study batch sample biology HLA PXD033383_OPSCC batch1 OPSCC_01_ClassI_Rep-1.raw p1_hpv_p PXD033383_OPSCC batch1 OPSCC_01_ClassI_Rep-2.raw p1_hpv_p PXD033383_OPSCC batch1 OPSCC_01_ClassI_Rep-3.raw p1_hpv_p PXD033383_OPSCC batch1 OPSCC_02_ClassI_Rep-1.raw p2_hpv_p PXD033383_OPSCC batch1 OPSCC_02_ClassI_Rep-2.raw p2_hpv_p PXD033383_OPSCC batch1 OPSCC_02_ClassI_Rep-3.raw p2_hpv_p PXD033383_OPSCC batch1 OPSCC_03_ClassI_Rep-1.raw p3_hpv_n PXD033383_OPSCC batch1 OPSCC_03_ClassI_Rep-2.raw p3_hpv_n PXD033383_OPSCC batch1 OPSCC_03_ClassI_Rep-3.raw p3_hpv_n PXD033383_OPSCC batch1 OPSCC_04_ClassI_Rep-1.raw p4_hpv_n PXD033383_OPSCC batch1 OPSCC_04_ClassI_Rep-2.raw p4_hpv_n PXD033383_OPSCC batch1 OPSCC_04_ClassI_Rep-3.raw p4_hpv_n PXD033383_OPSCC batch1 OPSCC_05_ClassI_Rep-1.raw p5_hpv_n PXD033383_OPSCC batch1 OPSCC_05_ClassI_Rep-2.raw p5_hpv_n PXD033383_OPSCC batch1 OPSCC_05_ClassI_Rep-3.raw p5_hpv_n PXD033383_OPSCC batch1 OPSCC_06_ClassI_Rep-1.raw p6_hpv_n PXD033383_OPSCC batch1 OPSCC_06_ClassI_Rep-2.raw p6_hpv_n PXD033383_OPSCC batch1 OPSCC_06_ClassI_Rep-3.raw p6_hpv_n PXD033383_OPSCC batch1 OPSCC_07_ClassI_Rep-1.raw p7_hpv_p PXD033383_OPSCC batch1 OPSCC_07_ClassI_Rep-2.raw p7_hpv_p PXD033383_OPSCC batch2 OPSCC_07_ClassI_Rep-3.raw p7_hpv_p PXD033383_OPSCC batch2 OPSCC_08_ClassI_Rep-1.raw p8_hpv_p PXD033383_OPSCC batch2 OPSCC_08_ClassI_Rep-2.raw p8_hpv_p PXD033383_OPSCC batch2 OPSCC_08_ClassI_Rep-3.raw p8_hpv_p PXD033383_OPSCC batch2 OPSCC_09_ClassI_Rep-1.raw p9_hpv_p PXD033383_OPSCC batch2 OPSCC_09_ClassI_Rep-2.raw p9_hpv_p PXD033383_OPSCC batch2 OPSCC_09_ClassI_Rep-3.raw p9_hpv_p PXD033383_OPSCC batch2 OPSCC_10_ClassI_Rep-1.raw p10_hpv_n PXD033383_OPSCC batch2 OPSCC_10_ClassI_Rep-2.raw p10_hpv_n PXD033383_OPSCC batch2 OPSCC_10_ClassI_Rep-3.raw p10_hpv_n PXD033383_OPSCC batch2 OPSCC_11_ClassI_Rep-1.raw p11_hpv_p PXD033383_OPSCC batch2 OPSCC_11_ClassI_Rep-2.raw p11_hpv_p PXD033383_OPSCC batch2 OPSCC_11_ClassI_Rep-3.raw p11_hpv_p PXD033383_OPSCC batch2 OPSCC_12_ClassI_Rep-1.raw p12_hpv_p PXD033383_OPSCC batch2 OPSCC_12_ClassI_Rep-2.raw p12_hpv_p PXD033383_OPSCC batch2 OPSCC_12_ClassI_Rep-3.raw p12_hpv_p PXD033383_OPSCC batch2 OPSCC_13_ClassI_Rep-1.raw p13_hpv_p PXD033383_OPSCC batch2 OPSCC_13_ClassI_Rep-2.raw p13_hpv_p PXD033383_OPSCC batch2 OPSCC_13_ClassI_Rep-3.raw p13_hpv_p PXD033383_OPSCC batch2 OPSCC_14_ClassI_Rep-1.raw p14_hpv_p PXD033383_OPSCC batch3 OPSCC_14_ClassI_Rep-2.raw p14_hpv_p PXD033383_OPSCC batch3 OPSCC_14_ClassI_Rep-3.raw p14_hpv_p PXD033383_OPSCC batch3 OPSCC_15_ClassI_Rep-1.raw p15_hpv_n PXD033383_OPSCC batch3 OPSCC_15_ClassI_Rep-2.raw p15_hpv_n PXD033383_OPSCC batch3 OPSCC_15_ClassI_Rep-3.raw p15_hpv_n PXD033383_OPSCC batch3 OPSCC_16_ClassI_Rep-1.raw p16_hpv_p PXD033383_OPSCC batch3 OPSCC_16_ClassI_Rep-2.raw p16_hpv_p PXD033383_OPSCC batch3 OPSCC_16_ClassI_Rep-3.raw p16_hpv_p PXD033383_OPSCC batch3 OPSCC_17_ClassI_Rep-1.raw p17_hpv_p PXD033383_OPSCC batch3 OPSCC_17_ClassI_Rep-2.raw p17_hpv_p PXD033383_OPSCC batch3 OPSCC_17_ClassI_Rep-3.raw p17_hpv_p PXD033383_OPSCC batch3 OPSCC_18_ClassI_Rep-1.raw p18_hpv_n PXD033383_OPSCC batch3 OPSCC_18_ClassI_Rep-2.raw p18_hpv_n PXD033383_OPSCC batch3 OPSCC_18_ClassI_Rep-3.raw p18_hpv_n PXD033383_OPSCC batch3 OPSCC_19_ClassI_Rep-1.raw p19_hpv_p PXD033383_OPSCC batch3 OPSCC_19_ClassI_Rep-2.raw p19_hpv_p PXD033383_OPSCC batch3 OPSCC_19_ClassI_Rep-3.raw p19_hpv_p PXD033383_OPSCC batch3 OPSCC_20_ClassI_Rep-1.raw p20_hpv_n PXD033383_OPSCC batch3 OPSCC_20_ClassI_Rep-2.raw p20_hpv_n PXD033383_OPSCC batch3 OPSCC_20_ClassI_Rep-3.raw p20_hpv_n PXD033383_OPSCC batch4 OPSCC_21_ClassI_Rep-1.raw p21_hpv_n PXD033383_OPSCC batch4 OPSCC_21_ClassI_Rep-2.raw p21_hpv_n PXD033383_OPSCC batch4 OPSCC_21_ClassI_Rep-3.raw p21_hpv_n PXD033383_OPSCC batch4 OPSCC_22_ClassI_Rep-1.raw p22_hpv_p PXD033383_OPSCC batch4 OPSCC_22_ClassI_Rep-2.raw p22_hpv_p PXD033383_OPSCC batch4 OPSCC_22_ClassI_Rep-3.raw p22_hpv_p PXD033383_OPSCC batch4 OPSCC_23_ClassI_Rep-1.raw p23_hpv_n PXD033383_OPSCC batch4 OPSCC_23_ClassI_Rep-2.raw p23_hpv_n PXD033383_OPSCC batch4 OPSCC_23_ClassI_Rep-3.raw p23_hpv_n PXD033383_OPSCC batch4 OPSCC_24_ClassI_Rep-1.raw p24_hpv_p PXD033383_OPSCC batch4 OPSCC_24_ClassI_Rep-2.raw p24_hpv_p PXD033383_OPSCC batch4 OPSCC_24_ClassI_Rep-3.raw p24_hpv_p PXD033383_OPSCC batch4 OPSCC_25_ClassI_Rep-1.raw p25_hpv_p PXD033383_OPSCC batch4 OPSCC_25_ClassI_Rep-2.raw p25_hpv_p PXD033383_OPSCC batch4 OPSCC_25_ClassI_Rep-3.raw p25_hpv_p PXD033383_OPSCC batch4 OPSCC_26-1_ClassI_Rep-1.raw p26_hpv_p PXD033383_OPSCC batch4 OPSCC_26-1_ClassI_Rep-2.raw p26_hpv_p PXD033383_OPSCC batch4 OPSCC_26-1_ClassI_Rep-3.raw p26_hpv_p PXD033383_OPSCC batch4 OPSCC_26-2_ClassI_Rep-1.raw p26_hpv_p PXD033383_OPSCC batch4 OPSCC_26-2_ClassI_Rep-2.raw p26_hpv_p PXD033383_OPSCC batch5 OPSCC_26-2_ClassI_Rep-3.raw p26_hpv_p PXD033383_OPSCC batch5 OPSCC_27-1_ClassI_Rep-1.raw p27_hpv_p PXD033383_OPSCC batch5 OPSCC_27-1_ClassI_Rep-2.raw p27_hpv_p PXD033383_OPSCC batch5 OPSCC_27-1_ClassI_Rep-3.raw p27_hpv_p PXD033383_OPSCC batch5 OPSCC_27-2_ClassI_Rep-1.raw p27_hpv_p PXD033383_OPSCC batch5 OPSCC_27-2_ClassI_Rep-2.raw p27_hpv_p PXD033383_OPSCC batch5 OPSCC_27-2_ClassI_Rep-3.raw p27_hpv_p PXD033383_OPSCC batch5 OPSCC_28_ClassI_Rep-1.raw p28_hpv_n PXD033383_OPSCC batch5 OPSCC_28_ClassI_Rep-2.raw p28_hpv_n PXD033383_OPSCC batch5 OPSCC_28_ClassI_Rep-3.raw p28_hpv_n PXD033383_OPSCC batch5 OPSCC_29_ClassI_Rep-1.raw p29_hpv_p PXD033383_OPSCC batch5 OPSCC_29_ClassI_Rep-2.raw p29_hpv_p PXD033383_OPSCC batch5 OPSCC_29_ClassI_Rep-3.raw p29_hpv_p PXD033383_OPSCC batch5 OPSCC_30_ClassI_Rep-1.raw p30_hpv_p PXD033383_OPSCC batch5 OPSCC_30_ClassI_Rep-2.raw p30_hpv_p PXD033383_OPSCC batch5 OPSCC_30_ClassI_Rep-3.raw p30_hpv_p PXD033383_OPSCC batch5 OPSCC_31_ClassI_Rep-1.raw p31_hpv_n PXD033383_OPSCC batch5 OPSCC_31_ClassI_Rep-2.raw p31_hpv_n PXD033383_OPSCC batch5 OPSCC_31_ClassI_Rep-3.raw p31_hpv_n PXD033383_OPSCC batch5 OPSCC_32_ClassI_Rep-1.raw p32_hpv_n PXD033383_OPSCC batch6 OPSCC_32_ClassI_Rep-2.raw p32_hpv_n PXD033383_OPSCC batch6 OPSCC_32_ClassI_Rep-3.raw p32_hpv_n PXD033383_OPSCC batch6 OPSCC_33_ClassI_Rep-1.raw p33_hpv_p PXD033383_OPSCC batch6 OPSCC_33_ClassI_Rep-2.raw p33_hpv_p PXD033383_OPSCC batch6 OPSCC_33_ClassI_Rep-3.raw p33_hpv_p PXD033383_OPSCC batch6 OPSCC_34_ClassI_Rep-1.raw p34_hpv_p PXD033383_OPSCC batch6 OPSCC_34_ClassI_Rep-2.raw p34_hpv_p PXD033383_OPSCC batch6 OPSCC_34_ClassI_Rep-3.raw p34_hpv_p PXD033383_OPSCC batch6 OPSCC_35_ClassI_Rep-1.raw p35_hpv_n PXD033383_OPSCC batch6 OPSCC_35_ClassI_Rep-2.raw p35_hpv_n PXD033383_OPSCC batch6 OPSCC_35_ClassI_Rep-3.raw p35_hpv_n PXD033383_OPSCC batch6 OPSCC_36_ClassI_Rep-1.raw p36_hpv_n PXD033383_OPSCC batch6 OPSCC_36_ClassI_Rep-2.raw p36_hpv_n PXD033383_OPSCC batch6 OPSCC_36_ClassI_Rep-3.raw p36_hpv_n PXD033383_OPSCC batch6 OPSCC_37_ClassI_Rep-1.raw p37_hpv_n PXD033383_OPSCC batch6 OPSCC_37_ClassI_Rep-2.raw p37_hpv_n PXD033383_OPSCC batch6 OPSCC_37_ClassI_Rep-3.raw p37_hpv_n PXD033383_OPSCC batch6 OPSCC_38_ClassI_Rep-1.raw p38_hpv_n PXD033383_OPSCC batch6 OPSCC_38_ClassI_Rep-2.raw p38_hpv_n PXD033383_OPSCC batch6 OPSCC_38_ClassI_Rep-3.raw p38_hpv_n PXD033383_OPSCC batch7 OPSCC_39_ClassI_Rep-1.raw p39_hpv_n PXD033383_OPSCC batch7 OPSCC_39_ClassI_Rep-2.raw p39_hpv_n PXD033383_OPSCC batch7 OPSCC_39_ClassI_Rep-3.raw p39_hpv_n PXD033383_OPSCC batch7 OPSCC_40_ClassI_Rep-1.raw p40_hpv_p PXD033383_OPSCC batch7 OPSCC_40_ClassI_Rep-2.raw p40_hpv_p PXD033383_OPSCC batch7 OPSCC_40_ClassI_Rep-3.raw p40_hpv_p PXD016060 Seq47405_QE3 P1-adnexcal-human biopsy-1 "A*01:01,A*26:01,B*35:02,B*37:01,C*06:02" PXD016060 Seq48139_QE2 P1-adnexcal-human biopsy-2 "A*01:01,A*26:01,B*35:02,B*37:01,C*06:02" PXD016060 Seq46722_QE3 P1-adnexcal-PDX-1 "A*01:01,A*26:01,B*35:02,B*37:01,C*06:02" PXD016060 Seq46723_QE3 P1-adnexcal-PDX-2 "A*01:01,A*26:01,B*35:02,B*37:01,C*06:02" PXD016060 Seq48523_QE2 P1-adnexcal-PDX-3 "A*01:01,A*26:01,B*35:02,B*37:01,C*06:02" PXD016060 Seq48517_QE2 P6-squamous-human biopsy "A*23:01,A*24:02,B*18:01,B*41:01,C*12:03,C*17:01" PXD016060 Seq48518_QE2 P6-squamous--PDX-p0-1 "A*23:01,A*24:02,B*18:01,B*41:01,C*12:03,C*17:01" PXD016060 Seq63721_QE3 P6-squamous--PDX-p0-2 "A*23:01,A*24:02,B*18:01,B*41:01,C*12:03,C*17:01" PXD016060 Seq63722_QE3 P6-squamous--PDX-p0-3 "A*23:01,A*24:02,B*18:01,B*41:01,C*12:03,C*17:01" PXD016060 Seq63723_QE3 P6-squamous--PDX-p3-1 "A*23:01,A*24:02,B*18:01,B*41:01,C*12:03,C*17:01" PXD016060 Seq63724_QE3 P6-squamous--PDX-p3-2 "A*23:01,A*24:02,B*18:01,B*41:01,C*12:03,C*17:01" phase2_PXD036856 3112_ML_360RIO-009INF_100min_01.raw HN2_IFN "A*24:02,A*29:02,B*14:02,B*44:03,C*02:02,C*16:01" phase2_PXD036856 3112_ML_360RIO-009INF_100min_02.raw HN2_IFN "A*24:02,A*29:02,B*14:02,B*44:03,C*02:02,C*16:01" phase2_PXD036856 3112_ML_360RIO-009_100min_01.raw HN2 "A*24:02,A*29:02,B*14:02,B*44:03,C*02:02,C*16:01" phase2_PXD036856 3112_ML_360RIO-009_100min_02.raw HN2 "A*24:02,A*29:02,B*14:02,B*44:03,C*02:02,C*16:01" phase2_PXD036856 3112_ML_360RIO-008-2906_100min_01.raw HN1_A03mut_B07mut_B18mut_LOH "A*02:01,A*03:01,B*07:02,B*18:01,C*05:01,C*07:02" phase2_PXD036856 3112_ML_360RIO-008-2906_100min_02.raw HN1_A03mut_B07mut_B18mut_LOH "A*02:01,A*03:01,B*07:02,B*18:01,C*05:01,C*07:02" phase2_PXD036856 3112_ML_360RIO-008INF_100min_01.raw HN1_A03mut_B07mut_B18mut_LOH_IFN "A*02:01,A*03:01,B*07:02,B*18:01,C*05:01,C*07:02" phase2_PXD036856 3112_ML_360RIO-008INF_100min_02.raw HN1_A03mut_B07mut_B18mut_LOH_IFN "A*02:01,A*03:01,B*07:02,B*18:01,C*05:01,C*07:02" phase2_PXD036856 3112_ML_360RIO-008_100min_01.raw HN1_A03mut_B07mut_B18mut_LOH "A*02:01,A*03:01,B*07:02,B*18:01,C*05:01,C*07:02" phase2_PXD036856 3112_ML_360RIO-008_100min_02.raw HN1_A03mut_B07mut_B18mut_LOH "A*02:01,A*03:01,B*07:02,B*18:01,C*05:01,C*07:02" phase2_PXD038782_raw 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep1.raw HNSCC_TOF "A*24:02,A*68:01,B*35:01,B*44:02,C*04:01,C*07:01" phase2_PXD038782_raw 210628_SS_malignant_HNSCC_W6-32_20__orbitrap_DDA_Rep2.raw HNSCC_TOF "A*24:02,A*68:01,B*35:01,B*44:02,C*04:01,C*07:01" phase2_PXD038782_d 211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1.d HNSCC_TOF "A*24:02,A*68:01,B*35:01,B*44:02,C*04:01,C*07:01" phase2_PXD038782_d 211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2.d HNSCC_TOF "A*24:02,A*68:01,B*35:01,B*44:02,C*04:01,C*07:01"