2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_3ul_CVSet3.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023773_JPST001068_faims 200205_HCT116_5ul_CVSet1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023773_JPST001068_faims 200205_HCT116_5ul_CVSet2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023773_JPST001068_faims 200205_HCT116_5ul_CVSet3.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023773_JPST001068_faims 200714_HCT116_1ul_CVSet1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023773_JPST001068_faims 200714_HCT116_1ul_CVSet2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023773_JPST001068_faims 200714_HCT116_1ul_CVSet3.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023773_JPST001068_faims 200715_HCT116_5ul_CVSet1.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023773_JPST001068_faims 200715_HCT116_5ul_CVSet2.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023773_JPST001068_faims 200715_HCT116_5ul_CVSet3.raw HCT 116 "A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_51T.raw 51T "A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_51T.raw 51T "A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_51T.raw 51T "A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_51T.raw 51T "A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_51T.raw 51T "A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_51T.raw 51T "A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_60T.raw 60T "A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_60T.raw 60T "A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_60T.raw 60T "A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_60T.raw 60T "A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_60T.raw 60T "A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_60T.raw 60T "A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_78T.raw 78T "A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_78T.raw 78T "A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_78T.raw 78T "A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_78T.raw 78T "A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_78T.raw 78T "A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_78T.raw 78T "A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_84T.raw 84T_KRAS_G13D "A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_84T.raw 84T_KRAS_G13D "A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_84T.raw 84T_KRAS_G13D "A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_84T.raw 84T_KRAS_G13D "A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_84T.raw 84T_KRAS_G13D "A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_84T.raw 84T_KRAS_G13D "A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_103T.raw 103T_KRAS_G12V "A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_103T.raw 103T_KRAS_G12V "A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_103T.raw 103T_KRAS_G12V "A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_103T.raw 103T_KRAS_G12V "A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_103T.raw 103T_KRAS_G12V "A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_103T.raw 103T_KRAS_G12V "A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_107T.raw 107T_KRAS_G12D "A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_107T.raw 107T_KRAS_G12D "A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_107T.raw 107T_KRAS_G12D "A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_107T.raw 107T_KRAS_G12D "A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_107T.raw 107T_KRAS_G12D "A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_107T.raw 107T_KRAS_G12D "A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_112T.raw 112T_KRAS_G12D "A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_Approx4ul_112T.raw 112T_KRAS_G12D "A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_112T.raw 112T_KRAS_G12D "A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_Approx4ul_112T.raw 112T_KRAS_G12D "A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_112T.raw 112T_KRAS_G12D "A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_Approx4ul_112T.raw 112T_KRAS_G12D "A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_119T.raw 119T_KRAS_G13D "A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_119T.raw 119T_KRAS_G13D "A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_119T.raw 119T_KRAS_G13D "A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_119T.raw 119T_KRAS_G13D "A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_119T.raw 119T_KRAS_G13D "A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_119T.raw 119T_KRAS_G13D "A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T.raw 172T_KRAS_G12V "A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T.raw 172T_KRAS_G12V "A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T.raw 172T_KRAS_G12V "A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T.raw 172T_KRAS_G12V "A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T.raw 172T_KRAS_G12V "A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T.raw 172T_KRAS_G12V "A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_229T.raw 229T "A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_229T.raw 229T "A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_229T.raw 229T "A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_229T.raw 229T "A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_229T.raw 229T "A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_229T.raw 229T "A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_241T.raw 241T "A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_241T.raw 241T "A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_241T.raw 241T "A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_241T.raw 241T "A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_241T.raw 241T "A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_241T.raw 241T "A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_256T.raw 256T_KRAS_G12D "A*02:01,A*02:06,B*35:01,B*38:02,C*03:03,C*07:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_256T.raw 256T_KRAS_G12D "A*02:01,A*02:06,B*35:01,B*38:02,C*03:03,C*07:02" phase2_PXD023805_JPST001069_faims 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phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_257T.raw 257T_KRAS_G12V "A*02:01,A*24:02,B*15:01,B*52:01,C*03:03,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_257T.raw 257T_KRAS_G12V "A*02:01,A*24:02,B*15:01,B*52:01,C*03:03,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_257T.raw 257T_KRAS_G12V "A*02:01,A*24:02,B*15:01,B*52:01,C*03:03,C*12:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_258T.raw 258T_KRAS_G12D "A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_258T.raw 258T_KRAS_G12D "A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_258T.raw 258T_KRAS_G12D "A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_258T.raw 258T_KRAS_G12D "A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_258T.raw 258T_KRAS_G12D "A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_258T.raw 258T_KRAS_G12D "A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03" phase2_PXD023805_JPST001069_faims 200714_Lumos_FAIMS_CID_IT_CVSet1_1ul_259HT1.raw 259HT1 "A*02:01,A*02:01,B*44:02,B*55:02,C*01:02,C*05:01" phase2_PXD023805_JPST001069_faims 200714_Lumos_FAIMS_CID_IT_CVSet2_1ul_259HT1.raw 259HT1 "A*02:01,A*02:01,B*44:02,B*55:02,C*01:02,C*05:01" phase2_PXD023805_JPST001069_faims 200714_Lumos_FAIMS_CID_IT_CVSet3_1ul_259HT1.raw 259HT1 "A*02:01,A*02:01,B*44:02,B*55:02,C*01:02,C*05:01" phase2_PXD023805_JPST001069_faims 200715_Lumos_FAIMS_CID_IT_CVSet1_5ul_259HT1.raw 259HT1 "A*02:01,A*02:01,B*44:02,B*55:02,C*01:02,C*05:01" phase2_PXD023805_JPST001069_faims 200715_Lumos_FAIMS_CID_IT_CVSet2_5ul_259HT1.raw 259HT1 "A*02:01,A*02:01,B*44:02,B*55:02,C*01:02,C*05:01" phase2_PXD023805_JPST001069_faims 200715_Lumos_FAIMS_CID_IT_CVSet3_5ul_259HT1.raw 259HT1 "A*02:01,A*02:01,B*44:02,B*55:02,C*01:02,C*05:01" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_260T.raw 260T "A*02:07,A*24:02,B*46:01,B*54:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_260T.raw 260T "A*02:07,A*24:02,B*46:01,B*54:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_260T.raw 260T "A*02:07,A*24:02,B*46:01,B*54:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_260T.raw 260T "A*02:07,A*24:02,B*46:01,B*54:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_260T.raw 260T "A*02:07,A*24:02,B*46:01,B*54:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_260T.raw 260T "A*02:07,A*24:02,B*46:01,B*54:01,C*01:02,C*01:02" phase2_PXD023805_JPST001069_faims 200714_Lumos_FAIMS_CID_IT_CVSet1_1ul_261HT.raw 261HT_KRAS_G12A "A*11:01,A*24:02,B*13:01,B*52:01,C*07:02,C*12:02" phase2_PXD023805_JPST001069_faims 200714_Lumos_FAIMS_CID_IT_CVSet2_1ul_261HT.raw 261HT_KRAS_G12A "A*11:01,A*24:02,B*13:01,B*52:01,C*07:02,C*12:02" phase2_PXD023805_JPST001069_faims 200714_Lumos_FAIMS_CID_IT_CVSet3_1ul_261HT.raw 261HT_KRAS_G12A "A*11:01,A*24:02,B*13:01,B*52:01,C*07:02,C*12:02" phase2_PXD023805_JPST001069_faims 200715_Lumos_FAIMS_CID_IT_CVSet1_5ul_261HT.raw 261HT_KRAS_G12A "A*11:01,A*24:02,B*13:01,B*52:01,C*07:02,C*12:02" phase2_PXD023805_JPST001069_faims 200715_Lumos_FAIMS_CID_IT_CVSet2_5ul_261HT.raw 261HT_KRAS_G12A "A*11:01,A*24:02,B*13:01,B*52:01,C*07:02,C*12:02" phase2_PXD023805_JPST001069_faims 200715_Lumos_FAIMS_CID_IT_CVSet3_5ul_261HT.raw 261HT_KRAS_G12A "A*11:01,A*24:02,B*13:01,B*52:01,C*07:02,C*12:02" phase2_PXD033351 H716.massspec.MHC1pulldown.R1.raw NCI-H716 "A*01:01,B*08:01,C*07:01" phase2_PXD033351 H716.massspec.MHC1pulldown.R2.raw NCI-H716 "A*01:01,B*08:01,C*07:01" phase2_PXD033351 H716.massspec.MHC1pulldown.R3.raw NCI-H716 "A*01:01,B*08:01,C*07:01" phase2_PXD033351 H716.massspec.MHC1pulldown.R4.raw NCI-H716 "A*01:01,B*08:01,C*07:01" phase2_PXD033351 H716.massspec.MHC1pulldown.R5.raw NCI-H716 "A*01:01,B*08:01,C*07:01" phase2_PXD038165 0520_6_1_Slot1-24_1_4039.d CACO-2 "A*02:01,B*15:01,C*04:01"