cancer study batch sample biology HLA special_note acquisition download_link BRCA PXD023038 batch1_1 F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool1.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool1.raw BRCA PXD023038 batch1_1 F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool2.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool2.raw BRCA PXD023038 batch1_1 F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool3.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool3.raw BRCA PXD023038 batch1_1 F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool4.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool4.raw BRCA PXD023038 batch1_1 F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool5.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool5.raw BRCA PXD023038 batch1_1 F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool6.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep1_pool6.raw BRCA PXD023038 batch1_1 F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool1.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool1.raw BRCA PXD023038 batch1_1 F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool2.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool2.raw BRCA PXD023038 batch1_1 F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool3.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool3.raw BRCA PXD023038 batch1_1 F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool4.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool4.raw BRCA PXD023038 batch1_2 F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool5.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool5.raw BRCA PXD023038 batch1_2 F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool6.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep2_pool6.raw BRCA PXD023038 batch1_2 F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool1.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool1.raw BRCA PXD023038 batch1_2 F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool2.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool2.raw BRCA PXD023038 batch1_2 F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool3.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool3.raw BRCA PXD023038 batch1_2 F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool4.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool4.raw BRCA PXD023038 batch1_2 F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool5.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool5.raw BRCA PXD023038 batch1_2 F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool6.raw MDA-MB-231 A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-negative_DDA_rep3_pool6.raw BRCA PXD023038 batch1_2 F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool1.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool1.raw BRCA PXD023038 batch1_2 F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool2.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool2.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool3.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool3.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool4.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool4.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool5.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool5.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool6.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep1_pool6.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool1.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool1.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool2.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool2.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool3.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool3.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool4.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool4.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool5.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool5.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool6.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep2_pool6.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep3_pool2.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep3_pool2.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep3_pool3.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep3_pool3.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep3_pool4.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep3_pool4.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep3_pool5.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep3_pool5.raw BRCA PXD023038 batch2 F120190510_PF_TNBC_IFN-positive_DDA_rep3_pool6.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 excluded DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023038/F120190510_PF_TNBC_IFN-positive_DDA_rep3_pool6.raw BRCA PXD000394 20120321_EXQ1_MiBa_SA_HCC1937_1.raw HCC1937 A*23:01,A*24:02,B*07:02,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120321_EXQ1_MiBa_SA_HCC1937_1.raw BRCA PXD000394 20120321_EXQ1_MiBa_SA_HCC1937_2.raw HCC1937 A*23:01,A*24:02,B*07:02,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120321_EXQ1_MiBa_SA_HCC1937_2.raw BRCA PXD000394 20120322_EXQ1_MiBa_SA_HCC1937_1_A.raw HCC1937 A*23:01,A*24:02,B*07:02,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120322_EXQ1_MiBa_SA_HCC1937_1_A.raw BRCA PXD000394 20120322_EXQ1_MiBa_SA_HCC1937_2_A.raw HCC1937 A*23:01,A*24:02,B*07:02,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120322_EXQ1_MiBa_SA_HCC1937_2_A.raw BRCA PXD000394 20130328_EXQ1_MiBa_SA_HCC1937.raw HCC1937 A*23:01,A*24:02,B*07:02,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20130328_EXQ1_MiBa_SA_HCC1937.raw BRCA PXD000394 20120321_EXQ1_MiBa_SA_HCC1143_1.raw HCC1143 A*31:01,A*31:01,B*35:08,B*37:01,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120321_EXQ1_MiBa_SA_HCC1143_1.raw BRCA PXD000394 20120321_EXQ1_MiBa_SA_HCC1143_2.raw HCC1143 A*31:01,A*31:01,B*35:08,B*37:01,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120321_EXQ1_MiBa_SA_HCC1143_2.raw BRCA PXD000394 20120322_EXQ1_MiBa_SA_HCC1143_1_A.raw HCC1143 A*31:01,A*31:01,B*35:08,B*37:01,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120322_EXQ1_MiBa_SA_HCC1143_1_A.raw BRCA PXD000394 20130328_EXQ1_MiBa_SA_HCC1143.raw HCC1143 A*31:01,A*31:01,B*35:08,B*37:01,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20130328_EXQ1_MiBa_SA_HCC1143.raw BRCA PXD009738 batch1 FL0180_MON_0267T_even.raw TNBC_P1 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0180_MON_0267T_even.raw BRCA PXD009738 batch1 FL0180_MON_0267T_odd.raw TNBC_P1 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0180_MON_0267T_odd.raw BRCA PXD009738 batch1 FL0180b_MON_0267T_even.raw TNBC_P1 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0180b_MON_0267T_even.raw BRCA PXD009738 batch1 FL0180b_MON_0267T_odd.raw TNBC_P1 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0180b_MON_0267T_odd.raw BRCA PXD009738 batch1 FL0180c_MON_0267T_even_1h.raw TNBC_P1 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0180c_MON_0267T_even_1h.raw BRCA PXD009738 batch1 FL0180c_MON_0267T_odd_1h.raw TNBC_P1 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0180c_MON_0267T_odd_1h.raw BRCA PXD009738 batch1 FL0182_MON_0237T_even.raw TNBC_P2 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0182_MON_0237T_even.raw BRCA PXD009738 batch1 FL0182_MON_0237T_odd.raw TNBC_P2 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0182_MON_0237T_odd.raw BRCA PXD009738 batch1 FL0182b_MON_0237T_even.raw TNBC_P2 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0182b_MON_0237T_even.raw BRCA PXD009738 batch1 FL0182b_MON_0237T_odd.raw TNBC_P2 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0182b_MON_0237T_odd.raw BRCA PXD009738 batch1 FL0182c_MON_0237T_even_1h.raw TNBC_P2 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0182c_MON_0237T_even_1h.raw BRCA PXD009738 batch1 FL0182c_MON_0237T_odd_1h.raw TNBC_P2 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0182c_MON_0237T_odd_1h.raw BRCA PXD009738 batch1 FL0184_MON_0014T_even.raw TNBC_P3 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0184_MON_0014T_even.raw BRCA PXD009738 batch1 FL0184_MON_0014T_odd.raw TNBC_P3 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0184_MON_0014T_odd.raw BRCA PXD009738 batch1 FL0184b_MON_0014T_even.raw TNBC_P3 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0184b_MON_0014T_even.raw BRCA PXD009738 batch1 FL0184b_MON_0014T_odd.raw TNBC_P3 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0184b_MON_0014T_odd.raw BRCA PXD009738 batch1 FL0184c_MON_0014T_even_1h.raw TNBC_P3 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0184c_MON_0014T_even_1h.raw BRCA PXD009738 batch1 FL0184c_MON_0014T_odd_1h.raw TNBC_P3 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0184c_MON_0014T_odd_1h.raw BRCA PXD009738 batch1 FL0186_MON_0025T_even.raw TNBC_P4 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0186_MON_0025T_even.raw BRCA PXD009738 batch1 FL0186_MON_0025T_odd.raw TNBC_P4 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0186_MON_0025T_odd.raw BRCA PXD009738 batch2 FL0186b_MON_0025T_even.raw TNBC_P4 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0186b_MON_0025T_even.raw BRCA PXD009738 batch2 FL0186b_MON_0025T_odd.raw TNBC_P4 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0186b_MON_0025T_odd.raw BRCA PXD009738 batch2 FL0186c_MON_0025T_even_1h.raw TNBC_P4 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0186c_MON_0025T_even_1h.raw BRCA PXD009738 batch2 FL0186c_MON_0025T_odd_1h.raw TNBC_P4 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0186c_MON_0025T_odd_1h.raw BRCA PXD009738 batch2 FL0188_MON_0230T_even.raw TNBC_P5 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0188_MON_0230T_even.raw BRCA PXD009738 batch2 FL0188_MON_0230T_odd.raw TNBC_P5 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0188_MON_0230T_odd.raw BRCA PXD009738 batch2 FL0188b_MON_0230T_even.raw TNBC_P5 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0188b_MON_0230T_even.raw BRCA PXD009738 batch2 FL0188b_MON_0230T_odd.raw TNBC_P5 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0188b_MON_0230T_odd.raw BRCA PXD009738 batch2 FL0188c_MON_0230T_even_1h.raw TNBC_P5 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0188c_MON_0230T_even_1h.raw BRCA PXD009738 batch2 FL0188c_MON_0230T_odd_1h.raw TNBC_P5 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0188c_MON_0230T_odd_1h.raw BRCA PXD009738 batch2 FL0189_MON_0224T_even.raw TNBC_P6 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0189_MON_0224T_even.raw BRCA PXD009738 batch2 FL0189_MON_0224T_odd.raw TNBC_P6 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0189_MON_0224T_odd.raw BRCA PXD009738 batch2 FL0189b_MON_0224T_even.raw TNBC_P6 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0189b_MON_0224T_even.raw BRCA PXD009738 batch2 FL0189b_MON_0224T_odd.raw TNBC_P6 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0189b_MON_0224T_odd.raw BRCA PXD009738 batch2 FL0189c_MON_0224T_even_1h.raw TNBC_P6 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0189c_MON_0224T_even_1h.raw BRCA PXD009738 batch2 FL0189c_MON_0224T_odd_1h.raw TNBC_P6 A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738/generated/FL0189c_MON_0224T_odd_1h.raw BRCA phase2_PXD025345 PK6_1395III_EV_all.wiff HCC 1395 _ev A*29:02,B*08:01,B*45:01,C*06:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK6_1395III_EV_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK6_1395III_EV_all.wiff.scan BRCA phase2_PXD025345 PK5_1395III_CL_all.wiff HCC1395 A*29:02,B*08:01,B*45:01,C*06:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK5_1395III_CL_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK5_1395III_CL_all.wiff.scan BRCA phase2_PXD025345 PK4_1395II_EV_all.wiff HCC 1395 _ev A*29:02,B*08:01,B*45:01,C*06:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK4_1395II_EV_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK4_1395II_EV_all.wiff.scan BRCA phase2_PXD025345 PK3_1395II_CL_all.wiff HCC1395 A*29:02,B*08:01,B*45:01,C*06:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK3_1395II_CL_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK3_1395II_CL_all.wiff.scan BRCA phase2_PXD025345 PK2_1806_III_EV_all.wiff HCC 1806_ev A*23:01,A*68:01,B*51:01,B*15:03,C*02:02,C*02:10 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK2_1806_III_EV_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK2_1806_III_EV_all.wiff.scan BRCA phase2_PXD025345 PK2_1395I_CL_all.wiff HCC1395 A*29:02,B*08:01,B*45:01,C*06:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK2_1395I_CL_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK2_1395I_CL_all.wiff.scan BRCA phase2_PXD025345 PK1_1806_III_CL_all.wiff HCC1806 A*23:01,A*68:01,B*51:01,B*15:03,C*02:02,C*02:10 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK1_1806_III_CL_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK1_1806_III_CL_all.wiff.scan BRCA phase2_PXD025345 PK1_1395I_EV_all.wiff HCC 1395 _ev A*29:02,B*08:01,B*45:01,C*06:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK1_1395I_EV_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK1_1395I_EV_all.wiff.scan BRCA phase2_PXD025345 PK_MCF7_II_EV_all_rpt.wiff MCF7 _ev A*02:01,B*44:02,B*18:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_MCF7_II_EV_all_rpt.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_MCF7_II_EV_all_rpt.wiff.scan BRCA phase2_PXD025345 PK_MCF7_II_CL_all.wiff MCF7 A*02:01,B*44:02,B*18:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_MCF7_II_CL_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_MCF7_II_CL_all.wiff.scan BRCA phase2_PXD025345 PK_453_III_EV_all.wiff MDA-MB-453_ev A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_453_III_EV_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_453_III_EV_all.wiff.scan BRCA phase2_PXD025345 PK_453_III_CL_all.wiff MDA-MB-453 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_453_III_CL_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_453_III_CL_all.wiff.scan BRCA phase2_PXD025345 PK_415_EV_III_all.wiff MDA-MB-415_ev A*30:02,A*33:01,B*14:02,B*18:01,C*05:01,C*08:15 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_EV_III_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_EV_III_all.wiff.scan BRCA phase2_PXD025345 PK_415_EV_II_all_.wiff MDA-MB-415_ev A*30:02,A*33:01,B*14:02,B*18:01,C*05:01,C*08:15 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_EV_II_all_.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_EV_II_all_.wiff.scan BRCA phase2_PXD025345 PK_415_EV_I_all.wiff MDA-MB-415_ev A*30:02,A*33:01,B*14:02,B*18:01,C*05:01,C*08:15 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_EV_I_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_EV_I_all.wiff.scan BRCA phase2_PXD025345 PK_415_CL_III_all.wiff MDA-MB-415 A*30:02,A*33:01,B*14:02,B*18:01,C*05:01,C*08:15 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_CL_III_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_CL_III_all.wiff.scan BRCA phase2_PXD025345 PK_415_CL_II_all.wiff MDA-MB-415 A*30:02,A*33:01,B*14:02,B*18:01,C*05:01,C*08:15 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_CL_II_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_CL_II_all.wiff.scan BRCA phase2_PXD025345 PK_415_CL_I_all.wiff MDA-MB-415 A*30:02,A*33:01,B*14:02,B*18:01,C*05:01,C*08:15 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_CL_I_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_415_CL_I_all.wiff.scan BRCA phase2_PXD025345 PK_1806_II_EV_all.wiff HCC 1806_ev A*23:01,A*68:01,B*51:01,B*15:03,C*02:02,C*02:10 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_1806_II_EV_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_1806_II_EV_all.wiff.scan BRCA phase2_PXD025345 PK_1806_II_CL_all.wiff HCC1806 A*23:01,A*68:01,B*51:01,B*15:03,C*02:02,C*02:10 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_1806_II_CL_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK_1806_II_CL_all.wiff.scan BRCA phase2_PXD025345 PK__MCF7_III_CL_all.wiff MCF7 A*02:01,B*44:02,B*18:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK__MCF7_III_CL_all.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/PK__MCF7_III_CL_all.wiff.scan BRCA phase2_PXD025345 MDAMB231_I_EV.wiff MDA-MB-231_ev A*02:01,A*02:17,B*41:01,B*40:02,C*17:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/MDAMB231_I_EV.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/MDAMB231_I_EV.wiff.scan BRCA phase2_PXD025345 MDAMB231_I_CL.wiff MDA-MB-231 A*02:01,A*02:17,B*41:01,B*40:02,C*17:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/MDAMB231_I_CL.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/MDAMB231_I_CL.wiff.scan BRCA phase2_PXD025345 MCF7_I_EV.wiff MCF7 _ev A*02:01,B*44:02,B*18:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/MCF7_I_EV.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/MCF7_I_EV.wiff.scan BRCA phase2_PXD025345 MCF7_I_CL.wiff MCF7 A*02:01,B*44:02,B*18:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/MCF7_I_CL.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/MCF7_I_CL.wiff.scan BRCA phase2_PXD025345 453_II_EV.wiff MDA-MB-453_ev A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/453_II_EV.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/453_II_EV.wiff.scan BRCA phase2_PXD025345 453_II_CL.wiff MDA-MB-453 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/453_II_CL.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/453_II_CL.wiff.scan BRCA phase2_PXD025345 231-II_EV.wiff MDA-MB-231_ev A*02:01,A*02:17,B*41:01,B*40:02,C*17:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/231-II_EV.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/231-II_EV.wiff.scan BRCA phase2_PXD025345 231-II_CL.wiff MDA-MB-231 A*02:01,A*02:17,B*41:01,B*40:02,C*17:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/231-II_CL.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/231-II_CL.wiff.scan BRCA phase2_PXD025345 191219_PK_361EV_II.wiff MDA-MB-361_ev A*24:02,A*01:01,B*51:08,B*39:06,C*16:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191219_PK_361EV_II.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191219_PK_361EV_II.wiff.scan BRCA phase2_PXD025345 191218PK_361_EV_I.wiff MDA-MB-361_ev A*24:02,A*01:01,B*51:08,B*39:06,C*16:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191218PK_361_EV_I.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191218PK_361_EV_I.wiff.scan BRCA phase2_PXD025345 191218PK_361_CL_II.wiff MDA-MB-361 A*24:02,A*01:01,B*51:08,B*39:06,C*16:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191218PK_361_CL_II.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191218PK_361_CL_II.wiff.scan BRCA phase2_PXD025345 191218PK_361_CL_I.wiff MDA-MB-361 A*24:02,A*01:01,B*51:08,B*39:06,C*16:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191218PK_361_CL_I.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191218PK_361_CL_I.wiff.scan BRCA phase2_PXD025345 191216PK_1954_EV_III.wiff HCC 1954_ev A*24:02,B*35:01,B*40:06,C*15:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216PK_1954_EV_III.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216PK_1954_EV_III.wiff.scan BRCA phase2_PXD025345 191216PK_1954_EV_II.wiff HCC 1954_ev A*24:02,B*35:01,B*40:06,C*15:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216PK_1954_EV_II.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216PK_1954_EV_II.wiff.scan BRCA phase2_PXD025345 191216PK_1954_EV_I.wiff HCC 1954_ev A*24:02,B*35:01,B*40:06,C*15:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216PK_1954_EV_I.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216PK_1954_EV_I.wiff.scan BRCA phase2_PXD025345 191216PK_1954_CL_III.wiff HCC1954 A*24:02,B*35:01,B*40:06,C*15:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216PK_1954_CL_III.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216PK_1954_CL_III.wiff.scan BRCA phase2_PXD025345 191216PK_1954_CL_II.wiff HCC1954 A*24:02,B*35:01,B*40:06,C*15:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216PK_1954_CL_II.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216PK_1954_CL_II.wiff.scan BRCA phase2_PXD025345 191216_PK_1954_CL_I.wiff HCC1954 A*24:02,B*35:01,B*40:06,C*15:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216_PK_1954_CL_I.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/191216_PK_1954_CL_I.wiff.scan BRCA phase2_PXD025345 190823_Pankaj_453EV.wiff MDA-MB-453_ev A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/190823_Pankaj_453EV.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/190823_Pankaj_453EV.wiff.scan BRCA phase2_PXD025345 190823_Pankaj_453CL.wiff MDA-MB-453 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/190823_Pankaj_453CL.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/190823_Pankaj_453CL.wiff.scan BRCA phase2_PXD025345 190823_Pankaj_1806EV.wiff HCC 1806_ev A*23:01,A*68:01,B*51:01,B*15:03,C*02:02,C*02:10 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/190823_Pankaj_1806EV.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/190823_Pankaj_1806EV.wiff.scan BRCA phase2_PXD025345 190823_Pankaj_1806CL.wiff HCC1806 A*23:01,A*68:01,B*51:01,B*15:03,C*02:02,C*02:10 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/190823_Pankaj_1806CL.wiff;ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025345/190823_Pankaj_1806CL.wiff.scan BRCA phase2_PXD034818 Breast_231_18T_TMT0_060720_1.raw 231/18T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_231_18T_TMT0_060720_1.raw BRCA phase2_PXD034818 Breast_231_18T_TMT0_060720_2.raw 231/18T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_231_18T_TMT0_060720_2.raw BRCA phase2_PXD034818 Breast_333_18T_TMT0_050721_1.raw 333/18T/ER-/PR-/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_333_18T_TMT0_050721_1.raw BRCA phase2_PXD034818 Breast_333_18T_TMT0_050721_2.raw 333/18T/ER-/PR-/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_333_18T_TMT0_050721_2.raw BRCA phase2_PXD034818 Breast_346_18T_TMT0_060720_1.raw 346/18T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_346_18T_TMT0_060720_1.raw BRCA phase2_PXD034818 Breast_346_18T_TMT0_060720_2.raw 346/18T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_346_18T_TMT0_060720_2.raw BRCA phase2_PXD034818 Breast_513_20T_TMT0_050721_1.raw 513/20T/ER-/PR-/HER-2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_513_20T_TMT0_050721_1.raw BRCA phase2_PXD034818 Breast_513_20T_TMT0_050721_2.raw 513/20T/ER-/PR-/HER-2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_513_20T_TMT0_050721_2.raw BRCA phase2_PXD034818 Breast_684_19T_TMT0_050721_1.raw 684/19T/ER+/PR+/Her-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_684_19T_TMT0_050721_1.raw BRCA phase2_PXD034818 Breast_684_19T_TMT0_050721_2.raw 684/19T/ER+/PR+/Her-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_684_19T_TMT0_050721_2.raw BRCA phase2_PXD034818 Breast_790_18T_TMT0_260521_1.raw 790/18T/ER+/PR+/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_790_18T_TMT0_260521_1.raw BRCA phase2_PXD034818 Breast_790_18T_TMT0_260521_2.raw 790/18T/ER+/PR+/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_790_18T_TMT0_260521_2.raw BRCA phase2_PXD034818 Breast_820_19T_TMT0_260521_1.raw 820/19T/ER+/PR-/Her2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_820_19T_TMT0_260521_1.raw BRCA phase2_PXD034818 Breast_820_19T_TMT0_260521_2.raw 820/19T/ER+/PR-/Her2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_820_19T_TMT0_260521_2.raw BRCA phase2_PXD034818 Breast_928_19T_TMT0_260521_1.raw 928/19T/ER+/PR+/Her-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_928_19T_TMT0_260521_1.raw BRCA phase2_PXD034818 Breast_928_19T_TMT0_260521_2.raw 928/19T/ER+/PR+/Her-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_928_19T_TMT0_260521_2.raw BRCA phase2_PXD034818 Breast_1029_17T_TMT0_060720_1.raw 1029/17T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1029_17T_TMT0_060720_1.raw BRCA phase2_PXD034818 Breast_1029_17T_TMT0_060720_2.raw 1029/17T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1029_17T_TMT0_060720_2.raw BRCA phase2_PXD034818 Breast_1137_18T_TMT0_060720_1.raw 1137/18/ER-/PR-/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1137_18T_TMT0_060720_1.raw BRCA phase2_PXD034818 Breast_1137_18T_TMT0_060720_2.raw 1137/18/ER-/PR-/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1137_18T_TMT0_060720_2.raw BRCA phase2_PXD034818 Breast_1192_17T_TMT0_060720_1.raw 1192/17T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1192_17T_TMT0_060720_1.raw BRCA phase2_PXD034818 Breast_1192_17T_TMT0_060720_2.raw 1192/17T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1192_17T_TMT0_060720_2.raw BRCA phase2_PXD034818 Breast_1208_18T_TMT0_260521_1.raw 1208/18/ER+/PR+/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1208_18T_TMT0_260521_1.raw BRCA phase2_PXD034818 Breast_1208_18T_TMT0_260521_2.raw 1208/18/ER+/PR+/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1208_18T_TMT0_260521_2.raw BRCA phase2_PXD034818 Breast_1305_19T_TMT0_050721_1.raw 1305/19T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1305_19T_TMT0_050721_1.raw BRCA phase2_PXD034818 Breast_1305_19T_TMT0_050721_2.raw 1305/19T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1305_19T_TMT0_050721_2.raw BRCA phase2_PXD034818 Breast_1478_18T_TMT0_060720_1.raw 1478/18/ER-/PR-/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1478_18T_TMT0_060720_1.raw BRCA phase2_PXD034818 Breast_1478_18T_TMT0_060720_2.raw 1478/18/ER-/PR-/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1478_18T_TMT0_060720_2.raw BRCA phase2_PXD034818 Breast_1945_18T_TMT0_260521_1.raw 1945/18T/ER+/PR+/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1945_18T_TMT0_260521_1.raw BRCA phase2_PXD034818 Breast_1945_18T_TMT0_260521_2.raw 1945/18T/ER+/PR+/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1945_18T_TMT0_260521_2.raw BRCA phase2_PXD034818 Breast_1949_16T_TMT0_060720_1.raw 1949/16T/ER-/PR-/HER-2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1949_16T_TMT0_060720_1.raw BRCA phase2_PXD034818 Breast_1949_16T_TMT0_060720_2.raw 1949/16T/ER-/PR-/HER-2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1949_16T_TMT0_060720_2.raw BRCA phase2_PXD034818 Breast_2049_18T_TMT0_060720_1.raw 2049/18T/ER-/PR-/HER-2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_2049_18T_TMT0_060720_1.raw BRCA phase2_PXD034818 Breast_2049_18T_TMT0_060720_2.raw 2049/18T/ER-/PR-/HER-2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_2049_18T_TMT0_060720_2.raw BRCA phase2_PXD034818 Breast_2179_18T_TMT0_260521_1.raw 2179/18T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_2179_18T_TMT0_260521_1.raw BRCA phase2_PXD034818 Breast_2179_18T_TMT0_260521_2.raw 2179/18T/ER+/PR+/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_2179_18T_TMT0_260521_2.raw BRCA phase2_PXD034818 Breast_2189_18T_TMT0_050721_1.raw 2189/18T/ER-/PR-/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_2189_18T_TMT0_050721_1.raw BRCA phase2_PXD034818 Breast_2189_18T_TMT0_050721_2.raw 2189/18T/ER-/PR-/Her2neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_2189_18T_TMT0_050721_2.raw BRCA phase2_PXD034818 Breast_2339_19T_TMT0_050721_1.raw 2339/19T/ER-/PR-Her-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_2339_19T_TMT0_050721_1.raw BRCA phase2_PXD034818 Breast_2339_19T_TMT0_050721_2.raw 2339/19T/ER-/PR-Her-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_2339_19T_TMT0_050721_2.raw BRCA phase2_PXD034818 Breast_825_19T_240321_1.raw 825/19T/ER-/PR-/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_825_19T_240321_1.raw BRCA phase2_PXD034818 Breast_825_19T_240321_2.raw 825/19T/ER-/PR-/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_825_19T_240321_2.raw BRCA phase2_PXD034818 Breast_977_19T_240321_1.raw 977/19T/ER-/PR-/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_977_19T_240321_1.raw BRCA phase2_PXD034818 Breast_977_19T_240321_2.raw 977/19T/ER-/PR-/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_977_19T_240321_2.raw BRCA phase2_PXD034818 Breast_1097_19T_240321_1.raw 1097/19T/ER-/PR-/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1097_19T_240321_1.raw BRCA phase2_PXD034818 Breast_1097_19T_240321_2.raw 1097/19T/ER-/PR-/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_1097_19T_240321_2.raw BRCA phase2_PXD034818 Breast_2060_19T_240321_1.raw 2060/19T/ER-/PR-/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_2060_19T_240321_1.raw BRCA phase2_PXD034818 Breast_2060_19T_240321_2.raw 2060/19T/ER-/PR-/HER-2/neu-neg DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034818/Breast_2060_19T_240321_2.raw BRCA PXD023044 batch1 F120190510_PF_MDA_MB231_Rep1_IFN_positive_pool1.raw MDA-MB-231_IFNr 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F120190510_PF_MDA_MB231_Rep1_IFN_positive_pool5.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023044/F120190510_PF_MDA_MB231_Rep1_IFN_positive_pool5.raw BRCA PXD023044 batch1 F120190510_PF_MDA_MB231_Rep1_IFN_positive_pool6.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023044/F120190510_PF_MDA_MB231_Rep1_IFN_positive_pool6.raw BRCA PXD023044 batch1 F120190510_PF_MDA_MB231_Rep1_IFN_positive_pool7.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD023044/F120190510_PF_MDA_MB231_Rep1_IFN_positive_pool7.raw BRCA PXD023044 batch1 F120190510_PF_MDA_MB231_Rep1_IFN_positive_pool8.raw MDA-MB-231_IFNr A*02:01,A*02:17,B*40:02,B*41:01,C*02:02,C*17:01 DDA 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ftp://massive-ftp.ucsd.edu/v07/MSV000096406/raw/Raw/RCC_patient_tumor/RCC_16097_112/RCC_16097_112_tumor_W632_fxn/AG20211005_RCC_16097_112_Tumor_W632_Fxn03.raw KIRC MSV000096406_faims batch1 PC20200211_FAIMS_SK_HLA_16097_106_tumor_2IPs_0p066g_fxn01.raw p106 excluded DDA ftp://massive-ftp.ucsd.edu/v07/MSV000096406/raw/Raw/RCC_patient_tumor/RCC_16097_106/RCC_16097_106_tumor_FRXFAIMS/PC20200211_FAIMS_SK_HLA_16097_106_tumor_2IPs_0p066g_fxn01.raw KIRC MSV000096406_faims batch1 PC20200211_FAIMS_SK_HLA_16097_106_tumor_2IPs_0p066g_fxn02.raw p106 excluded DDA ftp://massive-ftp.ucsd.edu/v07/MSV000096406/raw/Raw/RCC_patient_tumor/RCC_16097_106/RCC_16097_106_tumor_FRXFAIMS/PC20200211_FAIMS_SK_HLA_16097_106_tumor_2IPs_0p066g_fxn02.raw KIRC MSV000096406_faims batch1 PC20200211_FAIMS_SK_HLA_16097_106_tumor_2IPs_0p066g_fxn03.raw p106 excluded DDA 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ftp://massive-ftp.ucsd.edu/v07/MSV000096406/raw/Raw/RCC_patient_tumor/RCC_16097_107/RCC_16097_107_tumor_W632_FAIMS_frx/AG20201021_FAIMS_SR_HLA_16097_107_tumor_RCC_W632_2IPsa0p08g_Fxn01.raw KIRC MSV000096406_faims batch1 AG20201021_FAIMS_SR_HLA_16097_107_tumor_RCC_W632_2IPsa0p08g_Fxn02.raw p107 excluded DDA ftp://massive-ftp.ucsd.edu/v07/MSV000096406/raw/Raw/RCC_patient_tumor/RCC_16097_107/RCC_16097_107_tumor_W632_FAIMS_frx/AG20201021_FAIMS_SR_HLA_16097_107_tumor_RCC_W632_2IPsa0p08g_Fxn02.raw KIRC MSV000096406_faims batch1 AG20201021_FAIMS_SR_HLA_16097_107_tumor_RCC_W632_2IPsa0p08g_Fxn03.raw p107 excluded DDA ftp://massive-ftp.ucsd.edu/v07/MSV000096406/raw/Raw/RCC_patient_tumor/RCC_16097_107/RCC_16097_107_tumor_W632_FAIMS_frx/AG20201021_FAIMS_SR_HLA_16097_107_tumor_RCC_W632_2IPsa0p08g_Fxn03.raw KIRC MSV000096406_faims batch1 AG20201110_FAIMS_SR_HLA_16097_108_tumor_primary_RCC_W632_2IPsa0p1g_01.raw p108 excluded DDA 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ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN4_R02.raw COAD PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN5_2ndC-18_R01.raw CRC-01 A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN5_2ndC-18_R01.raw COAD PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN5_2ndC-18_R02.raw CRC-01 A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_IFN5_2ndC-18_R02.raw COAD PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM1_R01.raw CRC-01 A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM1_R01.raw COAD PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM1_R02.raw CRC-01 A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM1_R02.raw COAD PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM2_R01.raw CRC-01 A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM2_R01.raw COAD PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM2_R02.raw CRC-01 A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM2_R02.raw COAD PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM3_R01.raw CRC-01 A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM3_R01.raw COAD PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM3_R02.raw CRC-01 A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM3_R02.raw COAD PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM4_R01.raw CRC-01 A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM4_R01.raw COAD PXD014017 batch3 20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM4_R02.raw CRC-01 A*31:01,A*32:01,B*14:01,B*27:05,C*02:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180821_QE_HFX_LC2_SA_JMI_HLAIp_CRC-01_TRAM4_R02.raw COAD PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN1_R01.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN1_R01.raw COAD PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN1_R02.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN1_R02.raw COAD PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN2_R01.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN2_R01.raw COAD PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN2_R02.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN2_R02.raw COAD PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN3_R01.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN3_R01.raw COAD PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN3_R02.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN3_R02.raw COAD PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN4_R01.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN4_R01.raw COAD PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN4_R02.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN4_R02.raw COAD PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN5_R01.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN5_R01.raw COAD PXD014017 batch3 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN5_R02.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN5_R02.raw COAD PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN6_R01.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN6_R01.raw COAD PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN6_R02.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_IFN6_R02.raw COAD PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM1_R01.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM1_R01.raw COAD PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM1_R02.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM1_R02.raw COAD PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM2_R01.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM2_R01.raw COAD PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM2_R02.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM2_R02.raw COAD PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM3_R01.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM3_R01.raw COAD PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM3_R02.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM3_R02.raw COAD PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM4_R01.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM4_R01.raw COAD PXD014017 batch4 20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM4_R02.raw CRC-08 A*03:01,A*29:01,B*35:03,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180824_QEh1_LC1_SA_JMI_HLAIp_CRC-08_TRAM4_R02.raw COAD PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN1_R01.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN1_R01.raw COAD PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN1_R02.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN1_R02.raw COAD PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN2_R01.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN2_R01.raw COAD PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN2_R02.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN2_R02.raw COAD PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN3_R01.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN3_R01.raw COAD PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN3_R02.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN3_R02.raw COAD PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN4_R01.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN4_R01.raw COAD PXD014017 batch4 20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN4_R02.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180831_QEh1_LC1_SA_JMI_HLAIp_CRC-04_IFN4_R02.raw COAD PXD014017 batch4 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM1_R01.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM1_R01.raw COAD PXD014017 batch4 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM1_R02.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM1_R02.raw COAD PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM2_R01.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM2_R01.raw COAD PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM2_R02.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM2_R02.raw COAD PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM3_R01.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM3_R01.raw COAD PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM3_R02.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM3_R02.raw COAD PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM4_R01.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM4_R01.raw COAD PXD014017 batch5 20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM4_R02.raw CRC-04 A*03:01,A*24:02,B*18:01,B*35:08,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180906_QEh1_LC1_SA_JMI_HLAIp_CRC-04_TRAM4_R02.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN1_R01.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN1_R01.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN1_R02.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN1_R02.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN2_R01.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN2_R01.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN2_R02.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN2_R02.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN3_R01.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN3_R01.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN3_R02.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_IFN3_R02.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM1_R01.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM1_R01.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM1_R02.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM1_R02.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM2_R01.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM2_R01.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM2_R02.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM2_R02.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM3_R01.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM3_R01.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM3_R02.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM3_R02.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM4_R01.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM4_R01.raw COAD PXD014017 batch5 20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM4_R02.raw CRC-05 A*32:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014017/20180911_QEh1_LC1_SA_JMI_HLAIp_CRC-05_TRAM4_R02.raw COAD MSV000087927 HCT116MG_D190212_S1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://massive.ucsd.edu/v03/MSV000087927/raw/HCT116MG_D190212_S1.raw COAD MSV000087927 HCT116MG_D190212_S2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://massive.ucsd.edu/v03/MSV000087927/raw/HCT116MG_D190212_S2.raw COAD MSV000087927 HCT116MG_D190212_S3.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://massive.ucsd.edu/v03/MSV000087927/raw/HCT116MG_D190212_S3.raw COAD MSV000087927 HCT116MG_D190212_S4.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://massive.ucsd.edu/v03/MSV000087927/raw/HCT116MG_D190212_S4.raw COAD PXD000394 20120515_EXQ3_MiBa_SA_HCT116_mHLA-1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120515_EXQ3_MiBa_SA_HCT116_mHLA-1.raw COAD PXD000394 20120518_EXQ0_MiBa_SA_HCT116_mHLA-2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120518_EXQ0_MiBa_SA_HCT116_mHLA-2.raw COAD PXD000394 20120617_EXQ0_MiBa_SA_HCT116_1_mHLA_2hr.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120617_EXQ0_MiBa_SA_HCT116_1_mHLA_2hr.raw COAD PXD000394 20120619_EXQ6_MiBa_SA_HCT116_2_mHLA_2hr.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120619_EXQ6_MiBa_SA_HCT116_2_mHLA_2hr.raw COAD PXD021755 batch1 Lara_190212_P0814_MR_JB_HA1_HCD_R1.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lara_190212_P0814_MR_JB_HA1_HCD_R1.raw COAD PXD021755 batch1 Lara_190212_P0814_MR_JB_HA2_HCD_R1.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lara_190212_P0814_MR_JB_HA2_HCD_R1.raw " COAD PXD021755 batch1 Lara_190212_P0814_MR_JB_HA3_HCD_R1.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lara_190212_P0814_MR_JB_HA3_HCD_R1.raw " COAD PXD021755 batch1 Lara_190212_P0814_MR_JB_HD1_HCD_R1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lara_190212_P0814_MR_JB_HD1_HCD_R1.raw " COAD PXD021755 batch1 Lara_190212_P0814_MR_JB_HD2_HCD_R1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lara_190212_P0814_MR_JB_HD2_HCD_R1.raw " COAD PXD021755 batch1 Lara_190212_P0814_MR_JB_HD3_HCD_R1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lara_190212_P0814_MR_JB_HD3_HCD_R1.raw " COAD PXD021755 batch1 Lumos_190208_P0814_MR_JB_HA1_HCD_R1.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190208_P0814_MR_JB_HA1_HCD_R1.raw " COAD PXD021755 batch1 Lumos_190208_P0814_MR_JB_HA2_HCD_R1.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190208_P0814_MR_JB_HA2_HCD_R1.raw " COAD PXD021755 batch1 Lumos_190208_P0814_MR_JB_HA3_HCD_R1.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190208_P0814_MR_JB_HA3_HCD_R1.raw COAD PXD021755 batch1 Lumos_190208_P0814_MR_JB_HD1_HCD_R1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190208_P0814_MR_JB_HD1_HCD_R1.raw " COAD PXD021755 batch1 Lumos_190208_P0814_MR_JB_HD2_HCD_R1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190208_P0814_MR_JB_HD2_HCD_R1.raw " COAD PXD021755 batch1 Lumos_190208_P0814_MR_JB_HD3_HCD_R1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190208_P0814_MR_JB_HD3_HCD_R1.raw COAD PXD021755 batch1 Lumos_190217_P0814_MR_JB_HA1_EThcD_R1.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190217_P0814_MR_JB_HA1_EThcD_R1.raw COAD PXD021755 batch1 Lumos_190217_P0814_MR_JB_HD1_EThcD_R1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190217_P0814_MR_JB_HD1_EThcD_R1.raw " COAD PXD021755 batch1 Lumos_190217_P0814_MR_JB_HD2_EThcD_R1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190217_P0814_MR_JB_HD2_EThcD_R1.raw " COAD PXD021755 batch1 Lumos_190217_P0814_MR_JB_HD3_EThcD_R2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190217_P0814_MR_JB_HD3_EThcD_R2.raw COAD PXD021755 batch1 Lumos_190225_P0814_MR_JB_HA1_lowEThcD_R1.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190225_P0814_MR_JB_HA1_lowEThcD_R1.raw " COAD PXD021755 batch1 Lumos_190225_P0814_MR_JB_HA2_EThcD_R2.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190225_P0814_MR_JB_HA2_EThcD_R2.raw COAD PXD021755 batch1 Lumos_190225_P0814_MR_JB_HA2_lowEThcD_R1.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190225_P0814_MR_JB_HA2_lowEThcD_R1.raw " COAD PXD021755 batch1 Lumos_190225_P0814_MR_JB_HA3_EThcD_R2.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190225_P0814_MR_JB_HA3_EThcD_R2.raw COAD PXD021755 batch2 Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1.raw HCT 116 5AZA A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190225_P0814_MR_JB_HA3_lowEThcD_R1.raw " COAD PXD021755 batch2 Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190225_P0814_MR_JB_HD1_lowEThcD_R1.raw " COAD PXD021755 batch2 Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190225_P0814_MR_JB_HD2_lowEThcD_R1.raw COAD PXD021755 batch2 Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/04/PXD021755/Lumos_190225_P0814_MR_JB_HD3_lowEThcD_R1.raw COAD phase2_PXD037587 171219_MG_HROC113_IFNy_W6_DDA_Rep1_400-650mz_msms36.raw HROC113_IFNy A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC113_IFNy_W6_DDA_Rep1_400-650mz_msms36.raw COAD phase2_PXD037587 171219_MG_HROC113_IFNy_W6_DDA_Rep2_400-650mz_msms37.raw HROC113_IFNy A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC113_IFNy_W6_DDA_Rep2_400-650mz_msms37.raw COAD phase2_PXD037587 171219_MG_HROC113_IFNy_W6_DDA_Rep3_400-650mz_msms38.raw HROC113_IFNy A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC113_IFNy_W6_DDA_Rep3_400-650mz_msms38.raw COAD phase2_PXD037587 171219_MG_HROC113_untreated_W6_DDA_Rep1_400-650mz_msms23.raw HROC113 A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC113_untreated_W6_DDA_Rep1_400-650mz_msms23.raw COAD phase2_PXD037587 171219_MG_HROC113_untreated_W6_DDA_Rep1new_400-650mz_msms28.raw HROC113 A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC113_untreated_W6_DDA_Rep1new_400-650mz_msms28.raw COAD phase2_PXD037587 171219_MG_HROC113_untreated_W6_DDA_Rep2_400-650mz_msms29.raw HROC113 A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC113_untreated_W6_DDA_Rep2_400-650mz_msms29.raw COAD phase2_PXD037587 171219_MG_HROC113_untreated_W6_DDA_Rep3_400-650mz_msms30.raw HROC113 A*01:01,A*02:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC113_untreated_W6_DDA_Rep3_400-650mz_msms30.raw COAD phase2_PXD037587 171219_MG_HROC285_IFNy_W6_DDA_Rep1_400-650mz_msms15.raw HROC285_IFNy A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC285_IFNy_W6_DDA_Rep1_400-650mz_msms15.raw COAD phase2_PXD037587 171219_MG_HROC285_IFNy_W6_DDA_Rep2_400-650mz_msms16.raw HROC285_IFNy A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC285_IFNy_W6_DDA_Rep2_400-650mz_msms16.raw COAD phase2_PXD037587 171219_MG_HROC285_IFNy_W6_DDA_Rep3_400-650mz_msms17.raw HROC285_IFNy A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC285_IFNy_W6_DDA_Rep3_400-650mz_msms17.raw COAD phase2_PXD037587 171219_MG_HROC285_untreated_W6_DDA_Rep1_400-650mz_msms7.raw HROC285 A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC285_untreated_W6_DDA_Rep1_400-650mz_msms7.raw COAD phase2_PXD037587 171219_MG_HROC285_untreated_W6_DDA_Rep2_400-650mz_msms8.raw HROC285 A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC285_untreated_W6_DDA_Rep2_400-650mz_msms8.raw COAD phase2_PXD037587 171219_MG_HROC285_untreated_W6_DDA_Rep3_400-650mz_msms9.raw HROC285 A*01:01,A*11:01,B*08:01,B*35:01,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587/171219_MG_HROC285_untreated_W6_DDA_Rep3_400-650mz_msms9.raw COAD phase2_PXD026573_JPST001211 ST239_CRC09_A24.raw CRC09_pMMR A*24:02 DDA https://storage.jpostdb.org/JPST001211/ST239_CRC09_A24.raw COAD phase2_PXD026573_JPST001211 ST467_CRC54_A24.raw CRC54_pMMR A*24:02 DDA https://storage.jpostdb.org/JPST001211/ST467_CRC54_A24.raw COAD phase2_PXD026573_JPST001211 ST468_CRC57_A24.raw CRC57_pMMR A*24:02 DDA https://storage.jpostdb.org/JPST001211/ST468_CRC57_A24.raw COAD phase2_PXD026573_JPST001211 ST469_CRC59_A24.raw CRC59_pMMR A*24:02 DDA https://storage.jpostdb.org/JPST001211/ST469_CRC59_A24.raw COAD phase2_PXD026573_JPST001211 ST547_CRC111_1_A24.raw CRC111_dMMR A*24:02 DDA https://storage.jpostdb.org/JPST001211/ST547_CRC111_1_A24.raw COAD phase2_PXD024533_JPST001104 ST503_Colo320_A24.raw Colo320 A*24:02 DDA https://storage.jpostdb.org/JPST001104/ST503_Colo320_A24.raw COAD phase2_PXD024533_JPST001104 ST419_CRC71_A24.raw CRC71 A*24:02 DDA https://storage.jpostdb.org/JPST001104/ST419_CRC71_A24.raw COAD phase2_PXD024533_JPST001104 ST544_CRC117_A24.raw CRC117 A*24:02 DDA https://storage.jpostdb.org/JPST001104/ST544_CRC117_A24.raw COAD phase2_PXD024533_JPST001104 ST545_CRC113_A24.raw CRC113 A*24:02 DDA https://storage.jpostdb.org/JPST001104/ST545_CRC113_A24.raw COAD phase2_PXD024533_JPST001104 ST546_CRC114_A24.raw CRC114 A*24:02 DDA https://storage.jpostdb.org/JPST001104/ST546_CRC114_A24.raw COAD phase2_PXD024533_JPST001104 ST600_CRC123_A24.raw CRC123 A*24:02 DDA https://storage.jpostdb.org/JPST001104/ST600_CRC123_A24.raw COAD phase2_PXD024533_JPST001104 ST594_CRC125_A24.raw CRC125 A*24:02 DDA https://storage.jpostdb.org/JPST001104/ST594_CRC125_A24.raw COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone1-IP1.raw CRC_PDO_hetero_T1 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone1-IP2.raw CRC_PDO_hetero_T1 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone1-IP3.raw CRC_PDO_hetero_T1 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone3-IP1.raw CRC_PDO_hetero_T3 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone3-IP2.raw CRC_PDO_hetero_T3 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone3-IP3.raw CRC_PDO_hetero_T3 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone4-IP1.raw CRC_PDO_hetero_T4 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone4-IP2.raw CRC_PDO_hetero_T4 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone4-IP3.raw CRC_PDO_hetero_T4 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone5-IP1-goodmethod.raw CRC_PDO_hetero_T5 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone5-IP2.raw CRC_PDO_hetero_T5 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180507_OR16_Ag6_5607264_SA_MHC_HCD_clone5-IP3.raw CRC_PDO_hetero_T5 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone1-IP1.raw CRC_PDO_hetero_T1 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone1-IP2.raw CRC_PDO_hetero_T1 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone1-IP3.raw CRC_PDO_hetero_T1 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone3-IP1.raw CRC_PDO_hetero_T3 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone3-IP2.raw CRC_PDO_hetero_T3 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone3-IP3.raw CRC_PDO_hetero_T3 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone4-IP1.raw CRC_PDO_hetero_T4 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone4-IP2.raw CRC_PDO_hetero_T4 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone4-IP3.raw CRC_PDO_hetero_T4 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone5-IP1.raw CRC_PDO_hetero_T5 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone5-IP2.raw CRC_PDO_hetero_T5 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD016582 20180516_L1_Ag2_5607264_SA_MHC_EThcD_clone5-IP3.raw CRC_PDO_hetero_T5 A*02:01,B*15:01,B*57:01,C*03:04,C*06:02 DDA COAD phase2_PXD015947 IRISS01_Tumor_HLAclassIW6-32_Rep1.raw IRISS01 A*24:02,A*66:01,B*27:01,B*44:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS01_Tumor_HLAclassIW6-32_Rep1.raw COAD phase2_PXD015947 IRISS01_Tumor_HLAclassIW6-32_Rep2.raw IRISS01 A*24:02,A*66:01,B*27:01,B*44:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS01_Tumor_HLAclassIW6-32_Rep2.raw COAD phase2_PXD015947 IRISS01_Tumor_HLAclassIW6-32_Rep3.raw IRISS01 A*24:02,A*66:01,B*27:01,B*44:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS01_Tumor_HLAclassIW6-32_Rep3.raw COAD phase2_PXD015947 IRISS01_Tumor_HLAclassIW6-32_Rep4.raw IRISS01 A*24:02,A*66:01,B*27:01,B*44:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS01_Tumor_HLAclassIW6-32_Rep4.raw COAD phase2_PXD015947 IRISS01_Tumor_HLAclassIW6-32_Rep5.raw IRISS01 A*24:02,A*66:01,B*27:01,B*44:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS01_Tumor_HLAclassIW6-32_Rep5.raw COAD phase2_PXD015947 IRISS05_Tumor_HLAclassIW6-32_Rep1.raw IRISS05 A*01:01,A*02:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS05_Tumor_HLAclassIW6-32_Rep1.raw COAD phase2_PXD015947 IRISS05_Tumor_HLAclassIW6-32_Rep2.raw IRISS05 A*01:01,A*02:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS05_Tumor_HLAclassIW6-32_Rep2.raw COAD phase2_PXD015947 IRISS05_Tumor_HLAclassIW6-32_Rep3.raw IRISS05 A*01:01,A*02:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS05_Tumor_HLAclassIW6-32_Rep3.raw COAD phase2_PXD015947 IRISS06_Tumor_HLAclassIW6-32_Rep1.raw IRISS06 A*02:01,A*24:02,B*15:01,B*35:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS06_Tumor_HLAclassIW6-32_Rep1.raw COAD phase2_PXD015947 IRISS06_Tumor_HLAclassIW6-32_Rep2.raw IRISS06 A*02:01,A*24:02,B*15:01,B*35:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS06_Tumor_HLAclassIW6-32_Rep2.raw COAD phase2_PXD015947 IRISS06_Tumor_HLAclassIW6-32_Rep3.raw IRISS06 A*02:01,A*24:02,B*15:01,B*35:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS06_Tumor_HLAclassIW6-32_Rep3.raw COAD phase2_PXD015947 IRISS08_Tumor_HLAclassIW6-32_Rep1.raw IRISS08 A*02:01,A*33:01,B*14:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS08_Tumor_HLAclassIW6-32_Rep1.raw COAD phase2_PXD015947 IRISS08_Tumor_HLAclassIW6-32_Rep2.raw IRISS08 A*02:01,A*33:01,B*14:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS08_Tumor_HLAclassIW6-32_Rep2.raw COAD phase2_PXD015947 IRISS08_Tumor_HLAclassIW6-32_Rep3.raw IRISS08 A*02:01,A*33:01,B*14:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS08_Tumor_HLAclassIW6-32_Rep3.raw COAD phase2_PXD015947 IRISS09_Tumor_HLAclassIW6-32_Rep1.raw IRISS09 A*01:01,B*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS09_Tumor_HLAclassIW6-32_Rep1.raw COAD phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep1.raw IRISS12 A*01:01,A*02:01,B*08:01,B*27:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS12_Tumor_HLAclassIW6-32_Rep1.raw COAD phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep2.raw IRISS12 A*01:01,A*02:01,B*08:01,B*27:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS12_Tumor_HLAclassIW6-32_Rep2.raw COAD phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep3.raw IRISS12 A*01:01,A*02:01,B*08:01,B*27:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS12_Tumor_HLAclassIW6-32_Rep3.raw COAD phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep4.raw IRISS12 A*01:01,A*02:01,B*08:01,B*27:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS12_Tumor_HLAclassIW6-32_Rep4.raw COAD phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep5.raw IRISS12 A*01:01,A*02:01,B*08:01,B*27:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS12_Tumor_HLAclassIW6-32_Rep5.raw COAD phase2_PXD015947 IRISS12_Tumor_HLAclassIW6-32_Rep6.raw IRISS12 A*01:01,A*02:01,B*08:01,B*27:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/12/PXD015947/IRISS12_Tumor_HLAclassIW6-32_Rep6.raw COAD phase2_PXD023770_JPST001072 191206_HCT116_HLAp_1ul_Replicate1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001072/191206_HCT116_HLAp_1ul_Replicate1.raw COAD phase2_PXD023770_JPST001072 191206_HCT116_HLAp_1ul_Replicate2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001072/191206_HCT116_HLAp_1ul_Replicate2.raw COAD phase2_PXD023770_JPST001072 191206_HCT116_HLAp_1ul_Replicate3.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001072/191206_HCT116_HLAp_1ul_Replicate3.raw COAD phase2_PXD023770_JPST001072 191206_HCT116_HLAp_2ul_Raplicate3.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001072/191206_HCT116_HLAp_2ul_Raplicate3.raw COAD phase2_PXD023770_JPST001072 191206_HCT116_HLAp_2ul_Replicate1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001072/191206_HCT116_HLAp_2ul_Replicate1.raw COAD phase2_PXD023770_JPST001072 191206_HCT116_HLAp_2ul_Replicate2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001072/191206_HCT116_HLAp_2ul_Replicate2.raw COAD phase2_PXD023770_JPST001072 191206_HCT116_HLAp_3ul_Replicate1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001072/191206_HCT116_HLAp_3ul_Replicate1.raw COAD phase2_PXD023770_JPST001072 191206_HCT116_HLAp_3ul_Replicate2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001072/191206_HCT116_HLAp_3ul_Replicate2.raw COAD phase2_PXD023770_JPST001072 191206_HCT116_HLAp_3ul_Replicate3.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001072/191206_HCT116_HLAp_3ul_Replicate3.raw COAD phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_1ul_CVSet1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001066/191216_HCT116_HLAp_1ul_CVSet1.raw COAD phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_1ul_CVSet2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001066/191216_HCT116_HLAp_1ul_CVSet2.raw COAD phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_1ul_CVSet3.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001066/191216_HCT116_HLAp_1ul_CVSet3.raw COAD phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_2ul_CVSet1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001066/191216_HCT116_HLAp_2ul_CVSet1.raw COAD phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_2ul_CVSet2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001066/191216_HCT116_HLAp_2ul_CVSet2.raw COAD phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_2ul_CVSet3.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "https://storage.jpostdb.org/JPST001066/191216_HCT116_HLAp_2ul_CVSet3.raw " COAD phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_3ul_CVSet1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "https://storage.jpostdb.org/JPST001066/191216_HCT116_HLAp_3ul_CVSet1.raw " COAD phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_3ul_CVSet2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA "https://storage.jpostdb.org/JPST001066/191216_HCT116_HLAp_3ul_CVSet2.raw " COAD phase2_PXD023771_JPST001066_faims 191216_HCT116_HLAp_3ul_CVSet3.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001066/191216_HCT116_HLAp_3ul_CVSet3.raw COAD phase2_PXD023773_JPST001068_faims 200205_HCT116_5ul_CVSet1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001068/200205_HCT116_5ul_CVSet1.raw COAD phase2_PXD023773_JPST001068_faims 200205_HCT116_5ul_CVSet2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001068/200205_HCT116_5ul_CVSet2.raw COAD phase2_PXD023773_JPST001068_faims 200205_HCT116_5ul_CVSet3.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001068/200205_HCT116_5ul_CVSet3.raw COAD phase2_PXD023773_JPST001068_faims 200714_HCT116_1ul_CVSet1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001068/200714_HCT116_1ul_CVSet1.raw COAD phase2_PXD023773_JPST001068_faims 200714_HCT116_1ul_CVSet2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001068/200714_HCT116_1ul_CVSet2.raw COAD phase2_PXD023773_JPST001068_faims 200714_HCT116_1ul_CVSet3.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001068/200714_HCT116_1ul_CVSet3.raw COAD phase2_PXD023773_JPST001068_faims 200715_HCT116_5ul_CVSet1.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001068/200715_HCT116_5ul_CVSet1.raw COAD phase2_PXD023773_JPST001068_faims 200715_HCT116_5ul_CVSet2.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001068/200715_HCT116_5ul_CVSet2.raw COAD phase2_PXD023773_JPST001068_faims 200715_HCT116_5ul_CVSet3.raw HCT 116 A*01:01,A*02:01,B*18:01,B*45:01,C*05:01,C*07:01 DDA https://storage.jpostdb.org/JPST001068/200715_HCT116_5ul_CVSet3.raw COAD PXD023805_JPST001069_faims batch15 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_51T.raw 51T A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_51T.raw COAD PXD023805_JPST001069_faims batch15 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_51T.raw 51T A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_51T.raw COAD PXD023805_JPST001069_faims batch15 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_51T.raw 51T A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_51T.raw COAD PXD023805_JPST001069_faims batch15 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_51T.raw 51T A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_51T.raw COAD PXD023805_JPST001069_faims batch15 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_51T.raw 51T A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_51T.raw COAD PXD023805_JPST001069_faims batch15 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_51T.raw 51T A*02:07,A*11:01,B*40:01,B*46:01,C*01:02,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_51T.raw COAD PXD023805_JPST001069_faims batch16 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_60T.raw 60T A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_60T.raw COAD PXD023805_JPST001069_faims batch16 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_60T.raw 60T A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_60T.raw COAD PXD023805_JPST001069_faims batch16 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_60T.raw 60T A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_60T.raw COAD PXD023805_JPST001069_faims batch16 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_60T.raw 60T A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_60T.raw COAD PXD023805_JPST001069_faims batch16 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_60T.raw 60T A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_60T.raw COAD PXD023805_JPST001069_faims batch16 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_60T.raw 60T A*11:01,A*24:02,B*15:01,B*40:01,C*03:04,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_60T.raw COAD PXD023805_JPST001069_faims batch17 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_78T.raw 78T A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_78T.raw COAD PXD023805_JPST001069_faims batch17 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_78T.raw 78T A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_78T.raw COAD PXD023805_JPST001069_faims batch17 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_78T.raw 78T A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_78T.raw COAD PXD023805_JPST001069_faims batch17 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_78T.raw 78T A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_78T.raw COAD PXD023805_JPST001069_faims batch17 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_78T.raw 78T A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_78T.raw COAD PXD023805_JPST001069_faims batch17 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_78T.raw 78T A*02:01,A*24:02,B*40:01,B*52:01,C*07:02,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_78T.raw COAD PXD023805_JPST001069_faims batch1 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_84T.raw 84T_KRAS_G13D A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_84T.raw COAD PXD023805_JPST001069_faims batch1 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_84T.raw 84T_KRAS_G13D A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_84T.raw COAD PXD023805_JPST001069_faims batch1 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_84T.raw 84T_KRAS_G13D A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_84T.raw COAD PXD023805_JPST001069_faims batch1 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_84T.raw 84T_KRAS_G13D A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_84T.raw COAD PXD023805_JPST001069_faims batch1 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_84T.raw 84T_KRAS_G13D A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_84T.raw COAD PXD023805_JPST001069_faims batch1 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_84T.raw 84T_KRAS_G13D A*11:01,A*24:02,B*54:01,B*59:01,C*01:02,C*01:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_84T.raw COAD PXD023805_JPST001069_faims batch2 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_103T.raw 103T_KRAS_G12V A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_103T.raw COAD PXD023805_JPST001069_faims batch2 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_103T.raw 103T_KRAS_G12V A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_103T.raw COAD PXD023805_JPST001069_faims batch2 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_103T.raw 103T_KRAS_G12V A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_103T.raw COAD PXD023805_JPST001069_faims batch2 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_103T.raw 103T_KRAS_G12V A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_103T.raw COAD PXD023805_JPST001069_faims batch2 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_103T.raw 103T_KRAS_G12V A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_103T.raw COAD PXD023805_JPST001069_faims batch2 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_103T.raw 103T_KRAS_G12V A*24:02,A*26:01,B*40:02,B*52:01,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_103T.raw COAD PXD023805_JPST001069_faims batch3 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_107T.raw 107T_KRAS_G12D A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_107T.raw COAD PXD023805_JPST001069_faims batch3 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_107T.raw 107T_KRAS_G12D A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_107T.raw COAD PXD023805_JPST001069_faims batch3 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_107T.raw 107T_KRAS_G12D A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_107T.raw COAD PXD023805_JPST001069_faims batch3 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_107T.raw 107T_KRAS_G12D A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_107T.raw COAD PXD023805_JPST001069_faims batch3 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_107T.raw 107T_KRAS_G12D A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_107T.raw COAD PXD023805_JPST001069_faims batch3 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_107T.raw 107T_KRAS_G12D A*02:01,A*24:02,B*15:01,B*40:02,C*03:04,C*08:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_107T.raw COAD PXD023805_JPST001069_faims batch4 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_112T.raw 112T_KRAS_G12D A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_112T.raw COAD PXD023805_JPST001069_faims batch4 200727_Lumos_FAIMS_CID_IT_CVSet1_Approx4ul_112T.raw 112T_KRAS_G12D A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_Approx4ul_112T.raw COAD PXD023805_JPST001069_faims batch4 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_112T.raw 112T_KRAS_G12D A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_112T.raw COAD PXD023805_JPST001069_faims batch4 200727_Lumos_FAIMS_CID_IT_CVSet2_Approx4ul_112T.raw 112T_KRAS_G12D A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_Approx4ul_112T.raw COAD PXD023805_JPST001069_faims batch4 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_112T.raw 112T_KRAS_G12D A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_112T.raw COAD PXD023805_JPST001069_faims batch4 200727_Lumos_FAIMS_CID_IT_CVSet3_Approx4ul_112T.raw 112T_KRAS_G12D A*02:01,A*26:01,B*15:01,B*55:02,C*01:02,C*04:01 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_Approx4ul_112T.raw COAD PXD023805_JPST001069_faims batch5 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_119T.raw 119T_KRAS_G13D A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_119T.raw COAD PXD023805_JPST001069_faims batch5 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_119T.raw 119T_KRAS_G13D A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_119T.raw COAD PXD023805_JPST001069_faims batch5 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_119T.raw 119T_KRAS_G13D A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_119T.raw COAD PXD023805_JPST001069_faims batch5 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_119T.raw 119T_KRAS_G13D A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_119T.raw COAD PXD023805_JPST001069_faims batch5 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_119T.raw 119T_KRAS_G13D A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_119T.raw COAD PXD023805_JPST001069_faims batch5 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_119T.raw 119T_KRAS_G13D A*24:02,A*33:03,B*44:03,B*55:02,C*01:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_119T.raw COAD PXD023805_JPST001069_faims batch6 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T.raw 172T_KRAS_G12V A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03 DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_172T.raw COAD PXD023805_JPST001069_faims batch6 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T.raw 172T_KRAS_G12V A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03 DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_172T.raw COAD PXD023805_JPST001069_faims batch6 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T.raw 172T_KRAS_G12V A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03 DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_172T.raw COAD PXD023805_JPST001069_faims batch6 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T.raw 172T_KRAS_G12V A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03 DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_172T.raw COAD PXD023805_JPST001069_faims batch6 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T.raw 172T_KRAS_G12V A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03 DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_172T.raw COAD PXD023805_JPST001069_faims batch6 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T.raw 172T_KRAS_G12V A*11:01,A*24:02,B*35:01,B*40:02,C*01:02,C*03:03 DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_172T.raw COAD PXD023805_JPST001069_faims batch7 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_229T.raw 229T A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_229T.raw COAD PXD023805_JPST001069_faims batch7 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_229T.raw 229T A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_229T.raw COAD PXD023805_JPST001069_faims batch7 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_229T.raw 229T A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_229T.raw COAD PXD023805_JPST001069_faims batch7 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_229T.raw 229T A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_229T.raw COAD PXD023805_JPST001069_faims batch7 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_229T.raw 229T A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_229T.raw COAD PXD023805_JPST001069_faims batch7 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_229T.raw 229T A*24:02,A*33:03,B*15:18,B*44:03,C*07:04,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_229T.raw COAD PXD023805_JPST001069_faims batch8 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_241T.raw 241T A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_241T.raw COAD PXD023805_JPST001069_faims batch8 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_241T.raw 241T A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_241T.raw COAD PXD023805_JPST001069_faims batch8 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_241T.raw 241T A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_241T.raw COAD PXD023805_JPST001069_faims batch8 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_241T.raw 241T A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_241T.raw COAD PXD023805_JPST001069_faims batch8 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_241T.raw 241T A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_241T.raw COAD PXD023805_JPST001069_faims batch8 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_241T.raw 241T A*24:02,A*33:03,B*40:01,B*40:06,C*03:04,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_241T.raw COAD PXD023805_JPST001069_faims batch9 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_256T.raw 256T_KRAS_G12D A*02:01,A*02:06,B*35:01,B*38:02,C*03:03,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_256T.raw COAD PXD023805_JPST001069_faims batch9 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_256T.raw 256T_KRAS_G12D A*02:01,A*02:06,B*35:01,B*38:02,C*03:03,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_256T.raw COAD PXD023805_JPST001069_faims batch9 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_256T.raw 256T_KRAS_G12D A*02:01,A*02:06,B*35:01,B*38:02,C*03:03,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_256T.raw COAD PXD023805_JPST001069_faims batch9 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_256T.raw 256T_KRAS_G12D A*02:01,A*02:06,B*35:01,B*38:02,C*03:03,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_256T.raw COAD PXD023805_JPST001069_faims batch9 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_256T.raw 256T_KRAS_G12D A*02:01,A*02:06,B*35:01,B*38:02,C*03:03,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_256T.raw COAD PXD023805_JPST001069_faims batch9 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_256T.raw 256T_KRAS_G12D A*02:01,A*02:06,B*35:01,B*38:02,C*03:03,C*07:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_256T.raw COAD PXD023805_JPST001069_faims batch10 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_257T.raw 257T_KRAS_G12V A*02:01,A*24:02,B*15:01,B*52:01,C*03:03,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_257T.raw COAD PXD023805_JPST001069_faims batch10 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_257T.raw 257T_KRAS_G12V A*02:01,A*24:02,B*15:01,B*52:01,C*03:03,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_257T.raw COAD PXD023805_JPST001069_faims batch10 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_257T.raw 257T_KRAS_G12V A*02:01,A*24:02,B*15:01,B*52:01,C*03:03,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_257T.raw COAD PXD023805_JPST001069_faims batch10 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_257T.raw 257T_KRAS_G12V A*02:01,A*24:02,B*15:01,B*52:01,C*03:03,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_257T.raw COAD PXD023805_JPST001069_faims batch10 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_257T.raw 257T_KRAS_G12V A*02:01,A*24:02,B*15:01,B*52:01,C*03:03,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_257T.raw COAD PXD023805_JPST001069_faims batch10 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_257T.raw 257T_KRAS_G12V A*02:01,A*24:02,B*15:01,B*52:01,C*03:03,C*12:02 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_257T.raw COAD PXD023805_JPST001069_faims batch11 200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_258T.raw 258T_KRAS_G12D A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_1ul_258T.raw COAD PXD023805_JPST001069_faims batch11 200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_258T.raw 258T_KRAS_G12D A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet1_5ul_258T.raw COAD PXD023805_JPST001069_faims batch11 200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_258T.raw 258T_KRAS_G12D A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_1ul_258T.raw COAD PXD023805_JPST001069_faims batch11 200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_258T.raw 258T_KRAS_G12D A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet2_5ul_258T.raw COAD PXD023805_JPST001069_faims batch11 200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_258T.raw 258T_KRAS_G12D A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_1ul_258T.raw COAD PXD023805_JPST001069_faims batch11 200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_258T.raw 258T_KRAS_G12D A*24:02,A*33:03,B*44:03,B*52:01,C*12:02,C*14:03 excluded DDA https://storage.jpostdb.org/JPST001069/200727_Lumos_FAIMS_CID_IT_CVSet3_5ul_258T.raw COAD PXD023805_JPST001069_faims batch12 200714_Lumos_FAIMS_CID_IT_CVSet1_1ul_259HT1.raw 259HT1 A*02:01,A*02:01,B*44:02,B*55:02,C*01:02,C*05:01 excluded DDA https://storage.jpostdb.org/JPST001069/200714_Lumos_FAIMS_CID_IT_CVSet1_1ul_259HT1.raw COAD PXD023805_JPST001069_faims batch12 200714_Lumos_FAIMS_CID_IT_CVSet2_1ul_259HT1.raw 259HT1 A*02:01,A*02:01,B*44:02,B*55:02,C*01:02,C*05:01 excluded DDA https://storage.jpostdb.org/JPST001069/200714_Lumos_FAIMS_CID_IT_CVSet2_1ul_259HT1.raw COAD PXD023805_JPST001069_faims batch12 200714_Lumos_FAIMS_CID_IT_CVSet3_1ul_259HT1.raw 259HT1 A*02:01,A*02:01,B*44:02,B*55:02,C*01:02,C*05:01 excluded DDA https://storage.jpostdb.org/JPST001069/200714_Lumos_FAIMS_CID_IT_CVSet3_1ul_259HT1.raw COAD PXD023805_JPST001069_faims batch12 200715_Lumos_FAIMS_CID_IT_CVSet1_5ul_259HT1.raw 259HT1 A*02:01,A*02:01,B*44:02,B*55:02,C*01:02,C*05:01 excluded DDA 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ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_21_HLA-class_I_CRC_(malignant)_Rep#3.raw COAD phase2_PXD009602 UPN_21_HLA-class_I_CRC_(malignant)_Rep#4.raw UPN21 A*01:01,B*44:03,B*55:01,C*03:03,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_21_HLA-class_I_CRC_(malignant)_Rep#4.raw COAD phase2_PXD009602 UPN_21_HLA-class_I_CRC_(malignant)_Rep#5.raw UPN21 A*01:01,B*44:03,B*55:01,C*03:03,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_21_HLA-class_I_CRC_(malignant)_Rep#5.raw COAD phase2_PXD009602 UPN_22_HLA-class_I_CRC_(malignant)_PA_(pre-adjustment).raw UPN22 A*01:01,A*03:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_22_HLA-class_I_CRC_(malignant)_PA_(pre-adjustment).RAW COAD phase2_PXD009602 UPN_22_HLA-class_I_CRC_(malignant)_R#1_(remnant).raw UPN22 A*01:01,A*03:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_22_HLA-class_I_CRC_(malignant)_R#1_(remnant).RAW COAD phase2_PXD009602 UPN_22_HLA-class_I_CRC_(malignant)_R#2_(remnant).raw UPN22 A*01:01,A*03:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_22_HLA-class_I_CRC_(malignant)_R#2_(remnant).RAW COAD phase2_PXD009602 UPN_22_HLA-class_I_CRC_(malignant)_R#3_(remnant).raw UPN22 A*01:01,A*03:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_22_HLA-class_I_CRC_(malignant)_R#3_(remnant).RAW COAD phase2_PXD009602 UPN_22_HLA-class_I_CRC_(malignant)_Rep#1.raw UPN22 A*01:01,A*03:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_22_HLA-class_I_CRC_(malignant)_Rep#1.RAW COAD phase2_PXD009602 UPN_22_HLA-class_I_CRC_(malignant)_Rep#2.raw UPN22 A*01:01,A*03:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_22_HLA-class_I_CRC_(malignant)_Rep#2.RAW COAD phase2_PXD009602 UPN_22_HLA-class_I_CRC_(malignant)_Rep#3.raw UPN22 A*01:01,A*03:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_22_HLA-class_I_CRC_(malignant)_Rep#3.RAW COAD phase2_PXD009602 UPN_22_HLA-class_I_CRC_(malignant)_Rep#4.raw UPN22 A*01:01,A*03:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_22_HLA-class_I_CRC_(malignant)_Rep#4.RAW COAD phase2_PXD009602 UPN_22_HLA-class_I_CRC_(malignant)_Rep#5.raw UPN22 A*01:01,A*03:01,B*08:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_22_HLA-class_I_CRC_(malignant)_Rep#5.RAW COAD phase2_PXD009602 UPN_23_HLA-class_I_CRC_(malignant)_Rep#1.raw UPN23 A*02:01,A*03:01,B*15:01,B*40:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_23_HLA-class_I_CRC_(malignant)_Rep#1.RAW COAD phase2_PXD009602 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ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_2_HLA-class_I_CRC_(malignant)_PA_(pre-adjustment).RAW COAD phase2_PXD009602 UPN_2_HLA-class_I_CRC_(malignant)_Rep#1.raw UPN2 A*01:01,A*26:01,B*41:01,B*49:01,C*07:01,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_2_HLA-class_I_CRC_(malignant)_Rep#1.RAW COAD phase2_PXD009602 UPN_2_HLA-class_I_CRC_(malignant)_Rep#2.raw UPN2 A*01:01,A*26:01,B*41:01,B*49:01,C*07:01,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_2_HLA-class_I_CRC_(malignant)_Rep#2.RAW COAD phase2_PXD009602 UPN_2_HLA-class_I_CRC_(malignant)_Rep#3.raw UPN2 A*01:01,A*26:01,B*41:01,B*49:01,C*07:01,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_2_HLA-class_I_CRC_(malignant)_Rep#3.RAW COAD phase2_PXD009602 UPN_2_HLA-class_I_CRC_(malignant)_Rep#4.raw UPN2 A*01:01,A*26:01,B*41:01,B*49:01,C*07:01,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_2_HLA-class_I_CRC_(malignant)_Rep#4.RAW COAD phase2_PXD009602 UPN_2_HLA-class_I_CRC_(malignant)_Rep#5.raw UPN2 A*01:01,A*26:01,B*41:01,B*49:01,C*07:01,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_2_HLA-class_I_CRC_(malignant)_Rep#5.RAW COAD phase2_PXD009602 UPN_30_HLA-class_I_CRC_(malignant)_Rep#1.raw UPN30 A*03:01,A*11:01,B*07:02,B*51:01,C*07:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_30_HLA-class_I_CRC_(malignant)_Rep#1.RAW COAD phase2_PXD009602 UPN_30_HLA-class_I_CRC_(malignant)_Rep#2.raw UPN30 A*03:01,A*11:01,B*07:02,B*51:01,C*07:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_30_HLA-class_I_CRC_(malignant)_Rep#2.RAW COAD phase2_PXD009602 UPN_30_HLA-class_I_CRC_(malignant)_Rep#3.raw UPN30 A*03:01,A*11:01,B*07:02,B*51:01,C*07:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_30_HLA-class_I_CRC_(malignant)_Rep#3.RAW COAD phase2_PXD009602 UPN_30_HLA-class_I_CRC_(malignant)_Rep#4.raw UPN30 A*03:01,A*11:01,B*07:02,B*51:01,C*07:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_30_HLA-class_I_CRC_(malignant)_Rep#4.RAW COAD phase2_PXD009602 UPN_30_HLA-class_I_CRC_(malignant)_Rep#5.raw UPN30 A*03:01,A*11:01,B*07:02,B*51:01,C*07:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_30_HLA-class_I_CRC_(malignant)_Rep#5.RAW COAD phase2_PXD009602 UPN_3_HLA-class_I_CRC_(malignant)_PA_(pre-adjustment).raw UPN3 A*02:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_3_HLA-class_I_CRC_(malignant)_PA_(pre-adjustment).RAW COAD phase2_PXD009602 UPN_3_HLA-class_I_CRC_(malignant)_Rep#1.raw UPN3 A*02:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_3_HLA-class_I_CRC_(malignant)_Rep#1.RAW COAD phase2_PXD009602 UPN_3_HLA-class_I_CRC_(malignant)_Rep#2.raw UPN3 A*02:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_3_HLA-class_I_CRC_(malignant)_Rep#2.RAW COAD phase2_PXD009602 UPN_3_HLA-class_I_CRC_(malignant)_Rep#3.raw UPN3 A*02:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_3_HLA-class_I_CRC_(malignant)_Rep#3.RAW COAD phase2_PXD009602 UPN_3_HLA-class_I_CRC_(malignant)_Rep#4.raw UPN3 A*02:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_3_HLA-class_I_CRC_(malignant)_Rep#4.RAW COAD phase2_PXD009602 UPN_3_HLA-class_I_CRC_(malignant)_Rep#5.raw UPN3 A*02:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_3_HLA-class_I_CRC_(malignant)_Rep#5.RAW COAD phase2_PXD009602 UPN_3_HLA-class_I_CRC_(malignant)_R_(remnant).raw UPN3 A*02:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_3_HLA-class_I_CRC_(malignant)_R_(remnant).RAW COAD phase2_PXD009602 UPN_4_HLA-class_I_CRC_(malignant)_PA_(pre-adjustment).raw UPN4 A*24:02,A*32:01,B*07:02,B*44:02,C*05:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_4_HLA-class_I_CRC_(malignant)_PA_(pre-adjustment).RAW COAD phase2_PXD009602 UPN_4_HLA-class_I_CRC_(malignant)_Rep#1.raw UPN4 A*24:02,A*32:01,B*07:02,B*44:02,C*05:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_4_HLA-class_I_CRC_(malignant)_Rep#1.RAW COAD phase2_PXD009602 UPN_4_HLA-class_I_CRC_(malignant)_Rep#2.raw UPN4 A*24:02,A*32:01,B*07:02,B*44:02,C*05:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_4_HLA-class_I_CRC_(malignant)_Rep#2.RAW COAD phase2_PXD009602 UPN_4_HLA-class_I_CRC_(malignant)_Rep#3.raw UPN4 A*24:02,A*32:01,B*07:02,B*44:02,C*05:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_4_HLA-class_I_CRC_(malignant)_Rep#3.RAW COAD phase2_PXD009602 UPN_4_HLA-class_I_CRC_(malignant)_Rep#4.raw UPN4 A*24:02,A*32:01,B*07:02,B*44:02,C*05:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_4_HLA-class_I_CRC_(malignant)_Rep#4.RAW COAD phase2_PXD009602 UPN_4_HLA-class_I_CRC_(malignant)_Rep#5.raw UPN4 A*24:02,A*32:01,B*07:02,B*44:02,C*05:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_4_HLA-class_I_CRC_(malignant)_Rep#5.RAW COAD phase2_PXD009602 UPN_4_HLA-class_I_CRC_(malignant)_Rep#6.raw UPN4 A*24:02,A*32:01,B*07:02,B*44:02,C*05:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_4_HLA-class_I_CRC_(malignant)_Rep#6.RAW COAD phase2_PXD009602 UPN_4_HLA-class_I_CRC_(malignant)_Rep#7.raw UPN4 A*24:02,A*32:01,B*07:02,B*44:02,C*05:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_4_HLA-class_I_CRC_(malignant)_Rep#7.RAW COAD phase2_PXD009602 UPN_5_HLA-class_I_CRC_(malignant)_Rep#1.raw UPN5 A*01:01,A*02:01,B*15:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_5_HLA-class_I_CRC_(malignant)_Rep#1.RAW COAD phase2_PXD009602 UPN_5_HLA-class_I_CRC_(malignant)_Rep#2.raw UPN5 A*01:01,A*02:01,B*15:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_5_HLA-class_I_CRC_(malignant)_Rep#2.RAW COAD phase2_PXD009602 UPN_5_HLA-class_I_CRC_(malignant)_Rep#3.raw UPN5 A*01:01,A*02:01,B*15:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_5_HLA-class_I_CRC_(malignant)_Rep#3.RAW COAD phase2_PXD009602 UPN_5_HLA-class_I_CRC_(malignant)_Rep#4.raw UPN5 A*01:01,A*02:01,B*15:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_5_HLA-class_I_CRC_(malignant)_Rep#4.RAW COAD phase2_PXD009602 UPN_6_HLA-class_I_CRC_(malignant)_Rep#1.raw UPN6 A*02:01,A*32:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_6_HLA-class_I_CRC_(malignant)_Rep#1.raw COAD phase2_PXD009602 UPN_6_HLA-class_I_CRC_(malignant)_Rep#2.raw UPN6 A*02:01,A*32:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_6_HLA-class_I_CRC_(malignant)_Rep#2.raw COAD phase2_PXD009602 UPN_6_HLA-class_I_CRC_(malignant)_Rep#3.raw UPN6 A*02:01,A*32:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_6_HLA-class_I_CRC_(malignant)_Rep#3.raw COAD phase2_PXD009602 UPN_6_HLA-class_I_CRC_(malignant)_Rep#4.raw UPN6 A*02:01,A*32:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_6_HLA-class_I_CRC_(malignant)_Rep#4.raw COAD phase2_PXD009602 UPN_6_HLA-class_I_CRC_(malignant)_Rep#5.raw UPN6 A*02:01,A*32:01,B*44:02,B*51:01,C*05:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_6_HLA-class_I_CRC_(malignant)_Rep#5.raw COAD phase2_PXD009602 UPN_7_HLA-class_I_CRC_(malignant)_R#1_(remnant).raw UPN7 A*03:01,A*68:01,B*51:01,B*57:02,C*15:02,C*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_7_HLA-class_I_CRC_(malignant)_R#1_(remnant).RAW COAD phase2_PXD009602 UPN_7_HLA-class_I_CRC_(malignant)_R#2_(remnant).raw UPN7 A*03:01,A*68:01,B*51:01,B*57:02,C*15:02,C*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_7_HLA-class_I_CRC_(malignant)_R#2_(remnant).RAW COAD phase2_PXD009602 UPN_7_HLA-class_I_CRC_(malignant)_R#3_(remnant).raw UPN7 A*03:01,A*68:01,B*51:01,B*57:02,C*15:02,C*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_7_HLA-class_I_CRC_(malignant)_R#3_(remnant).RAW COAD phase2_PXD009602 UPN_7_HLA-class_I_CRC_(malignant)_Rep#1.raw UPN7 A*03:01,A*68:01,B*51:01,B*57:02,C*15:02,C*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_7_HLA-class_I_CRC_(malignant)_Rep#1.RAW COAD phase2_PXD009602 UPN_7_HLA-class_I_CRC_(malignant)_Rep#2.raw UPN7 A*03:01,A*68:01,B*51:01,B*57:02,C*15:02,C*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_7_HLA-class_I_CRC_(malignant)_Rep#2.RAW COAD phase2_PXD009602 UPN_7_HLA-class_I_CRC_(malignant)_Rep#3.raw UPN7 A*03:01,A*68:01,B*51:01,B*57:02,C*15:02,C*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_7_HLA-class_I_CRC_(malignant)_Rep#3.RAW COAD phase2_PXD009602 UPN_7_HLA-class_I_CRC_(malignant)_Rep#4.raw UPN7 A*03:01,A*68:01,B*51:01,B*57:02,C*15:02,C*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_7_HLA-class_I_CRC_(malignant)_Rep#4.RAW COAD phase2_PXD009602 UPN_7_HLA-class_I_CRC_(malignant)_Rep#5.raw UPN7 A*03:01,A*68:01,B*51:01,B*57:02,C*15:02,C*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_7_HLA-class_I_CRC_(malignant)_Rep#5.RAW COAD phase2_PXD009602 UPN_8_HLA-class_I_CRC_(malignant)_Rep#1.raw UPN8 A*03:01,A*32:01,B*07:02,B*13:02,C*07:02,C*16:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_8_HLA-class_I_CRC_(malignant)_Rep#1.RAW COAD phase2_PXD009602 UPN_8_HLA-class_I_CRC_(malignant)_Rep#2.raw UPN8 A*03:01,A*32:01,B*07:02,B*13:02,C*07:02,C*16:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_8_HLA-class_I_CRC_(malignant)_Rep#2.RAW COAD phase2_PXD009602 UPN_8_HLA-class_I_CRC_(malignant)_Rep#3.raw UPN8 A*03:01,A*32:01,B*07:02,B*13:02,C*07:02,C*16:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_8_HLA-class_I_CRC_(malignant)_Rep#3.RAW COAD phase2_PXD009602 UPN_8_HLA-class_I_CRC_(malignant)_Rep#4.raw UPN8 A*03:01,A*32:01,B*07:02,B*13:02,C*07:02,C*16:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_8_HLA-class_I_CRC_(malignant)_Rep#4.RAW COAD phase2_PXD009602 UPN_8_HLA-class_I_CRC_(malignant)_Rep#5.raw UPN8 A*03:01,A*32:01,B*07:02,B*13:02,C*07:02,C*16:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_8_HLA-class_I_CRC_(malignant)_Rep#5.RAW COAD phase2_PXD009602 UPN_9_HLA-class_I_CRC_(malignant)_Rep#1.raw UPN9 A*02:01,A*31:02,B*13:02,B*51:05,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_9_HLA-class_I_CRC_(malignant)_Rep#1.RAW COAD phase2_PXD009602 UPN_9_HLA-class_I_CRC_(malignant)_Rep#2.raw UPN9 A*02:01,A*31:02,B*13:02,B*51:05,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_9_HLA-class_I_CRC_(malignant)_Rep#2.RAW COAD phase2_PXD009602 UPN_9_HLA-class_I_CRC_(malignant)_Rep#3.raw UPN9 A*02:01,A*31:02,B*13:02,B*51:05,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_9_HLA-class_I_CRC_(malignant)_Rep#3.RAW COAD phase2_PXD009602 UPN_9_HLA-class_I_CRC_(malignant)_Rep#4.raw UPN9 A*02:01,A*31:02,B*13:02,B*51:05,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_9_HLA-class_I_CRC_(malignant)_Rep#4.RAW COAD phase2_PXD009602 UPN_9_HLA-class_I_CRC_(malignant)_Rep#5.raw UPN9 A*02:01,A*31:02,B*13:02,B*51:05,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD009602/UPN_9_HLA-class_I_CRC_(malignant)_Rep#5.RAW COAD phase2_PXD071022 1055698F_CRC_200323_1.raw 1055698F_KRAS_G12V_MSI-H A*02:01,A*03:01,B*07:02,C*07:02 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2026/05/PXD071022/1055698F_CRC_200323_1.raw 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ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/09/PXD038273/Jacopo_Mesothelioma_Ligandome_MSTO211H_20210408_10ul_21-05-04_3890.d.zip MESO PXD038273 batch2 Mesothelioma_Ligandome_2022may_Meso1_001_22-05-30_5920.d Meso_001 A*02:01,A*68:01,B*08:01,B*51:01,C*07:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/09/PXD038273/Mesothelioma_Ligandome_2022may_Meso1_001_22-05-30_5920.d.zip MESO PXD038273 batch2 Mesothelioma_Ligandome_2022may_Meso2_002pellet1_22-05-30_5922.d Meso_002 A*01:01,A*02:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/09/PXD038273/Mesothelioma_Ligandome_2022may_Meso2_002pellet1_22-05-30_5922.d.zip MESO PXD038273 batch2 Mesothelioma_Ligandome_2022may_Meso3_002pellet3_22-05-30_5924.d Meso_002 A*01:01,A*02:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/09/PXD038273/Mesothelioma_Ligandome_2022may_Meso3_002pellet3_22-05-30_5924.d.zip MESO PXD038273 batch2 Mesothelioma_Ligandome_2022may_Meso4_002benign_22-05-30_5926.d Meso_002_benign A*01:01,A*02:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/09/PXD038273/Mesothelioma_Ligandome_2022may_Meso4_002benign_22-05-30_5926.d.zip LIHC PXD023143 2047_L_MdB_6jan2020_MdB027_HCC.raw donor16_chronic A*24:02,B*18:01,B*38:02,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2047_L_MdB_6jan2020_MdB027_HCC.raw LIHC PXD023143 2047_L_MdB_6jan2020_MdB027_HCC_20200107142218.raw donor16_chronic A*24:02,B*18:01,B*38:02,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2047_L_MdB_6jan2020_MdB027_HCC_20200107142218.raw LIHC PXD023143 2060_L_MdB069_1mei19_donor_MdB029_HCC_2_OT.raw donor17_chronic A*01:01,A*02:01,B*18:01,B*14:01,C*07:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2060_L_MdB069_1mei19_donor_MdB029_HCC_2_OT.raw LIHC PXD023143 2060_L_MdB069_1mei19_donor_MdB029_HCC_OT.raw donor17_chronic A*01:01,A*02:01,B*18:01,B*14:01,C*07:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2060_L_MdB069_1mei19_donor_MdB029_HCC_OT.raw LIHC PXD023143 2064_L_MdB071_7mei19_donor_MdB032_HCC_OT.raw donor18_resolved A*02:01,B*44:02,B*57:01,C*04:01,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2064_L_MdB071_7mei19_donor_MdB032_HCC_OT.raw LIHC PXD023143 2064_L_MdB071_7mei19_donor_MdB032_HCC_OT_2.raw donor18_resolved A*02:01,B*44:02,B*57:01,C*04:01,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2064_L_MdB071_7mei19_donor_MdB032_HCC_OT_2.raw LIHC PXD023143 2069_L_MdB076_17mei19_donor_MdB033_HCC_OT.raw donor19_chronic A*33:01,A*68:02,B*52:01,B*78:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2069_L_MdB076_17mei19_donor_MdB033_HCC_OT.raw LIHC PXD023143 2069_L_MdB076_17mei19_donor_MdB033_HCC_OT_20190520124355.raw donor19_chronic A*33:01,A*68:02,B*52:01,B*78:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2069_L_MdB076_17mei19_donor_MdB033_HCC_OT_20190520124355.raw LIHC PXD023143 2047_L_MdB_6jan2020_MdB037_HCC.raw donor20_chronic A*02:01,A*32:01,B*37:01,B*44:02,C*05:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2047_L_MdB_6jan2020_MdB037_HCC.raw LIHC PXD023143 2047_L_MdB_6jan2020_MdB037_HCC_20200108041530.raw donor20_chronic A*02:01,A*32:01,B*37:01,B*44:02,C*05:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2047_L_MdB_6jan2020_MdB037_HCC_20200108041530.raw LIHC PXD023143 2062_L_MdB070_3mei19_donor_MdB057_HCC_2_OT.raw donor21_nd A*02:01,A*11:01,B*14:01,B*51:01,C*08:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2062_L_MdB070_3mei19_donor_MdB057_HCC_2_OT.raw LIHC PXD023143 2062_L_MdB070_3mei19_donor_MdB057_HCC_OT.raw donor21_nd A*02:01,A*11:01,B*14:01,B*51:01,C*08:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2062_L_MdB070_3mei19_donor_MdB057_HCC_OT.raw LIHC PXD023143 2064_L_MdB071_7mei19_donor_MdB066_HCC_OT.raw donor22_acute A*01:01,B*08:01,B*35:02,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2064_L_MdB071_7mei19_donor_MdB066_HCC_OT.raw LIHC PXD023143 2064_L_MdB071_7mei19_donor_MdB066_HCC_OT_2.raw donor22_acute A*01:01,B*08:01,B*35:02,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD023143/2064_L_MdB071_7mei19_donor_MdB066_HCC_OT_2.raw LIHC PXD037270 batch1 Liv1_09945T1_3_.raw liv1 A*02:01,A*24:02,B*38:01,B*39:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv1_09945T1_3_.raw LIHC PXD037270 batch1 Liv2_0000032532.raw liv2 A*03:01,B*15:16,B*53:01,C*04:01,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv2_0000032532.raw LIHC PXD037270 batch1 Liv3_0000040312.raw liv3 A*11:01,A*24:02,B*27:06,B*38:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv3_0000040312.raw LIHC PXD037270 batch1 Liv4_0000031295.raw liv4 A*24:02,B*13:01,B*40:01,C*04:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv4_0000031295.raw LIHC PXD037270 batch1 Liv5_0000049186.raw liv5 A*02:01,A*03:01,B*07:02,B*38:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv5_0000049186.raw LIHC PXD037270 batch1 Liv6_0000049219.raw liv6 A*11:01,A*30:01,B13:02,B*40:01,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv6_0000049219.raw LIHC PXD037270 batch1 Liv7_ILS37316FT2.raw liv7 A*02:03,A*02:06,B*15:25,B*55:02,C*07:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv7_ILS37316FT2.raw LIHC PXD037270 batch1 Liv8_ILS30987D2.raw liv8 A*11:01,B*15:02,B*35:01,C*03:03,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv8_ILS30987D2.raw LIHC PXD037270 batch1 Liv9_ILS24999D2.raw liv9 A*02:03,A*33:03,B*38:02,B*48:03,C*07:02,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv9_ILS24999D2.raw LIHC PXD037270 batch1 Liv10_ILS39940FT1.raw liv10 A*11:01,A*30:01,B*07:02,B*38:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv10_ILS39940FT1.raw LIHC PXD037270 batch1 Liv11_ILS31761D1.raw liv11 A*02:03,A*11:01,B*15:02,B*46:01,C*01:02,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv11_ILS31761D1.raw LIHC PXD037270 batch1 Liv12_ILS22791D2.raw liv12 A*02:01,A*11:01,B*39:01,B*51:01,C*07:02,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv12_ILS22791D2.raw LIHC PXD037270 batch1 Liv13_ILS23304D2.raw liv13 A*11:01,A*24:02,B*35:05,B*46:01,C*01:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv13_ILS23304D2.raw LIHC PXD037270 batch1 Liv14_ILS20947D3.raw liv14 A*11:01,B*15:02,B*38:02,C*07:02,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv14_ILS20947D3.raw LIHC PXD037270 batch1 Liv15_ILS21034D4.raw liv15 A*11:01,A*33:03,B*15:02,B*58:01,C*03:02,C14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv15_ILS21034D4.raw LIHC PXD037270 batch1 Liv16_ILS42208FT1.raw liv16 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv16_ILS42208FT1.raw LIHC PXD037270 batch1 Liv17_ILS22914D2.raw liv17 A*11:01,A*31:01,B*13:01,B*51:02,C*03:04,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv17_ILS22914D2.raw LIHC PXD037270 batch1 Liv18_ILS20954D2.raw liv18 A*02:01,A*74:02,B*15:02,B*51:01,C*08:01,C*14;02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv18_ILS20954D2.raw LIHC PXD037270 batch1 Liv19_ILS21955D2.raw liv19 A*02:03,A*31:01,B*15:25,B*51:01,C*04:03,C*16:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv19_ILS21955D2.raw LIHC PXD037270 batch1 Liv20_ILS10922D04.raw liv20 A*02:264,A*33:03,B*18:02,B*58:01,C*03:02,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv20_ILS10922D04.raw LIHC PXD037270 batch2 Liv21_499956PF.raw liv21 A*02:01,A*11:01,B*13:01,B*55:02,C*01:02,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv21_499956PF.raw LIHC PXD037270 batch2 Liv22_524614VF.raw liv22 A*11:01,B*18:02,B*38:02,C*04:03,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv22_524614VF.raw LIHC PXD037270 batch2 Liv23_ILS35989FT2.raw liv23 A*02:07,A*11:01,B*38:02,B*46:01,C*01:12,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv23_ILS35989FT2.raw LIHC PXD037270 batch2 Liv24_ILS42195FT1.raw liv24 A*11:01,A*29:01,B*07:05,B*35:01,C*03,03,C*15:05 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv24_ILS42195FT1.raw LIHC PXD037270 batch2 Liv25_ILS45824FT1.raw liv25 A*24:02,B*40:01,B*54:01,C*01:02,C*04:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv25_ILS45824FT1.raw LIHC PXD037270 batch2 Liv26_ILS36725FT2.raw liv26 A*01:01,A*33:03,B*13:01,B*57:01,C*03:04,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv26_ILS36725FT2.raw LIHC PXD037270 batch2 Liv27_ILS37352FT1.raw liv27 A*11:01,B*38:02,B*51:01,C*07:02,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv27_ILS37352FT1.raw LIHC PXD037270 batch2 Liv28_ILS50526FA1.raw liv28 A*11:01,A*33:03,B*15:25,B*35:05,C*04:01,C*04:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv28_ILS50526FA1.raw LIHC PXD037270 batch2 Liv29_ILS50526FT2.raw liv29 A*11:01,A*33:03,B*15:25,B*35:05,C*04:01,C*04:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv29_ILS50526FT2.raw LIHC PXD037270 batch2 Liv30_ILS50523FA1.raw liv30 A*11:01,A*33:03,B*15:02,B*58:01,C*03:02,C*08;01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv30_ILS50523FA1.raw LIHC PXD037270 batch2 Liv31_ILS50523FT2.raw liv31 A*11:01,A*33:03,B*15:02,B*58:01,C*03:02,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv31_ILS50523FT2.raw LIHC PXD037270 batch2 Liv32_1176935F.raw liv32 A*02:06,A*11:01,B*15:02,C*07:02,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv32_1176935F.raw LIHC PXD037270 batch2 Liv33_1176559F.raw liv33 A*24:02,A*26:01,B*38:02,B*54:01,C*01:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv33_1176559F.raw LIHC PXD037270 batch2 Liv34_1182970F.raw liv34 A*11:01,A*29:01,B*15:02,C*04:03,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv34_1182970F.raw LIHC PXD037270 batch2 Liv35_1181680F.raw liv35 A*11:01,A*33:03,B*44:03,B*56:04,C*07:06,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv35_1181680F.raw LIHC PXD037270 batch2 Liv36_1182812F.raw liv36 A*11:01,A*26:01,B*44:03,B*56:04,C*07:06,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv36_1182812F.raw LIHC PXD037270 batch2 Liv37_1189452F.raw liv37 A*11:01,A*24:02,B*15:12,B*15:25,C*03:03,C*04:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv37_1189452F.raw LIHC PXD037270 batch2 Liv38_1193117F.raw liv38 A*11:01,A*24:03,B*15:02,C*04:03,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv38_1193117F.raw LIHC PXD037270 batch2 Liv39_1192879F.raw liv39 A*11:01,B*15:02,B*46:01,C*01:02,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv39_1192879F.raw LIHC PXD037270 batch2 Liv40_405295F2.raw liv40 A*02:07,A*02:65,B*38:02,B*46:01,C*01:12,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv40_405295F2.raw LIHC PXD037270 batch3 Liv41_ILS32961D2.raw liv41 A*01:01,A*02:07,B*46:01,B*57:01,C*01:02,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv41_ILS32961D2.raw LIHC PXD037270 batch3 Liv42_ILS33989D2.raw liv42 A*02:01,A*24:02,B*15:02,B*15:12,C*03:03,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv42_ILS33989D2.raw LIHC PXD037270 batch3 Liv43_ILS22892S1.raw liv43 A*02:07,A*33:03,B*46:01,B*58:01,C*01:02,C*03:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv43_ILS22892S1.raw LIHC PXD037270 batch3 Liv44_ILS24966D3-DS2.raw liv44 A*02:03,A*33:03,B*13:01,B*58:01,C*03:02,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv44_ILS24966D3-DS2.raw LIHC PXD037270 batch3 Liv45_ILS30194D2.raw liv45 A*02:03,A*24:02,B*15:12,B*40:01,C*03:03,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv45_ILS30194D2.raw LIHC PXD037270 batch3 Liv46_ILS32365D1.raw liv46 A*02:07,A*24:03,B*15:01,B*15:12,C*01:03,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv46_ILS32365D1.raw LIHC PXD037270 batch3 Liv47_ILS32963D1.raw liv47 A*11:01,A*31:01,B*51:01,B*51:02,C*14:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv47_ILS32963D1.raw LIHC PXD037270 batch3 Liv48_ILS36088FT2.raw liv48 A*02:03,A*11:01,B*15:21,B*56:04,C*01:02,C*04:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD037270/Liv48_ILS36088FT2.raw LIHC phase2_PXD013057 131025_NT_HCC23_Tumor_LysatReRun_W_20%_#1_50cm195min5s_msms10.raw HCC023 A*24:02,A*29:02,B*37:01,B*44:03,C*06:02,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/131025_NT_HCC23_Tumor_LysatReRun_W_20%_#1_50cm195min5s_msms10.RAW LIHC phase2_PXD013057 131025_NT_HCC23_Tumor_W_20%_#1_50cm195min5s_msms1.raw HCC023 A*24:02,A*29:02,B*37:01,B*44:03,C*06:02,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/131025_NT_HCC23_Tumor_W_20%_#1_50cm195min5s_msms1.RAW LIHC phase2_PXD013057 131025_NT_HCC24_Tumor_W_20%_#1_50cm195min5s_msms6.raw HCC024 A*03:01,A*68:01,B*15:01,B*40:01,C*03:04,C*03:81 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/131025_NT_HCC24_Tumor_W_20%_#1_50cm195min5s_msms6.RAW LIHC phase2_PXD013057 140124_NT_HCC25_Tumor_W_20%_Rep#1_25cm90min3s_msms1.raw HCC025 A*02:01,A*11:01,B*37:01,B*44:02,C*06:02,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/140124_NT_HCC25_Tumor_W_20%_Rep#1_25cm90min3s_msms1.RAW LIHC phase2_PXD013057 140122_NT_HCC26_Tumor_W_20%_Rep#1_25cm90min3s_msms5.raw HCC026 A*01:01,A*02:01,B*08:01,B*51:01,C*01:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/140122_NT_HCC26_Tumor_W_20%_Rep#1_25cm90min3s_msms5.RAW LIHC phase2_PXD013057 140221_nt_HCC27_Tumor_W_20%_Rep#1_50cm195min5s_msms1.raw HCC027 A*03:01,A*24:02,B*18:01,B*27:05,C*02:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/140221_nt_HCC27_Tumor_W_20%_Rep#1_50cm195min5s_msms1.RAW LIHC phase2_PXD013057 140221_nt_HCC28_Tumor_W_20%_Rep#1_50cm195min5s_msms5.raw HCC028 A*02:01,A*24:02,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/140221_nt_HCC28_Tumor_W_20%_Rep#1_50cm195min5s_msms5.RAW LIHC phase2_PXD013057 161002_RZ_HCC030_Tumor_W_Adjusted_#2_25cm90min3s_msms7.raw HCC030 A*02:01,A*03:01,B*14:01,B*27:05,C*01:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/161002_RZ_HCC030_Tumor_W_Adjusted_#2_25cm90min3s_msms7.raw LIHC phase2_PXD013057 161002_RZ_HCC030_Tumor_W_Adjusted_#3_25cm90min3s_msms8.raw HCC030 A*02:01,A*03:01,B*14:01,B*27:05,C*01:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/161002_RZ_HCC030_Tumor_W_Adjusted_#3_25cm90min3s_msms8.raw LIHC phase2_PXD013057 161002_RZ_HCC030_Tumor_W_Adjusted_#4_25cm90min3s_msms9.raw HCC030 A*02:01,A*03:01,B*14:01,B*27:05,C*01:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/161002_RZ_HCC030_Tumor_W_Adjusted_#4_25cm90min3s_msms9.raw LIHC phase2_PXD013057 161002_RZ_HCC030_Tumor_W_Adjusted_#5_25cm90min3s_msms10.raw HCC030 A*02:01,A*03:01,B*14:01,B*27:05,C*01:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/161002_RZ_HCC030_Tumor_W_Adjusted_#5_25cm90min3s_msms10.raw LIHC phase2_PXD013057 160830_RZ_HCC0034_Tumor_W_Adjusted_#2_25cm90min3s_msms16.raw HCC034 A*11:01,A*23:01,B*18:01,B*44:03,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160830_RZ_HCC0034_Tumor_W_Adjusted_#2_25cm90min3s_msms16.raw LIHC phase2_PXD013057 160830_RZ_HCC0034_Tumor_W_Adjusted_#3_25cm90min3s_msms17.raw HCC034 A*11:01,A*23:01,B*18:01,B*44:03,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160830_RZ_HCC0034_Tumor_W_Adjusted_#3_25cm90min3s_msms17.raw LIHC phase2_PXD013057 160830_RZ_HCC0034_Tumor_W_Adjusted_#4_25cm90min3s_msms18.raw HCC034 A*11:01,A*23:01,B*18:01,B*44:03,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160830_RZ_HCC0034_Tumor_W_Adjusted_#4_25cm90min3s_msms18.raw LIHC phase2_PXD013057 160830_RZ_HCC0034_Tumor_W_Adjusted_#5_25cm90min3s_msms19.raw HCC034 A*11:01,A*23:01,B*18:01,B*44:03,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160830_RZ_HCC0034_Tumor_W_Adjusted_#5_25cm90min3s_msms19.raw LIHC phase2_PXD013057 160830_RZ_HCC0034_Tumor_W_DoseFinding_25cm90min3s_msms2.raw HCC034 A*11:01,A*23:01,B*18:01,B*44:03,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160830_RZ_HCC0034_Tumor_W_DoseFinding_25cm90min3s_msms2.raw LIHC phase2_PXD013057 160918_RZ_HCC035_Tumor_W_Adjusted_#1_25cm90min3s_msms6.raw HCC035 A*02:01,A*68:01,B*27:05,B*35:03,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160918_RZ_HCC035_Tumor_W_Adjusted_#1_25cm90min3s_msms6.raw LIHC phase2_PXD013057 160918_RZ_HCC035_Tumor_W_Adjusted_#2_25cm90min3s_msms7.raw HCC035 A*02:01,A*68:01,B*27:05,B*35:03,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160918_RZ_HCC035_Tumor_W_Adjusted_#2_25cm90min3s_msms7.raw LIHC phase2_PXD013057 160918_RZ_HCC035_Tumor_W_Adjusted_#3_25cm90min3s_msms8.raw HCC035 A*02:01,A*68:01,B*27:05,B*35:03,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160918_RZ_HCC035_Tumor_W_Adjusted_#3_25cm90min3s_msms8.raw LIHC phase2_PXD013057 160918_RZ_HCC035_Tumor_W_Adjusted_#4_25cm90min3s_msms9.raw HCC035 A*02:01,A*68:01,B*27:05,B*35:03,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160918_RZ_HCC035_Tumor_W_Adjusted_#4_25cm90min3s_msms9.raw LIHC phase2_PXD013057 160918_RZ_HCC035_Tumor_W_Adjusted_#5_25cm90min3s_msms10.raw HCC035 A*02:01,A*68:01,B*27:05,B*35:03,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160918_RZ_HCC035_Tumor_W_Adjusted_#5_25cm90min3s_msms10.raw LIHC phase2_PXD013057 160923_RZ_HCC036_Tumor_W_Adjusted_#2_25cm90min3s_msms6.raw HCC036 A*02:01,A*68:01,B*27:05,B*44:02,C*01:02,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160923_RZ_HCC036_Tumor_W_Adjusted_#2_25cm90min3s_msms6.raw LIHC phase2_PXD013057 160923_RZ_HCC036_Tumor_W_Adjusted_#3_25cm90min3s_msms7.raw HCC036 A*02:01,A*68:01,B*27:05,B*44:02,C*01:02,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160923_RZ_HCC036_Tumor_W_Adjusted_#3_25cm90min3s_msms7.raw LIHC phase2_PXD013057 160923_RZ_HCC036_Tumor_W_Adjusted_#4_25cm90min3s_msms8.raw HCC036 A*02:01,A*68:01,B*27:05,B*44:02,C*01:02,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160923_RZ_HCC036_Tumor_W_Adjusted_#4_25cm90min3s_msms8.raw LIHC phase2_PXD013057 160923_RZ_HCC036_Tumor_W_Adjusted_#5_25cm90min3s_msms9.raw HCC036 A*02:01,A*68:01,B*27:05,B*44:02,C*01:02,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160923_RZ_HCC036_Tumor_W_Adjusted_#5_25cm90min3s_msms9.raw LIHC phase2_PXD013057 180130_LM_HCC38_Tumor_W6-32_8%_Dosefinding_25cm90min3s_msms38.raw HCC038 A*02:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/180130_LM_HCC38_Tumor_W6-32_8%_Dosefinding_25cm90min3s_msms38.raw LIHC phase2_PXD013057 180130_LM_HCC38_Tumor_W6-32_8%_Rep#2_25cm90min3s_msms49.raw HCC038 A*02:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/180130_LM_HCC38_Tumor_W6-32_8%_Rep#2_25cm90min3s_msms49.raw LIHC phase2_PXD013057 180130_LM_HCC38_Tumor_W6-32_8%_Rep#3_25cm90min3s_msms50.raw HCC038 A*02:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/180130_LM_HCC38_Tumor_W6-32_8%_Rep#3_25cm90min3s_msms50.raw LIHC phase2_PXD013057 180130_LM_HCC38_Tumor_W6-32_8%_Rep#4_25cm90min3s_msms51.raw HCC038 A*02:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/180130_LM_HCC38_Tumor_W6-32_8%_Rep#4_25cm90min3s_msms51.raw LIHC phase2_PXD013057 180130_LM_HCC38_Tumor_W6-32_8%_Rep#5_25cm90min3s_msms52.raw HCC038 A*02:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/180130_LM_HCC38_Tumor_W6-32_8%_Rep#5_25cm90min3s_msms52.raw LIHC phase2_PXD013057 160912_RZ_HCC040_Tumor_W_Adjusted_#1_25cm90min3s_msms6.raw HCC040 A*03:01,A*68:01,B*44:02,B*51:01,C*07:04,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160912_RZ_HCC040_Tumor_W_Adjusted_#1_25cm90min3s_msms6.raw LIHC phase2_PXD013057 160912_RZ_HCC040_Tumor_W_Adjusted_#2_25cm90min3s_msms7.raw HCC040 A*03:01,A*68:01,B*44:02,B*51:01,C*07:04,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160912_RZ_HCC040_Tumor_W_Adjusted_#2_25cm90min3s_msms7.raw LIHC phase2_PXD013057 160912_RZ_HCC040_Tumor_W_Adjusted_#3_25cm90min3s_msms8.raw HCC040 A*03:01,A*68:01,B*44:02,B*51:01,C*07:04,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160912_RZ_HCC040_Tumor_W_Adjusted_#3_25cm90min3s_msms8.raw LIHC phase2_PXD013057 160912_RZ_HCC040_Tumor_W_Adjusted_#4_25cm90min3s_msms9.raw HCC040 A*03:01,A*68:01,B*44:02,B*51:01,C*07:04,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160912_RZ_HCC040_Tumor_W_Adjusted_#4_25cm90min3s_msms9.raw LIHC phase2_PXD013057 160912_RZ_HCC040_Tumor_W_Adjusted_#5_25cm90min3s_msms10.raw HCC040 A*03:01,A*68:01,B*44:02,B*51:01,C*07:04,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160912_RZ_HCC040_Tumor_W_Adjusted_#5_25cm90min3s_msms10.raw LIHC phase2_PXD013057 161002_RZ_HCC041_Tumor_W_Adjusted_#1_25cm90min3s_msms28.raw HCC041 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/161002_RZ_HCC041_Tumor_W_Adjusted_#1_25cm90min3s_msms28.raw LIHC phase2_PXD013057 161002_RZ_HCC041_Tumor_W_Adjusted_#2_25cm90min3s_msms29.raw HCC041 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/161002_RZ_HCC041_Tumor_W_Adjusted_#2_25cm90min3s_msms29.raw LIHC phase2_PXD013057 161002_RZ_HCC041_Tumor_W_Adjusted_#3_25cm90min3s_msms30.raw HCC041 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/161002_RZ_HCC041_Tumor_W_Adjusted_#3_25cm90min3s_msms30.raw LIHC phase2_PXD013057 161002_RZ_HCC041_Tumor_W_Adjusted_#4_25cm90min3s_msms31.raw HCC041 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/161002_RZ_HCC041_Tumor_W_Adjusted_#4_25cm90min3s_msms31.raw LIHC phase2_PXD013057 161002_RZ_HCC041_Tumor_W_Adjusted_#5_25cm90min3s_msms32.raw HCC041 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/161002_RZ_HCC041_Tumor_W_Adjusted_#5_25cm90min3s_msms32.raw LIHC phase2_PXD013057 160912_RZ_HCC042_Tumor_W_Adjusted_#2_25cm90min3s_msms38.raw HCC042 A*01:01,A*03:01,B*08:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160912_RZ_HCC042_Tumor_W_Adjusted_#2_25cm90min3s_msms38.raw LIHC phase2_PXD013057 160912_RZ_HCC042_Tumor_W_Adjusted_#3_25cm90min3s_msms39.raw HCC042 A*01:01,A*03:01,B*08:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160912_RZ_HCC042_Tumor_W_Adjusted_#3_25cm90min3s_msms39.raw LIHC phase2_PXD013057 160912_RZ_HCC042_Tumor_W_Adjusted_#4_25cm90min3s_msms40.raw HCC042 A*01:01,A*03:01,B*08:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013057/160912_RZ_HCC042_Tumor_W_Adjusted_#4_25cm90min3s_msms40.raw LIHC phase2_PXD013057 160912_RZ_HCC042_Tumor_W_Adjusted_#5_25cm90min3s_msms41.raw 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https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210531_JB_SMMC_3_p1011_24h_W6-32_20_DDA2_235-1151mz_msms28.raw LIHC phase2_PXD029882 210531_JB_SMMC_3_p1011_24h_W6-32_20_DDA3_235-1151mz_msms29.raw SMMC_DNAJB1-PRKACA A*68:02,B*15:03,C*12:03 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210531_JB_SMMC_3_p1011_24h_W6-32_20_DDA3_235-1151mz_msms29.raw LIHC phase2_PXD029882 210531_JB_SMMC_3_p1431_24h_W6-32_20_DDA1_235-1151mz_msms34.raw SMMC_DNAJB1-PRKACA A*68:02,B*15:03,C*12:03 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210531_JB_SMMC_3_p1431_24h_W6-32_20_DDA1_235-1151mz_msms34.raw LIHC phase2_PXD029882 210531_JB_SMMC_3_p1431_24h_W6-32_20_DDA2_235-1151mz_msms35.raw SMMC_DNAJB1-PRKACA A*68:02,B*15:03,C*12:03 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210531_JB_SMMC_3_p1431_24h_W6-32_20_DDA2_235-1151mz_msms35.raw LIHC phase2_PXD029882 210531_JB_SMMC_3_p1431_24h_W6-32_20_DDA3_235-1151mz_msms36.raw SMMC_DNAJB1-PRKACA A*68:02,B*15:03,C*12:03 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210531_JB_SMMC_3_p1431_24h_W6-32_20_DDA3_235-1151mz_msms36.raw LIHC phase2_PXD029882 210614_JB_HepG2_1_p1011_W6-32_33_DDA1_235-1151mz_msms12.raw HepG2_DNAJB1-PRKACA A*02:01,A*24:02,B*35:14,B*51:01,C*04:01,C*16:02 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_1_p1011_W6-32_33_DDA1_235-1151mz_msms12.raw LIHC phase2_PXD029882 210614_JB_HepG2_1_p1011_W6-32_33_DDA1_235-1151mz_msms13.raw HepG2_DNAJB1-PRKACA A*02:01,A*24:02,B*35:14,B*51:01,C*04:01,C*16:02 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_1_p1011_W6-32_33_DDA1_235-1151mz_msms13.raw LIHC phase2_PXD029882 210614_JB_HepG2_1_p1011_W6-32_33_DDA1_235-1151mz_msms14.raw HepG2_DNAJB1-PRKACA A*02:01,A*24:02,B*35:14,B*51:01,C*04:01,C*16:02 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_1_p1011_W6-32_33_DDA1_235-1151mz_msms14.raw LIHC phase2_PXD029882 210614_JB_HepG2_1_p1431_W6-32_33_DDA1_235-1151mz_msms5.raw HepG2_DNAJB1-PRKACA A*02:01,A*24:02,B*35:14,B*51:01,C*04:01,C*16:02 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_1_p1431_W6-32_33_DDA1_235-1151mz_msms5.raw LIHC phase2_PXD029882 210614_JB_HepG2_1_p1431_W6-32_33_DDA2_235-1151mz_msms6.raw HepG2_DNAJB1-PRKACA A*02:01,A*24:02,B*35:14,B*51:01,C*04:01,C*16:02 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_1_p1431_W6-32_33_DDA2_235-1151mz_msms6.raw LIHC phase2_PXD029882 210614_JB_HepG2_1_p1431_W6-32_33_DDA3_235-1151mz_msms7.raw HepG2_DNAJB1-PRKACA A*02:01,A*24:02,B*35:14,B*51:01,C*04:01,C*16:02 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_1_p1431_W6-32_33_DDA3_235-1151mz_msms7.raw LIHC phase2_PXD029882 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https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_2_p1431_W6-32_33_DDA1_235-1151mz_msms19.raw LIHC phase2_PXD029882 210614_JB_HepG2_2_p1431_W6-32_33_DDA2_235-1151mz_msms20.raw HepG2_DNAJB1-PRKACA A*02:01,A*24:02,B*35:14,B*51:01,C*04:01,C*16:02 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_2_p1431_W6-32_33_DDA2_235-1151mz_msms20.raw LIHC phase2_PXD029882 210614_JB_HepG2_2_p1431_W6-32_33_DDA3_235-1151mz_msms21.raw HepG2_DNAJB1-PRKACA A*02:01,A*24:02,B*35:14,B*51:01,C*04:01,C*16:02 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_2_p1431_W6-32_33_DDA3_235-1151mz_msms21.raw LIHC phase2_PXD029882 210614_JB_HepG2_3_p1011_W6-32_33_DDA1_235-1151mz_msms40.raw HepG2_DNAJB1-PRKACA A*02:01,A*24:02,B*35:14,B*51:01,C*04:01,C*16:02 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_3_p1011_W6-32_33_DDA1_235-1151mz_msms40.raw LIHC phase2_PXD029882 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https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_3_p1431_W6-32_33_DDA2_235-1151mz_msms34.raw LIHC phase2_PXD029882 210614_JB_HepG2_3_p1431_W6-32_33_DDA3_235-1151mz_msms35.raw HepG2_DNAJB1-PRKACA A*02:01,A*24:02,B*35:14,B*51:01,C*04:01,C*16:02 DDA https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029882/210614_JB_HepG2_3_p1431_W6-32_33_DDA3_235-1151mz_msms35.raw ESCA PXD031108 batch1 ben_220818_tu_181t_even_a_mhc1.raw p181 A*03:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD031108/ben_220818_tu_181t_even_a_mhc1.raw ESCA PXD031108 batch1 ben_220818_tu_181t_even_b_mhc1.raw p181 A*03:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD031108/ben_220818_tu_181t_even_b_mhc1.raw ESCA PXD031108 batch1 ben_220818_tu_181t_odd_a_mhc1.raw p181 A*03:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA 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11H008_221118_2.raw 11H008_FLT3-ITD_FLT3-TKD A*29:02,A*03:01,B*44:03,B*57:01,C*06:02,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/11H008_221118_2.raw AML PXD018542_perreault_atypical batch1 11H035_201118_1.raw 11H035_NPM1fs_FLT3-ITD A*03:01,A*24:02,B*07:02,B*07:02,C*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/11H035_201118_1.raw AML PXD018542_perreault_atypical batch1 11H035_201118_2.raw 11H035_NPM1fs_FLT3-ITD A*03:01,A*24:02,B*07:02,B*07:02,C*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/11H035_201118_2.raw AML PXD018542_perreault_atypical batch1 12H172_191118_1.raw 12H172_TP53mut A*24:02,A*02:01,B*15:01,B*15:01,C*03:03,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/12H172_191118_1.raw AML PXD018542_perreault_atypical batch1 12H172_191118_2.raw 12H172_TP53mut A*24:02,A*02:01,B*15:01,B*15:01,C*03:03,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/12H172_191118_2.raw AML PXD018542_perreault_atypical batch1 14H124_260619_1.raw 14H124_TET2mut A*02:01,A*26:01,B*44:05,B*27:05,C*02:02,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/14H124_260619_1.raw AML PXD018542_perreault_atypical batch2 14H124_260619_2.raw 14H124_TET2mut A*02:01,A*26:01,B*44:05,B*27:05,C*02:02,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/14H124_260619_2.raw AML PXD018542_perreault_atypical batch2 15H013_161118_1.raw 15H013_FLT3-ITD_DNMT3Amut_IDH2R140_RUNX1mut A*30:02,A*02:01,B*39:05,B*57:03,C*18:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/15H013_161118_1.raw AML PXD018542_perreault_atypical batch2 15H013_161118_2.raw 15H013_FLT3-ITD_DNMT3Amut_IDH2R140_RUNX1mut A*30:02,A*02:01,B*39:05,B*57:03,C*18:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/15H013_161118_2.raw AML PXD018542_perreault_atypical batch2 16H123_201118_1.raw 16H123_NPM1fs A*24:02,A*03:01,B*15:01,B*07:02,C*07:02,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/16H123_201118_1.raw AML PXD018542_perreault_atypical batch2 16H123_201118_2.raw 16H123_NPM1fs A*24:02,A*03:01,B*15:01,B*07:02,C*07:02,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/16H123_201118_2.raw AML PXD018542_perreault_atypical batch2 16H145_141118_1.raw 16H145_NPM1fs_FLT3-ITD_DNMT3Amut A*02:01,A*02:01,B*27:02,B*55:01,C*03:03,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/16H145_141118_1.raw AML PXD018542_perreault_atypical batch2 16H145_141118_2.raw 16H145_NPM1fs_FLT3-ITD_DNMT3Amut A*02:01,A*02:01,B*27:02,B*55:01,C*03:03,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD018542/16H145_141118_2.raw AML PXD018542_perreault_atypical batch2 AML_050418_1.raw 10H005_TET2mut A*11:01,A*11:01,B*13:01,B*13:01,C*07:02,C*03:04 DDA 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ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/e005649.raw AML PXD012083_plos_one_npm1_neoantigen batch1 e005650.raw AML008 A*01:01,A*26:01,B*14:02,B*55:01,C*03:01,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/e005650.raw AML PXD012083_plos_one_npm1_neoantigen batch1 e005651.raw AML008 A*01:01,A*26:01,B*14:02,B*55:01,C*03:01,C*08:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/e005651.raw AML PXD012083_plos_one_npm1_neoantigen batch1 e005655.raw AML009 A*01:01,A*02:01,B*27:05,B*57:01,C*01:02,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/e005655.raw AML PXD012083_plos_one_npm1_neoantigen batch1 e005656.raw AML009 A*01:01,A*02:01,B*27:05,B*57:01,C*01:02,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/e005656.raw AML PXD012083_plos_one_npm1_neoantigen batch2 e005657.raw AML009 A*01:01,A*02:01,B*27:05,B*57:01,C*01:02,C*06:02 DDA 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ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/e005687.raw AML PXD012083_plos_one_npm1_neoantigen batch2 e005691.raw AML016 A*01:01,A*24:02,B*55:01,B*57:01,C*03:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/e005691.raw AML PXD012083_plos_one_npm1_neoantigen batch2 e005692.raw AML016 A*01:01,A*24:02,B*55:01,B*57:01,C*03:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/e005692.raw AML PXD012083_plos_one_npm1_neoantigen batch2 e005693.raw AML016 A*01:01,A*24:02,B*55:01,B*57:01,C*03:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/e005693.raw AML PXD012083_plos_one_npm1_neoantigen batch2 FL0012549.raw OCI_NPM1fs A*02:01,A*23:01,B*44:02,B*53:01,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/FL0012549.raw AML PXD012083_plos_one_npm1_neoantigen batch3 FL0012553.raw OCI_NPM1fs A*02:01,A*23:01,B*44:02,B*53:01,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/FL0012553.raw AML PXD012083_plos_one_npm1_neoantigen batch3 FL0012563.raw MV4_FLT-ITD A*03:01,A*68:01,B*14:02,B*18:01,C*08:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/FL0012563.raw AML PXD012083_plos_one_npm1_neoantigen batch3 FL0012567.raw MV4_FLT-ITD A*03:01,A*68:01,B*14:02,B*18:01,C*08:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD012083/FL0012567.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_BB72_Filter.raw THP1_A2_filter A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_BB72_Filter.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_BB72_P1.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_BB72_P1.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_BB72_P10new.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_BB72_P10new.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_BB72_P2.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_BB72_P2.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_BB72_P3.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_BB72_P3.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_BB72_P4.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_BB72_P4.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_BB72_P5.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_BB72_P5.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_BB72_P6.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_BB72_P6.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_BB72_P7.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_BB72_P7.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_BB72_P8.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_BB72_P8.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_BB72_P9new.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_BB72_P9new.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_w632_Filter.raw THP1_pan_filter A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_w632_Filter.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_w632_P1.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_w632_P1.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_w632_P10.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_w632_P10.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_w632_P2.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_w632_P2.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_w632_P3.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_w632_P3.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_w632_P4.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_w632_P4.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_w632_P5.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_w632_P5.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_w632_P6.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_w632_P6.raw AML PXD015039_THP1_protocol_optimization batch1 F120180713_KP_THP1_w632_P7.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_w632_P7.raw AML PXD015039_THP1_protocol_optimization batch2 F120180713_KP_THP1_w632_P8.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_w632_P8.raw AML PXD015039_THP1_protocol_optimization batch2 F120180713_KP_THP1_w632_P9.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180713_KP_THP1_w632_P9.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_BB72_Filter.raw THP1_A2_filter A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_BB72_Filter.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_BB72_P1.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_BB72_P1.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_BB72_P10.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_BB72_P10.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_BB72_P2.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_BB72_P2.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_BB72_P3.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_BB72_P3.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_BB72_P4.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_BB72_P4.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_BB72_P5.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_BB72_P5.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_BB72_P6.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_BB72_P6.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_BB72_P7.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_BB72_P7.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_BB72_P8.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_BB72_P8.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_BB72_P9.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_BB72_P9.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_W632_Filter.raw THP1_pan_filter A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_W632_Filter.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_W632_P1.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_W632_P1.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_W632_P10.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_W632_P10.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_W632_P2.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_W632_P2.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_W632_P3.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_W632_P3.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_W632_P4.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_W632_P4.raw AML PXD015039_THP1_protocol_optimization batch2 F120180817_KP_THP1_W632_P5.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_W632_P5.raw AML PXD015039_THP1_protocol_optimization batch3 F120180817_KP_THP1_W632_P6.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_W632_P6.raw AML PXD015039_THP1_protocol_optimization batch3 F120180817_KP_THP1_W632_P7.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_W632_P7.raw AML PXD015039_THP1_protocol_optimization batch3 F120180817_KP_THP1_W632_P8.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_W632_P8.raw AML PXD015039_THP1_protocol_optimization batch3 F120180817_KP_THP1_W632_P9.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F120180817_KP_THP1_W632_P9.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_Filter_TR1.raw THP1_A2_filter A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_Filter_TR1.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_Filter_TR2.raw THP1_A2_filter A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_Filter_TR2.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_Filter_TR3.raw THP1_A2_filter A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_Filter_TR3.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_P1.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_P1.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_P10.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_P10.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_P2.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_P2.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_P3.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_P3.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_P4.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_P4.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_P5.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_P5.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_P6.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_P6.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_P7.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_P7.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_P8.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_P8.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_BB72_P9.raw THP1_A2_hplc A*02:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_BB72_P9.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_w632_filter_TR1.raw THP1_pan_filter A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_filter_TR1.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_w632_filter_TR2.raw THP1_pan_filter A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_filter_TR2.raw AML PXD015039_THP1_protocol_optimization batch3 F20180830_KP_THP1_w632_filter_TR3.raw THP1_pan_filter A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_filter_TR3.raw AML PXD015039_THP1_protocol_optimization batch4 F20180830_KP_THP1_w632_P1.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_P1.raw AML PXD015039_THP1_protocol_optimization batch4 F20180830_KP_THP1_w632_P10.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_P10.raw AML PXD015039_THP1_protocol_optimization batch4 F20180830_KP_THP1_w632_P2.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_P2.raw AML PXD015039_THP1_protocol_optimization batch4 F20180830_KP_THP1_w632_P3.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_P3.raw AML PXD015039_THP1_protocol_optimization batch4 F20180830_KP_THP1_w632_P4.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_P4.raw AML PXD015039_THP1_protocol_optimization batch4 F20180830_KP_THP1_w632_P5.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_P5.raw AML PXD015039_THP1_protocol_optimization batch4 F20180830_KP_THP1_w632_P6.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_P6.raw AML PXD015039_THP1_protocol_optimization batch4 F20180830_KP_THP1_w632_P7.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_P7.raw AML PXD015039_THP1_protocol_optimization batch4 F20180830_KP_THP1_w632_P8.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_P8.raw AML PXD015039_THP1_protocol_optimization batch4 F20180830_KP_THP1_w632_P9.raw THP1_pan_hplc A*02:01,B*15:11,C*03:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD015039/F20180830_KP_THP1_w632_P9.raw AML PXD038691 batch1 UPN01_CD34posCD38neg_class_I_Rep_1.raw UPN01_CD34posCD38neg A*11:01,B*07:02,B*44:03,C*07:02,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN01_CD34posCD38neg_class_I_Rep_1.raw AML PXD038691 batch1 UPN01_CD34posCD38neg_class_I_Rep_2.raw UPN01_CD34posCD38neg A*11:01,B*07:02,B*44:03,C*07:02,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN01_CD34posCD38neg_class_I_Rep_2.raw AML PXD038691 batch1 UPN01_CD34posCD38neg_class_I_Rep_3.raw UPN01_CD34posCD38neg A*11:01,B*07:02,B*44:03,C*07:02,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN01_CD34posCD38neg_class_I_Rep_3.raw AML PXD038691 batch1 UPN01_CD34posCD38neg_class_I_Rep_4.raw UPN01_CD34posCD38neg A*11:01,B*07:02,B*44:03,C*07:02,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN01_CD34posCD38neg_class_I_Rep_4.raw AML PXD038691 batch1 UPN02_CD34posCD38neg_class_I_Rep_1.raw UPN02_CD34posCD38neg A*01:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN02_CD34posCD38neg_class_I_Rep_1.raw AML PXD038691 batch1 UPN02_CD34posCD38neg_class_I_Rep_2.raw UPN02_CD34posCD38neg A*01:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN02_CD34posCD38neg_class_I_Rep_2.raw AML PXD038691 batch1 UPN02_CD34posCD38neg_class_I_Rep_3.raw UPN02_CD34posCD38neg A*01:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN02_CD34posCD38neg_class_I_Rep_3.raw AML PXD038691 batch1 UPN03_CD34posCD38neg_class_I_Rep_1.raw UPN03_CD34posCD38neg A*03:01,A*23:01,B*18:01,B*44:02,C*05:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN03_CD34posCD38neg_class_I_Rep_1.raw AML PXD038691 batch1 UPN03_CD34posCD38neg_class_I_Rep_2.raw UPN03_CD34posCD38neg A*03:01,A*23:01,B*18:01,B*44:02,C*05:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN03_CD34posCD38neg_class_I_Rep_2.raw AML PXD038691 batch1 UPN03_CD34posCD38neg_class_I_Rep_3.raw UPN03_CD34posCD38neg A*03:01,A*23:01,B*18:01,B*44:02,C*05:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN03_CD34posCD38neg_class_I_Rep_3.raw AML PXD038691 batch1 UPN03_bulk_class_I_Rep_1.raw UPN03_bulk A*03:01,A*23:01,B*18:01,B*44:02,C*05:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN03_bulk_class_I_Rep_1.raw AML PXD038691 batch1 UPN03_bulk_class_I_Rep_2.raw UPN03_bulk A*03:01,A*23:01,B*18:01,B*44:02,C*05:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN03_bulk_class_I_Rep_2.raw AML PXD038691 batch1 UPN03_bulk_class_I_Rep_3.raw UPN03_bulk A*03:01,A*23:01,B*18:01,B*44:02,C*05:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN03_bulk_class_I_Rep_3.raw AML PXD038691 batch1 UPN03_bulk_class_I_Rep_4.raw UPN03_bulk A*03:01,A*23:01,B*18:01,B*44:02,C*05:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN03_bulk_class_I_Rep_4.raw AML PXD038691 batch1 UPN03_bulk_class_I_Rep_5.raw UPN03_bulk A*03:01,A*23:01,B*18:01,B*44:02,C*05:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN03_bulk_class_I_Rep_5.raw AML PXD038691 batch1 UPN03_bulk_class_I_Rep_6.raw UPN03_bulk A*03:01,A*23:01,B*18:01,B*44:02,C*05:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN03_bulk_class_I_Rep_6.raw AML PXD038691 batch1 UPN03_bulk_class_I_Rep_7.raw UPN03_bulk A*03:01,A*23:01,B*18:01,B*44:02,C*05:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN03_bulk_class_I_Rep_7.raw AML PXD038691 batch1 UPN04_CD34posCD38neg_class_I_Rep_1.raw UPN04_CD34posCD38neg A*02:01,A*31:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN04_CD34posCD38neg_class_I_Rep_1.raw AML PXD038691 batch1 UPN04_CD34posCD38neg_class_I_Rep_2.raw UPN04_CD34posCD38neg A*02:01,A*31:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN04_CD34posCD38neg_class_I_Rep_2.raw AML PXD038691 batch1 UPN04_CD34posCD38neg_class_I_Rep_3.raw UPN04_CD34posCD38neg A*02:01,A*31:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN04_CD34posCD38neg_class_I_Rep_3.raw AML PXD038691 batch2 UPN04_CD34posCD38neg_class_I_Rep_4.raw UPN04_CD34posCD38neg A*02:01,A*31:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN04_CD34posCD38neg_class_I_Rep_4.raw AML PXD038691 batch2 UPN04_bulk_class_I_Rep_1.raw UPN04_bulk A*02:01,A*31:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN04_bulk_class_I_Rep_1.raw AML PXD038691 batch2 UPN04_bulk_class_I_Rep_2.raw UPN04_bulk A*02:01,A*31:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN04_bulk_class_I_Rep_2.raw AML PXD038691 batch2 UPN04_bulk_class_I_Rep_3.raw UPN04_bulk A*02:01,A*31:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN04_bulk_class_I_Rep_3.raw AML PXD038691 batch2 UPN05_CD34posCD38neg_class_I_Rep_1.raw UPN05_CD34posCD38neg A*01:01,A*29:02,B*08:01,B*44:03,C*07:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN05_CD34posCD38neg_class_I_Rep_1.raw AML PXD038691 batch2 UPN05_CD34posCD38neg_class_I_Rep_2.raw UPN05_CD34posCD38neg A*01:01,A*29:02,B*08:01,B*44:03,C*07:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN05_CD34posCD38neg_class_I_Rep_2.raw AML PXD038691 batch2 UPN05_CD34posCD38neg_class_I_Rep_3.raw UPN05_CD34posCD38neg A*01:01,A*29:02,B*08:01,B*44:03,C*07:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN05_CD34posCD38neg_class_I_Rep_3.raw AML PXD038691 batch2 UPN05_bulk_class_I_Rep_1.raw UPN05_bulk A*01:01,A*29:02,B*08:01,B*44:03,C*07:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN05_bulk_class_I_Rep_1.raw AML PXD038691 batch2 UPN05_bulk_class_I_Rep_2.raw UPN05_bulk A*01:01,A*29:02,B*08:01,B*44:03,C*07:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN05_bulk_class_I_Rep_2.raw AML PXD038691 batch2 UPN05_bulk_class_I_Rep_3.raw UPN05_bulk A*01:01,A*29:02,B*08:01,B*44:03,C*07:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN05_bulk_class_I_Rep_3.raw AML PXD038691 batch2 UPN05_bulk_class_I_Rep_4.raw UPN05_bulk A*01:01,A*29:02,B*08:01,B*44:03,C*07:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN05_bulk_class_I_Rep_4.raw AML PXD038691 batch2 UPN05_bulk_class_I_Rep_5.raw UPN05_bulk A*01:01,A*29:02,B*08:01,B*44:03,C*07:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN05_bulk_class_I_Rep_5.raw AML PXD038691 batch2 UPN05_bulk_class_I_Rep_6.raw UPN05_bulk A*01:01,A*29:02,B*08:01,B*44:03,C*07:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN05_bulk_class_I_Rep_6.raw AML PXD038691 batch2 UPN05_bulk_class_I_Rep_7.raw UPN05_bulk A*01:01,A*29:02,B*08:01,B*44:03,C*07:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN05_bulk_class_I_Rep_7.raw AML PXD038691 batch2 UPN06_CD34posCD38neg_class_I_Rep_1.raw UPN06_CD34posCD38neg A*03:01,A*23:01,B*08:01,B*15:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN06_CD34posCD38neg_class_I_Rep_1.raw AML PXD038691 batch2 UPN06_CD34posCD38neg_class_I_Rep_2.raw UPN06_CD34posCD38neg A*03:01,A*23:01,B*08:01,B*15:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN06_CD34posCD38neg_class_I_Rep_2.raw AML PXD038691 batch2 UPN06_CD34posCD38neg_class_I_Rep_3.raw UPN06_CD34posCD38neg A*03:01,A*23:01,B*08:01,B*15:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN06_CD34posCD38neg_class_I_Rep_3.raw AML PXD038691 batch2 UPN06_bulk_class_I_Rep_1.raw UPN06_bulk A*03:01,A*23:01,B*08:01,B*15:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN06_bulk_class_I_Rep_1.raw AML PXD038691 batch2 UPN06_bulk_class_I_Rep_2.raw UPN06_bulk A*03:01,A*23:01,B*08:01,B*15:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN06_bulk_class_I_Rep_2.raw AML PXD038691 batch2 UPN06_bulk_class_I_Rep_3.raw UPN06_bulk A*03:01,A*23:01,B*08:01,B*15:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN06_bulk_class_I_Rep_3.raw AML PXD038691 batch3 UPN06_bulk_class_I_Rep_4.raw UPN06_bulk A*03:01,A*23:01,B*08:01,B*15:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN06_bulk_class_I_Rep_4.raw AML PXD038691 batch3 UPN06_bulk_class_I_Rep_5.raw UPN06_bulk A*03:01,A*23:01,B*08:01,B*15:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN06_bulk_class_I_Rep_5.raw AML PXD038691 batch3 UPN06_bulk_class_I_Rep_6.raw UPN06_bulk A*03:01,A*23:01,B*08:01,B*15:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN06_bulk_class_I_Rep_6.raw AML PXD038691 batch3 UPN07_CD34posCD38neg_class_I_Rep_1.raw UPN07_CD34posCD38neg A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_CD34posCD38neg_class_I_Rep_1.raw AML PXD038691 batch3 UPN07_CD34posCD38neg_class_I_Rep_2.raw UPN07_CD34posCD38neg A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_CD34posCD38neg_class_I_Rep_2.raw AML PXD038691 batch3 UPN07_CD34posCD38neg_class_I_Rep_3.raw UPN07_CD34posCD38neg A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_CD34posCD38neg_class_I_Rep_3.raw AML PXD038691 batch3 UPN07_CD34posCD38neg_class_I_Rep_4.raw UPN07_CD34posCD38neg A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_CD34posCD38neg_class_I_Rep_4.raw AML PXD038691 batch3 UPN07_CD34posCD38neg_class_I_Rep_5.raw UPN07_CD34posCD38neg A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_CD34posCD38neg_class_I_Rep_5.raw AML PXD038691 batch3 UPN07_bulk_class_I_Rep_1.raw UPN07_bulk A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_bulk_class_I_Rep_1.raw AML PXD038691 batch3 UPN07_bulk_class_I_Rep_2.raw UPN07_bulk A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_bulk_class_I_Rep_2.raw AML PXD038691 batch3 UPN07_bulk_class_I_Rep_3.raw UPN07_bulk A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_bulk_class_I_Rep_3.raw AML PXD038691 batch3 UPN07_bulk_class_I_Rep_4.raw UPN07_bulk A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_bulk_class_I_Rep_4.raw AML PXD038691 batch3 UPN07_bulk_class_I_Rep_5.raw UPN07_bulk A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_bulk_class_I_Rep_5.raw AML PXD038691 batch3 UPN07_bulk_class_I_Rep_6.raw UPN07_bulk A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_bulk_class_I_Rep_6.raw AML PXD038691 batch3 UPN07_bulk_class_I_Rep_7.raw UPN07_bulk A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_bulk_class_I_Rep_7.raw AML PXD038691 batch3 UPN07_bulk_class_I_Rep_8.raw UPN07_bulk A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_bulk_class_I_Rep_8.raw AML PXD038691 batch3 UPN07_bulk_class_I_Rep_9.raw UPN07_bulk A*02:01,A*24:10,B*14:02,B*35:30,C*04:01,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN07_bulk_class_I_Rep_9.raw AML PXD038691 batch3 UPN08_CD34posCD38neg_class_I_Rep_1.raw UPN08_CD34posCD38neg A*01:01,A*25:01,B*18:01,B*57:01,C*06:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN08_CD34posCD38neg_class_I_Rep_1.raw AML PXD038691 batch3 UPN08_CD34posCD38neg_class_I_Rep_2.raw UPN08_CD34posCD38neg A*01:01,A*25:01,B*18:01,B*57:01,C*06:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN08_CD34posCD38neg_class_I_Rep_2.raw AML PXD038691 batch3 UPN08_CD34posCD38neg_class_I_Rep_3.raw UPN08_CD34posCD38neg A*01:01,A*25:01,B*18:01,B*57:01,C*06:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN08_CD34posCD38neg_class_I_Rep_3.raw AML PXD038691 batch4 UPN08_CD34posCD38neg_class_I_Rep_4.raw UPN08_CD34posCD38neg A*01:01,A*25:01,B*18:01,B*57:01,C*06:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN08_CD34posCD38neg_class_I_Rep_4.raw AML PXD038691 batch4 UPN08_bulk_class_I_Rep_1.raw UPN08_bulk A*01:01,A*25:01,B*18:01,B*57:01,C*06:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN08_bulk_class_I_Rep_1.raw AML PXD038691 batch4 UPN08_bulk_class_I_Rep_2.raw UPN08_bulk A*01:01,A*25:01,B*18:01,B*57:01,C*06:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN08_bulk_class_I_Rep_2.raw AML PXD038691 batch4 UPN08_bulk_class_I_Rep_3.raw UPN08_bulk A*01:01,A*25:01,B*18:01,B*57:01,C*06:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN08_bulk_class_I_Rep_3.raw AML PXD038691 batch4 UPN08_bulk_class_I_Rep_4.raw UPN08_bulk A*01:01,A*25:01,B*18:01,B*57:01,C*06:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN08_bulk_class_I_Rep_4.raw AML PXD038691 batch4 UPN08_bulk_class_I_Rep_5.raw UPN08_bulk A*01:01,A*25:01,B*18:01,B*57:01,C*06:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN08_bulk_class_I_Rep_5.raw AML PXD038691 batch4 UPN08_bulk_class_I_Rep_6.raw UPN08_bulk A*01:01,A*25:01,B*18:01,B*57:01,C*06:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN08_bulk_class_I_Rep_6.raw AML PXD038691 batch4 UPN09_CD34posCD38neg_class_I_Rep_1.raw UPN09_CD34posCD38neg A*01:01,B*08:01,B*13:02,C*06:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN09_CD34posCD38neg_class_I_Rep_1.raw AML PXD038691 batch4 UPN09_CD34posCD38neg_class_I_Rep_2.raw UPN09_CD34posCD38neg A*01:01,B*08:01,B*13:02,C*06:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN09_CD34posCD38neg_class_I_Rep_2.raw AML PXD038691 batch4 UPN09_CD34posCD38neg_class_I_Rep_3.raw UPN09_CD34posCD38neg A*01:01,B*08:01,B*13:02,C*06:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN09_CD34posCD38neg_class_I_Rep_3.raw AML PXD038691 batch4 UPN10_CD34posCD38neg_class_I_Rep_1.raw UPN10_CD34posCD38neg A*02:01,A*23:01,B*44:02,B*44:03,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN10_CD34posCD38neg_class_I_Rep_1.raw AML PXD038691 batch4 UPN10_CD34posCD38neg_class_I_Rep_2.raw UPN10_CD34posCD38neg A*02:01,A*23:01,B*44:02,B*44:03,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN10_CD34posCD38neg_class_I_Rep_2.raw AML PXD038691 batch4 UPN10_CD34posCD38neg_class_I_Rep_3.raw UPN10_CD34posCD38neg A*02:01,A*23:01,B*44:02,B*44:03,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN10_CD34posCD38neg_class_I_Rep_3.raw AML PXD038691 batch4 UPN12_class_I_Rep_1.raw UPN12 A*02:01,A*02:05,B*51:01,B*58:01,C*03:02,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN12_class_I_Rep_1.raw AML PXD038691 batch4 UPN12_class_I_Rep_2.raw UPN12 A*02:01,A*02:05,B*51:01,B*58:01,C*03:02,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN12_class_I_Rep_2.raw AML PXD038691 batch4 UPN12_class_I_Rep_3.raw UPN12 A*02:01,A*02:05,B*51:01,B*58:01,C*03:02,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN12_class_I_Rep_3.raw AML PXD038691 batch4 UPN12_relapse_class_I_Rep_1.raw UPN12_relapse A*02:01,A*02:05,B*51:01,B*58:01,C*03:02,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN12_relapse_class_I_Rep_1.raw AML PXD038691 batch4 UPN12_relapse_class_I_Rep_2.raw UPN12_relapse A*02:01,A*02:05,B*51:01,B*58:01,C*03:02,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN12_relapse_class_I_Rep_2.raw AML PXD038691 batch4 UPN12_relapse_class_I_Rep_3.raw UPN12_relapse A*02:01,A*02:05,B*51:01,B*58:01,C*03:02,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN12_relapse_class_I_Rep_3.raw AML PXD038691 batch4 UPN13_class_I_Rep_1.raw UPN13 A*11:01,A*68:01,B*15:01,B*51:01,C*03:03,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN13_class_I_Rep_1.raw AML PXD038691 batch5 UPN13_class_I_Rep_2.raw UPN13 A*11:01,A*68:01,B*15:01,B*51:01,C*03:03,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN13_class_I_Rep_2.raw AML PXD038691 batch5 UPN13_class_I_Rep_3.raw UPN13 A*11:01,A*68:01,B*15:01,B*51:01,C*03:03,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN13_class_I_Rep_3.raw AML PXD038691 batch5 UPN14_class_I_Rep_1.raw UPN14 A*02:01,A*11:01,B*35:01,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN14_class_I_Rep_1.raw AML PXD038691 batch5 UPN14_class_I_Rep_2.raw UPN14 A*02:01,A*11:01,B*35:01,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN14_class_I_Rep_2.raw AML PXD038691 batch5 UPN14_class_I_Rep_3.raw UPN14 A*02:01,A*11:01,B*35:01,B*44:02,C*04:01,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN14_class_I_Rep_3.raw AML PXD038691 batch5 UPN15_class_I_Rep_1.raw UPN15 A*02:01,A*11:01,B*08:01,B*57:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN15_class_I_Rep_1.raw AML PXD038691 batch5 UPN15_class_I_Rep_2.raw UPN15 A*02:01,A*11:01,B*08:01,B*57:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN15_class_I_Rep_2.raw AML PXD038691 batch5 UPN15_class_I_Rep_3.raw UPN15 A*02:01,A*11:01,B*08:01,B*57:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN15_class_I_Rep_3.raw AML PXD038691 batch5 UPN16_BM_class_I_Rep_1.raw UPN16_BM A*03:01,A*26:01,B*07:02,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN16_BM_class_I_Rep_1.raw AML PXD038691 batch5 UPN16_BM_class_I_Rep_2.raw UPN16_BM A*03:01,A*26:01,B*07:02,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN16_BM_class_I_Rep_2.raw AML PXD038691 batch5 UPN16_BM_class_I_Rep_3.raw UPN16_BM A*03:01,A*26:01,B*07:02,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN16_BM_class_I_Rep_3.raw AML PXD038691 batch5 UPN16_class_I_Rep_1.raw UPN16 A*03:01,A*26:01,B*07:02,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN16_class_I_Rep_1.raw AML PXD038691 batch5 UPN16_class_I_Rep_2.raw UPN16 A*03:01,A*26:01,B*07:02,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN16_class_I_Rep_2.raw AML PXD038691 batch5 UPN16_class_I_Rep_3.raw UPN16 A*03:01,A*26:01,B*07:02,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN16_class_I_Rep_3.raw AML PXD038691 batch5 UPN17_class_I_Rep_1.raw UPN17 A*03:01,A*66:01,B*14:01,B*41:02,C*08:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN17_class_I_Rep_1.raw AML PXD038691 batch5 UPN17_class_I_Rep_2.raw UPN17 A*03:01,A*66:01,B*14:01,B*41:02,C*08:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN17_class_I_Rep_2.raw AML PXD038691 batch5 UPN17_class_I_Rep_3.raw UPN17 A*03:01,A*66:01,B*14:01,B*41:02,C*08:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN17_class_I_Rep_3.raw AML PXD038691 batch5 UPN17_class_I_Rep_4.raw UPN17 A*03:01,A*66:01,B*14:01,B*41:02,C*08:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN17_class_I_Rep_4.raw AML PXD038691 batch5 UPN17_class_I_Rep_5.raw UPN17 A*03:01,A*66:01,B*14:01,B*41:02,C*08:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN17_class_I_Rep_5.raw AML PXD038691 batch5 UPN17_class_I_Rep_6.raw UPN17 A*03:01,A*66:01,B*14:01,B*41:02,C*08:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN17_class_I_Rep_6.raw AML PXD038691 batch6 UPN17_class_I_Rep_7.raw UPN17 A*03:01,A*66:01,B*14:01,B*41:02,C*08:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN17_class_I_Rep_7.raw AML PXD038691 batch6 UPN17_class_I_Rep_8.raw UPN17 A*03:01,A*66:01,B*14:01,B*41:02,C*08:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN17_class_I_Rep_8.raw AML PXD038691 batch6 UPN17_class_I_Rep_9.raw UPN17 A*03:01,A*66:01,B*14:01,B*41:02,C*08:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN17_class_I_Rep_9.raw AML PXD038691 batch6 UPN17_class_I_Rep_10.raw UPN17 A*03:01,A*66:01,B*14:01,B*41:02,C*08:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN17_class_I_Rep_10.raw AML PXD038691 batch6 UPN17_class_I_Rep_11.raw UPN17 A*03:01,A*66:01,B*14:01,B*41:02,C*08:02,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN17_class_I_Rep_11.raw AML PXD038691 batch6 UPN18_class_I_Rep_1.raw UPN18 A*02:01,A*24:02,B*07:02,B*51:01,C*07:02,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN18_class_I_Rep_1.raw AML PXD038691 batch6 UPN18_class_I_Rep_2.raw UPN18 A*02:01,A*24:02,B*07:02,B*51:01,C*07:02,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN18_class_I_Rep_2.raw AML PXD038691 batch6 UPN18_class_I_Rep_3.raw UPN18 A*02:01,A*24:02,B*07:02,B*51:01,C*07:02,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN18_class_I_Rep_3.raw AML PXD038691 batch6 UPN19_class_I_Rep_1.raw UPN19 A*02:01,A*31:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN19_class_I_Rep_1.raw AML PXD038691 batch6 UPN19_class_I_Rep_2.raw UPN19 A*02:01,A*31:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN19_class_I_Rep_2.raw AML PXD038691 batch6 UPN19_class_I_Rep_3.raw UPN19 A*02:01,A*31:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN19_class_I_Rep_3.raw AML PXD038691 batch6 UPN20_class_I_Rep_1.raw UPN20 A*02:05,A*24:02,B*07:02,B*55:01,C*01:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN20_class_I_Rep_1.raw AML PXD038691 batch6 UPN20_class_I_Rep_2.raw UPN20 A*02:05,A*24:02,B*07:02,B*55:01,C*01:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN20_class_I_Rep_2.raw AML PXD038691 batch6 UPN20_class_I_Rep_3.raw UPN20 A*02:05,A*24:02,B*07:02,B*55:01,C*01:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN20_class_I_Rep_3.raw AML PXD038691 batch6 UPN21_class_I_Rep_1.raw UPN21 A*02:01,A*25:01,B*44:02,B*57:01,C*05:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN21_class_I_Rep_1.raw AML PXD038691 batch6 UPN21_class_I_Rep_2.raw UPN21 A*02:01,A*25:01,B*44:02,B*57:01,C*05:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN21_class_I_Rep_2.raw AML PXD038691 batch6 UPN21_class_I_Rep_3.raw UPN21 A*02:01,A*25:01,B*44:02,B*57:01,C*05:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN21_class_I_Rep_3.raw AML PXD038691 batch6 UPN22_class_I_Rep_1.raw UPN22 A*01:01,A*03:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN22_class_I_Rep_1.raw AML PXD038691 batch6 UPN22_class_I_Rep_2.raw UPN22 A*01:01,A*03:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN22_class_I_Rep_2.raw AML PXD038691 batch6 UPN22_class_I_Rep_3.raw UPN22 A*01:01,A*03:01,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN22_class_I_Rep_3.raw AML PXD038691 batch7 UPN23_class_I_Rep_1.raw UPN23 A*02:02,A*11:01,B*35:02,B*44:05,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN23_class_I_Rep_1.raw AML PXD038691 batch7 UPN23_class_I_Rep_2.raw UPN23 A*02:02,A*11:01,B*35:02,B*44:05,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN23_class_I_Rep_2.raw AML PXD038691 batch7 UPN23_class_I_Rep_3.raw UPN23 A*02:02,A*11:01,B*35:02,B*44:05,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN23_class_I_Rep_3.raw AML PXD038691 batch7 UPN24_class_I_Rep_1.raw UPN24 A*03:01,A*24:02,B*07:02,B*51:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN24_class_I_Rep_1.raw AML PXD038691 batch7 UPN24_class_I_Rep_2.raw UPN24 A*03:01,A*24:02,B*07:02,B*51:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN24_class_I_Rep_2.raw AML PXD038691 batch7 UPN24_class_I_Rep_3.raw UPN24 A*03:01,A*24:02,B*07:02,B*51:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN24_class_I_Rep_3.raw AML PXD038691 batch7 UPN25_class_I_Rep_1.raw UPN25 A*26:01,A*32:01,B*15:01,B*38:01,C*03:03,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN25_class_I_Rep_1.raw AML PXD038691 batch7 UPN25_class_I_Rep_2.raw UPN25 A*26:01,A*32:01,B*15:01,B*38:01,C*03:03,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN25_class_I_Rep_2.raw AML PXD038691 batch7 UPN25_class_I_Rep_3.raw UPN25 A*26:01,A*32:01,B*15:01,B*38:01,C*03:03,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN25_class_I_Rep_3.raw AML PXD038691 batch7 UPN26_BM_class_I_Rep_1.raw UPN26_BM A*02:01,B*35:03,B*40:01,C*03:04,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN26_BM_class_I_Rep_1.raw AML PXD038691 batch7 UPN26_BM_class_I_Rep_2.raw UPN26_BM A*02:01,B*35:03,B*40:01,C*03:04,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN26_BM_class_I_Rep_2.raw AML PXD038691 batch7 UPN26_BM_class_I_Rep_3.raw UPN26_BM A*02:01,B*35:03,B*40:01,C*03:04,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN26_BM_class_I_Rep_3.raw AML PXD038691 batch7 UPN26_class_I_Rep_1.raw UPN26 A*02:01,B*35:03,B*40:01,C*03:04,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN26_class_I_Rep_1.raw AML PXD038691 batch7 UPN26_class_I_Rep_2.raw UPN26 A*02:01,B*35:03,B*40:01,C*03:04,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN26_class_I_Rep_2.raw AML PXD038691 batch7 UPN26_class_I_Rep_3.raw UPN26 A*02:01,B*35:03,B*40:01,C*03:04,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN26_class_I_Rep_3.raw AML PXD038691 batch7 UPN27_class_I_Rep_1.raw UPN27 A*02:01,A*33:01,B*13:02,B*14:02,C*06:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN27_class_I_Rep_1.raw AML PXD038691 batch7 UPN27_class_I_Rep_2.raw UPN27 A*02:01,A*33:01,B*13:02,B*14:02,C*06:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN27_class_I_Rep_2.raw AML PXD038691 batch7 UPN27_class_I_Rep_3.raw UPN27 A*02:01,A*33:01,B*13:02,B*14:02,C*06:02,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN27_class_I_Rep_3.raw AML PXD038691 batch7 UPN28_class_I_Rep_1.raw UPN28 A*30:01,A*33:03,B*13:02,B*44:02,C*06:02,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN28_class_I_Rep_1.raw AML PXD038691 batch7 UPN28_class_I_Rep_2.raw UPN28 A*30:01,A*33:03,B*13:02,B*44:02,C*06:02,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN28_class_I_Rep_2.raw AML PXD038691 batch8 UPN28_class_I_Rep_3.raw UPN28 A*30:01,A*33:03,B*13:02,B*44:02,C*06:02,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN28_class_I_Rep_3.raw AML PXD038691 batch8 UPN28_class_I_Rep_4.raw UPN28 A*30:01,A*33:03,B*13:02,B*44:02,C*06:02,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN28_class_I_Rep_4.raw AML PXD038691 batch8 UPN28_class_I_Rep_5.raw UPN28 A*30:01,A*33:03,B*13:02,B*44:02,C*06:02,C*07:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN28_class_I_Rep_5.raw AML PXD038691 batch8 UPN29_class_I_Rep_1.raw UPN29 A*02:01,A*68:02,B*15:01,B*53:01,C*03:03,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN29_class_I_Rep_1.raw AML PXD038691 batch8 UPN29_class_I_Rep_2.raw UPN29 A*02:01,A*68:02,B*15:01,B*53:01,C*03:03,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN29_class_I_Rep_2.raw AML PXD038691 batch8 UPN29_class_I_Rep_3.raw UPN29 A*02:01,A*68:02,B*15:01,B*53:01,C*03:03,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN29_class_I_Rep_3.raw AML PXD038691 batch8 UPN30_class_I_Rep_1.raw UPN30 A*24:02,A*25:01,B*07:02,B*52:01,C*07:02,C*12:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN30_class_I_Rep_1.raw AML PXD038691 batch8 UPN30_class_I_Rep_2.raw UPN30 A*24:02,A*25:01,B*07:02,B*52:01,C*07:02,C*12:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN30_class_I_Rep_2.raw AML PXD038691 batch8 UPN30_class_I_Rep_3.raw UPN30 A*24:02,A*25:01,B*07:02,B*52:01,C*07:02,C*12:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN30_class_I_Rep_3.raw AML PXD038691 batch8 UPN30_relapse_class_I_Rep_1.raw UPN30_relapse A*24:02,A*25:01,B*07:02,B*52:01,C*07:02,C*12:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN30_relapse_class_I_Rep_1.raw AML PXD038691 batch8 UPN30_relapse_class_I_Rep_2.raw UPN30_relapse A*24:02,A*25:01,B*07:02,B*52:01,C*07:02,C*12:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN30_relapse_class_I_Rep_2.raw AML PXD038691 batch8 UPN30_relapse_class_I_Rep_3.raw UPN30_relapse A*24:02,A*25:01,B*07:02,B*52:01,C*07:02,C*12:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN30_relapse_class_I_Rep_3.raw AML PXD038691 batch8 UPN31_class_I_Rep_1.raw UPN31 A*24:02,A*68:01,B*51:01,B*56:01,C*01:02,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN31_class_I_Rep_1.raw AML PXD038691 batch8 UPN31_class_I_Rep_2.raw UPN31 A*24:02,A*68:01,B*51:01,B*56:01,C*01:02,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN31_class_I_Rep_2.raw AML PXD038691 batch8 UPN31_class_I_Rep_3.raw UPN31 A*24:02,A*68:01,B*51:01,B*56:01,C*01:02,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN31_class_I_Rep_3.raw AML PXD038691 batch8 UPN32_class_I_Rep_1.raw UPN32 A*01:01,A*24:02,B*35:01,B*57:01,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN32_class_I_Rep_1.raw AML PXD038691 batch8 UPN32_class_I_Rep_2.raw UPN32 A*01:01,A*24:02,B*35:01,B*57:01,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN32_class_I_Rep_2.raw AML PXD038691 batch8 UPN32_class_I_Rep_3.raw UPN32 A*01:01,A*24:02,B*35:01,B*57:01,C*04:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN32_class_I_Rep_3.raw AML PXD038691 batch8 UPN33_class_I_Rep_1.raw UPN33 A*02:01,A*26:01,B*07:10,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN33_class_I_Rep_1.raw AML PXD038691 batch8 UPN33_class_I_Rep_2.raw UPN33 A*02:01,A*26:01,B*07:10,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN33_class_I_Rep_2.raw AML PXD038691 batch9 UPN33_class_I_Rep_3.raw UPN33 A*02:01,A*26:01,B*07:10,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN33_class_I_Rep_3.raw AML PXD038691 batch9 UPN34_class_I_Rep_1.raw UPN34 A*02:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN34_class_I_Rep_1.raw AML PXD038691 batch9 UPN34_class_I_Rep_2.raw UPN34 A*02:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN34_class_I_Rep_2.raw AML PXD038691 batch9 UPN34_class_I_Rep_3.raw UPN34 A*02:01,B*40:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN34_class_I_Rep_3.raw AML PXD038691 batch9 UPN35_class_I_Rep_1.raw UPN35 A*01:01,A*31:01,B*08:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN35_class_I_Rep_1.raw AML PXD038691 batch9 UPN35_class_I_Rep_2.raw UPN35 A*01:01,A*31:01,B*08:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN35_class_I_Rep_2.raw AML PXD038691 batch9 UPN35_class_I_Rep_3.raw UPN35 A*01:01,A*31:01,B*08:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN35_class_I_Rep_3.raw AML PXD038691 batch9 UPN36_class_I_Rep_1.raw UPN36 A*02:01,A*11:01,B*14:01,B*55:01,C*03:03,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN36_class_I_Rep_1.raw AML PXD038691 batch9 UPN36_class_I_Rep_2.raw UPN36 A*02:01,A*11:01,B*14:01,B*55:01,C*03:03,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN36_class_I_Rep_2.raw AML PXD038691 batch9 UPN36_class_I_Rep_3.raw UPN36 A*02:01,A*11:01,B*14:01,B*55:01,C*03:03,C*08:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN36_class_I_Rep_3.raw AML PXD038691 batch9 UPN37_class_I_Rep_1.raw UPN37 A*01:01,A*02:01,B*08:01,B*15:01,C*03:04,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN37_class_I_Rep_1.raw AML PXD038691 batch9 UPN37_class_I_Rep_2.raw UPN37 A*01:01,A*02:01,B*08:01,B*15:01,C*03:04,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN37_class_I_Rep_2.raw AML PXD038691 batch9 UPN37_class_I_Rep_3.raw UPN37 A*01:01,A*02:01,B*08:01,B*15:01,C*03:04,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN37_class_I_Rep_3.raw AML PXD038691 batch9 UPN38_class_I_Rep_1.raw UPN38 A*02:01,A*31:01,B*27:05,B*44:29,C*02:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN38_class_I_Rep_1.raw AML PXD038691 batch9 UPN38_class_I_Rep_2.raw UPN38 A*02:01,A*31:01,B*27:05,B*44:29,C*02:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN38_class_I_Rep_2.raw AML PXD038691 batch9 UPN38_class_I_Rep_3.raw UPN38 A*02:01,A*31:01,B*27:05,B*44:29,C*02:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN38_class_I_Rep_3.raw AML PXD038691 batch9 UPN39_class_I_Rep_1.raw UPN39 A*01:01,A*03:01,B*07:02,B*35:03,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038691/UPN39_class_I_Rep_1.raw AML PXD038691 batch9 UPN39_class_I_Rep_2.raw UPN39 A*01:01,A*03:01,B*07:02,B*35:03,C*06:02,C*07:02 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leukemia_UPN13 A*02:01,A*03:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015748/UPN13_class_I_Rep4.RAW AML phase2_PXD015748 UPN13_class_I_Rep5.raw leukemia_UPN13 A*02:01,A*03:01,B*18:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015748/UPN13_class_I_Rep5.RAW AML phase2_PXD015748 UPN14_class_I_Rep1.raw leukemia_UPN14 A*02:01,A*26:01,B*27:05,B*51:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015748/UPN14_class_I_Rep1.RAW AML phase2_PXD015748 UPN14_class_I_Rep2.raw leukemia_UPN14 A*02:01,A*26:01,B*27:05,B*51:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015748/UPN14_class_I_Rep2.RAW AML phase2_PXD015748 UPN14_class_I_Rep3.raw leukemia_UPN14 A*02:01,A*26:01,B*27:05,B*51:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015748/UPN14_class_I_Rep3.RAW AML phase2_PXD015748 UPN14_class_I_Rep4.raw leukemia_UPN14 A*02:01,A*26:01,B*27:05,B*51:01 DDA 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phase2_PXD015748 UPN15_class_I_Rep5.raw leukemia_UPN15 A*29:01,A*32:01,B*40:01,B*44:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015748/UPN15_class_I_Rep5.RAW AML phase2_PXD015748 UPN16_class_I_Rep1.raw leukemia_UPN16 A*02:01,A*24:02,B*44:02,B*50:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015748/UPN16_class_I_Rep1.RAW AML phase2_PXD015748 UPN16_class_I_Rep2.raw leukemia_UPN16 A*02:01,A*24:02,B*44:02,B*50:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015748/UPN16_class_I_Rep2.RAW AML phase2_PXD015748 UPN16_class_I_Rep3.raw leukemia_UPN16 A*02:01,A*24:02,B*44:02,B*50:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015748/UPN16_class_I_Rep3.RAW AML phase2_PXD015748 UPN16_class_I_Rep4.raw leukemia_UPN16 A*02:01,A*24:02,B*44:02,B*50:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD015748/UPN16_class_I_Rep4.RAW AML phase2_PXD015748 UPN16_class_I_Rep5.raw leukemia_UPN16 A*02:01,A*24:02,B*44:02,B*50:01 DDA 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DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa103_classI_Rep4.raw OV PXD007635_schuster batch1 OvCa103_classI_Rep5.raw OvCa103 A*02:01,A*24:02,B*27:02,B*27:05,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa103_classI_Rep5.raw OV PXD007635_schuster batch1 OvCa104_classI_Rep1.raw OvCa104 A*03:01,B*07:02,B*35:08,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa104_classI_Rep1.raw OV PXD007635_schuster batch1 OvCa104_classI_Rep2.raw OvCa104 A*03:01,B*07:02,B*35:08,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa104_classI_Rep2.raw OV PXD007635_schuster batch1 OvCa104_classI_Rep3.raw OvCa104 A*03:01,B*07:02,B*35:08,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa104_classI_Rep3.raw OV PXD007635_schuster batch1 OvCa104_classI_Rep4.raw OvCa104 A*03:01,B*07:02,B*35:08,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa104_classI_Rep4.raw OV PXD007635_schuster batch1 OvCa105_classI_Rep1.raw OvCa105 A*26:01,A*68:01,B*18:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa105_classI_Rep1.raw OV PXD007635_schuster batch1 OvCa105_classI_Rep2.raw OvCa105 A*26:01,A*68:01,B*18:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa105_classI_Rep2.raw OV PXD007635_schuster batch1 OvCa105_classI_Rep3.raw OvCa105 A*26:01,A*68:01,B*18:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa105_classI_Rep3.raw OV PXD007635_schuster batch1 OvCa105_classI_Rep4.raw OvCa105 A*26:01,A*68:01,B*18:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa105_classI_Rep4.raw OV PXD007635_schuster batch1 OvCa105_classI_Rep5.raw OvCa105 A*26:01,A*68:01,B*18:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa105_classI_Rep5.raw OV PXD007635_schuster batch1 OvCa109_classI_Rep1.raw OvCa109 A*02:01,A*23:01,B*40:01,B*49:01,C*07:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa109_classI_Rep1.raw OV PXD007635_schuster batch1 OvCa109_classI_Rep2.raw OvCa109 A*02:01,A*23:01,B*40:01,B*49:01,C*07:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa109_classI_Rep2.raw OV PXD007635_schuster batch1 OvCa109_classI_Rep3.raw OvCa109 A*02:01,A*23:01,B*40:01,B*49:01,C*07:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa109_classI_Rep3.raw OV PXD007635_schuster batch2 OvCa109_classI_Rep4.raw OvCa109 A*02:01,A*23:01,B*40:01,B*49:01,C*07:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa109_classI_Rep4.raw OV PXD007635_schuster batch2 OvCa10_classI_Rep1.raw OvCa10 A*02:01,A*11:01,B*44:05,B*51:01,C*02:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa10_classI_Rep1.RAW OV PXD007635_schuster batch2 OvCa10_classI_Rep2.raw OvCa10 A*02:01,A*11:01,B*44:05,B*51:01,C*02:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa10_classI_Rep2.RAW OV PXD007635_schuster batch2 OvCa10_classI_Rep3.raw OvCa10 A*02:01,A*11:01,B*44:05,B*51:01,C*02:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa10_classI_Rep3.RAW OV PXD007635_schuster batch2 OvCa10_classI_Rep4.raw OvCa10 A*02:01,A*11:01,B*44:05,B*51:01,C*02:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa10_classI_Rep4.RAW OV PXD007635_schuster batch2 OvCa10_classI_Rep5.raw OvCa10 A*02:01,A*11:01,B*44:05,B*51:01,C*02:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa10_classI_Rep5.RAW OV PXD007635_schuster batch2 OvCa111_classI_Rep1.raw OvCa111 A*01:01,A*25:01,B*08:01,B*44:02,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa111_classI_Rep1.raw OV PXD007635_schuster batch2 OvCa111_classI_Rep2.raw OvCa111 A*01:01,A*25:01,B*08:01,B*44:02,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa111_classI_Rep2.raw OV PXD007635_schuster batch2 OvCa111_classI_Rep3.raw OvCa111 A*01:01,A*25:01,B*08:01,B*44:02,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa111_classI_Rep3.raw OV PXD007635_schuster batch2 OvCa111_classI_Rep4.raw OvCa111 A*01:01,A*25:01,B*08:01,B*44:02,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa111_classI_Rep4.raw OV PXD007635_schuster batch2 OvCa114_classI_Rep1.raw OvCa114 A*29:02,B*44:03,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa114_classI_Rep1.raw OV PXD007635_schuster batch2 OvCa114_classI_Rep2.raw OvCa114 A*29:02,B*44:03,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa114_classI_Rep2.raw OV PXD007635_schuster batch2 OvCa114_classI_Rep3.raw OvCa114 A*29:02,B*44:03,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa114_classI_Rep3.raw OV PXD007635_schuster batch2 OvCa114_classI_Rep4.raw OvCa114 A*29:02,B*44:03,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa114_classI_Rep4.raw OV PXD007635_schuster batch2 OvCa12_classI_Rep1.raw OvCa12 A*24:02,A*31:01,B*35:03,B*49:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa12_classI_Rep1.RAW OV PXD007635_schuster batch2 OvCa12_classI_Rep2.raw OvCa12 A*24:02,A*31:01,B*35:03,B*49:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa12_classI_Rep2.RAW OV PXD007635_schuster batch2 OvCa13_classI_Rep1.raw OvCa13 A*02:01,B*35:01, B*40:01,C*03:03, C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa13_classI_Rep1.RAW OV PXD007635_schuster batch2 OvCa13_classI_Rep2.raw OvCa13 A*02:01,B*35:01, B*40:01,C*03:03, C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa13_classI_Rep2.RAW OV PXD007635_schuster batch2 OvCa13_classI_Rep3.raw OvCa13 A*02:01,B*35:01, B*40:01,C*03:03, C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa13_classI_Rep3.RAW OV PXD007635_schuster batch2 OvCa13_classI_Rep4.raw OvCa13 A*02:01,B*35:01, B*40:01,C*03:03, C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa13_classI_Rep4.RAW OV PXD007635_schuster batch3 OvCa13_classI_Rep5.raw OvCa13 A*02:01,B*35:01, B*40:01,C*03:03, C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa13_classI_Rep5.RAW OV PXD007635_schuster batch3 OvCa15_classI_Rep1.raw OvCa15 A*11:01,A*24:02,B*07:02,B*55:01,C*03:03,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa15_classI_Rep1.RAW OV PXD007635_schuster batch3 OvCa15_classI_Rep2.raw OvCa15 A*11:01,A*24:02,B*07:02,B*55:01,C*03:03,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa15_classI_Rep2.RAW OV PXD007635_schuster batch3 OvCa16_classI_Rep1.raw OvCa16 A*02:01,B*40:01,B*44:02,C*03:03,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa16_classI_Rep1.RAW OV PXD007635_schuster batch3 OvCa16_classI_Rep2.raw OvCa16 A*02:01,B*40:01,B*44:02,C*03:03,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa16_classI_Rep2.RAW OV PXD007635_schuster batch3 OvCa16_classI_Rep3.raw OvCa16 A*02:01,B*40:01,B*44:02,C*03:03,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa16_classI_Rep3.RAW OV PXD007635_schuster batch3 OvCa16_classI_Rep4.raw OvCa16 A*02:01,B*40:01,B*44:02,C*03:03,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa16_classI_Rep4.RAW OV PXD007635_schuster batch3 OvCa16_classI_Rep5.raw OvCa16 A*02:01,B*40:01,B*44:02,C*03:03,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa16_classI_Rep5.RAW OV PXD007635_schuster batch3 OvCa23_classI_Rep1.raw OvCa23 A*01:01,A*03:01,B*08:01, B*35:01, C*04:01, C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa23_classI_Rep1.RAW OV PXD007635_schuster batch3 OvCa23_classI_Rep2.raw OvCa23 A*01:01,A*03:01,B*08:01, B*35:01, C*04:01, C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa23_classI_Rep2.RAW OV PXD007635_schuster batch3 OvCa23_classI_Rep3.raw OvCa23 A*01:01,A*03:01,B*08:01, B*35:01, C*04:01, C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa23_classI_Rep3.RAW OV PXD007635_schuster batch3 OvCa28_classI_Rep1.raw OvCa28 A*01:01,A*02:01,B*27:05,B*52:01,C*01:02,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa28_classI_Rep1.RAW OV PXD007635_schuster batch3 OvCa28_classI_Rep2.raw OvCa28 A*01:01,A*02:01,B*27:05,B*52:01,C*01:02,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa28_classI_Rep2.RAW OV PXD007635_schuster batch3 OvCa28_classI_Rep3.raw OvCa28 A*01:01,A*02:01,B*27:05,B*52:01,C*01:02,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa28_classI_Rep3.RAW OV PXD007635_schuster batch3 OvCa28_classI_Rep4.raw OvCa28 A*01:01,A*02:01,B*27:05,B*52:01,C*01:02,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa28_classI_Rep4.RAW OV PXD007635_schuster batch3 OvCa28_classI_Rep5.raw OvCa28 A*01:01,A*02:01,B*27:05,B*52:01,C*01:02,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa28_classI_Rep5.RAW OV PXD007635_schuster batch3 OvCa39_classI_Rep1.raw OvCa39 A*25:01,A*31:01,B*07:02,B*18:01,C*12:03,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa39_classI_Rep1.RAW OV PXD007635_schuster batch3 OvCa39_classI_Rep2.raw OvCa39 A*25:01,A*31:01,B*07:02,B*18:01,C*12:03,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa39_classI_Rep2.RAW OV PXD007635_schuster batch3 OvCa41_classI_Rep1.raw OvCa41 A*02:01,A*24:02,B*18:01, B*51:01, C*02:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa41_classI_Rep1.RAW OV PXD007635_schuster batch3 OvCa41_classI_Rep2.raw OvCa41 A*02:01,A*24:02,B*18:01, B*51:01, C*02:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa41_classI_Rep2.RAW OV PXD007635_schuster batch4 OvCa41_classI_Rep3.raw OvCa41 A*02:01,A*24:02,B*18:01, B*51:01, C*02:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa41_classI_Rep3.RAW OV PXD007635_schuster batch4 OvCa43_classI_Rep1.raw OvCa43 A*02:01,A*32:01,B*18:01,B*35:01,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa43_classI_Rep1.RAW OV PXD007635_schuster batch4 OvCa43_classI_Rep2.raw OvCa43 A*02:01,A*32:01,B*18:01,B*35:01,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa43_classI_Rep2.RAW OV PXD007635_schuster batch4 OvCa43_classI_Rep3.raw OvCa43 A*02:01,A*32:01,B*18:01,B*35:01,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa43_classI_Rep3.RAW OV PXD007635_schuster batch4 OvCa45_classI_Rep1.raw OvCa45 A*01:01,A*23:01,B*08:01,B*44:02,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa45_classI_Rep1.RAW OV PXD007635_schuster batch4 OvCa45_classI_Rep2.raw OvCa45 A*01:01,A*23:01,B*08:01,B*44:02,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa45_classI_Rep2.RAW OV PXD007635_schuster batch4 OvCa45_classI_Rep3.raw OvCa45 A*01:01,A*23:01,B*08:01,B*44:02,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa45_classI_Rep3.RAW OV PXD007635_schuster batch4 OvCa45_classI_Rep4.raw OvCa45 A*01:01,A*23:01,B*08:01,B*44:02,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa45_classI_Rep4.RAW OV PXD007635_schuster batch4 OvCa45_classI_Rep5.raw OvCa45 A*01:01,A*23:01,B*08:01,B*44:02,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa45_classI_Rep5.RAW OV PXD007635_schuster batch4 OvCa48_classI_Rep1.raw OvCa48 A*02:01,A*25:01,B*15:01,B*41:02,C*03:04,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa48_classI_Rep1.RAW OV PXD007635_schuster batch4 OvCa48_classI_Rep2.raw OvCa48 A*02:01,A*25:01,B*15:01,B*41:02,C*03:04,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa48_classI_Rep2.RAW OV PXD007635_schuster batch4 OvCa48_classI_Rep3.raw OvCa48 A*02:01,A*25:01,B*15:01,B*41:02,C*03:04,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa48_classI_Rep3.RAW OV PXD007635_schuster batch4 OvCa48_classI_Rep4.raw OvCa48 A*02:01,A*25:01,B*15:01,B*41:02,C*03:04,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa48_classI_Rep4.RAW OV PXD007635_schuster batch4 OvCa48_classI_Rep5.raw OvCa48 A*02:01,A*25:01,B*15:01,B*41:02,C*03:04,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa48_classI_Rep5.RAW OV PXD007635_schuster batch4 OvCa48_classI_Rep6.raw OvCa48 A*02:01,A*25:01,B*15:01,B*41:02,C*03:04,C*17:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa48_classI_Rep6.RAW OV PXD007635_schuster batch4 OvCa53_classI_Rep1.raw OvCa53 A*02:01,A*03:01,B*27:01,B*35:01,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa53_classI_Rep1.RAW OV PXD007635_schuster batch4 OvCa53_classI_Rep2.raw OvCa53 A*02:01,A*03:01,B*27:01,B*35:01,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa53_classI_Rep2.RAW OV PXD007635_schuster batch4 OvCa53_classI_Rep3.raw OvCa53 A*02:01,A*03:01,B*27:01,B*35:01,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa53_classI_Rep3.RAW OV PXD007635_schuster batch4 OvCa53_classI_Rep4.raw OvCa53 A*02:01,A*03:01,B*27:01,B*35:01,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa53_classI_Rep4.RAW OV PXD007635_schuster batch4 OvCa53_classI_Rep5.raw OvCa53 A*02:01,A*03:01,B*27:01,B*35:01,C*02:02,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa53_classI_Rep5.RAW OV PXD007635_schuster batch5 OvCa54_classI_Rep1.raw OvCa54 A*02:01,A*11:01,B*35:01,B*35:03,C*04:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa54_classI_Rep1.RAW OV PXD007635_schuster batch5 OvCa54_classI_Rep2.raw OvCa54 A*02:01,A*11:01,B*35:01,B*35:03,C*04:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa54_classI_Rep2.RAW OV PXD007635_schuster batch5 OvCa54_classI_Rep3.raw OvCa54 A*02:01,A*11:01,B*35:01,B*35:03,C*04:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa54_classI_Rep3.RAW OV PXD007635_schuster batch5 OvCa54_classI_Rep4.raw OvCa54 A*02:01,A*11:01,B*35:01,B*35:03,C*04:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa54_classI_Rep4.RAW OV PXD007635_schuster batch5 OvCa54_classI_Rep5.raw OvCa54 A*02:01,A*11:01,B*35:01,B*35:03,C*04:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa54_classI_Rep5.RAW OV PXD007635_schuster batch5 OvCa57_classI_Rep1.raw OvCa57 A*25:01,A*32:01,B*15:01,B*18:01,C*03:03,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa57_classI_Rep1.RAW OV PXD007635_schuster batch5 OvCa57_classI_Rep2.raw OvCa57 A*25:01,A*32:01,B*15:01,B*18:01,C*03:03,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa57_classI_Rep2.RAW OV PXD007635_schuster batch5 OvCa57_classI_Rep3.raw OvCa57 A*25:01,A*32:01,B*15:01,B*18:01,C*03:03,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa57_classI_Rep3.RAW OV PXD007635_schuster batch5 OvCa57_classI_Rep4.raw OvCa57 A*25:01,A*32:01,B*15:01,B*18:01,C*03:03,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa57_classI_Rep4.RAW OV PXD007635_schuster batch5 OvCa57_classI_Rep5.raw OvCa57 A*25:01,A*32:01,B*15:01,B*18:01,C*03:03,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa57_classI_Rep5.RAW OV PXD007635_schuster batch5 OvCa58_classI_Rep1.raw OvCa58 A*02:01,A*03:01,B*35:01,C*03:01,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa58_classI_Rep1.RAW OV PXD007635_schuster batch5 OvCa58_classI_Rep2.raw OvCa58 A*02:01,A*03:01,B*35:01,C*03:01,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa58_classI_Rep2.RAW OV PXD007635_schuster batch5 OvCa58_classI_Rep3.raw OvCa58 A*02:01,A*03:01,B*35:01,C*03:01,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa58_classI_Rep3.RAW OV PXD007635_schuster batch5 OvCa58_classI_Rep4.raw OvCa58 A*02:01,A*03:01,B*35:01,C*03:01,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa58_classI_Rep4.RAW OV PXD007635_schuster batch5 OvCa58_classI_Rep5.raw OvCa58 A*02:01,A*03:01,B*35:01,C*03:01,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa58_classI_Rep5.RAW OV PXD007635_schuster batch5 OvCa59_classI_Rep1.raw OvCa59 A*03:01,A*30:01,B*13:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa59_classI_Rep1.RAW OV PXD007635_schuster batch5 OvCa59_classI_Rep2.raw OvCa59 A*03:01,A*30:01,B*13:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa59_classI_Rep2.RAW OV PXD007635_schuster batch5 OvCa59_classI_Rep3.raw OvCa59 A*03:01,A*30:01,B*13:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa59_classI_Rep3.RAW OV PXD007635_schuster batch5 OvCa59_classI_Rep4.raw OvCa59 A*03:01,A*30:01,B*13:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa59_classI_Rep4.RAW OV PXD007635_schuster batch5 OvCa59_classI_Rep5.raw OvCa59 A*03:01,A*30:01,B*13:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa59_classI_Rep5.RAW OV PXD007635_schuster batch6 OvCa60_classI_Rep1.raw OvCa60 A*24:02,A*25:01,B*13:02,B*18:01,C*12:03,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa60_classI_Rep1.RAW OV PXD007635_schuster batch6 OvCa60_classI_Rep2.raw OvCa60 A*24:02,A*25:01,B*13:02,B*18:01,C*12:03,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa60_classI_Rep2.RAW OV PXD007635_schuster batch6 OvCa60_classI_Rep3.raw OvCa60 A*24:02,A*25:01,B*13:02,B*18:01,C*12:03,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa60_classI_Rep3.RAW OV PXD007635_schuster batch6 OvCa60_classI_Rep4.raw OvCa60 A*24:02,A*25:01,B*13:02,B*18:01,C*12:03,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa60_classI_Rep4.RAW OV PXD007635_schuster batch6 OvCa60_classI_Rep5.raw OvCa60 A*24:02,A*25:01,B*13:02,B*18:01,C*12:03,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa60_classI_Rep5.RAW OV PXD007635_schuster batch6 OvCa64_classI_Rep1.raw OvCa64 A*01:01,A*25:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa64_classI_Rep1.RAW OV PXD007635_schuster batch6 OvCa64_classI_Rep2.raw OvCa64 A*01:01,A*25:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa64_classI_Rep2.RAW OV PXD007635_schuster batch6 OvCa64_classI_Rep3.raw OvCa64 A*01:01,A*25:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa64_classI_Rep3.RAW OV PXD007635_schuster batch6 OvCa64_classI_Rep4.raw OvCa64 A*01:01,A*25:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa64_classI_Rep4.RAW OV PXD007635_schuster batch6 OvCa64_classI_Rep5.raw OvCa64 A*01:01,A*25:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa64_classI_Rep5.RAW OV PXD007635_schuster batch6 OvCa65_classI_Rep1.raw OvCa65 A*01:01,A*24:02,B*15:01,B*35:01,C*04:01,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa65_classI_Rep1.RAW OV PXD007635_schuster batch6 OvCa65_classI_Rep2.raw OvCa65 A*01:01,A*24:02,B*15:01,B*35:01,C*04:01,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa65_classI_Rep2.RAW OV PXD007635_schuster batch6 OvCa65_classI_Rep3.raw OvCa65 A*01:01,A*24:02,B*15:01,B*35:01,C*04:01,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa65_classI_Rep3.RAW OV PXD007635_schuster batch6 OvCa65_classI_Rep4.raw OvCa65 A*01:01,A*24:02,B*15:01,B*35:01,C*04:01,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa65_classI_Rep4.RAW OV PXD007635_schuster batch6 OvCa65_classI_Rep5.raw OvCa65 A*01:01,A*24:02,B*15:01,B*35:01,C*04:01,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa65_classI_Rep5.RAW OV PXD007635_schuster batch6 OvCa66_classI_Rep1.raw OvCa66 A*11:01,A*29:02,B*18:01,B*44:03,C*05:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa66_classI_Rep1.RAW OV PXD007635_schuster batch6 OvCa66_classI_Rep2.raw OvCa66 A*11:01,A*29:02,B*18:01,B*44:03,C*05:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa66_classI_Rep2.RAW OV PXD007635_schuster batch6 OvCa66_classI_Rep3.raw OvCa66 A*11:01,A*29:02,B*18:01,B*44:03,C*05:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa66_classI_Rep3.RAW OV PXD007635_schuster batch6 OvCa66_classI_Rep4.raw OvCa66 A*11:01,A*29:02,B*18:01,B*44:03,C*05:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa66_classI_Rep4.RAW OV PXD007635_schuster batch6 OvCa66_classI_Rep5.raw OvCa66 A*11:01,A*29:02,B*18:01,B*44:03,C*05:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa66_classI_Rep5.RAW OV PXD007635_schuster batch7 OvCa68_classI_Rep1.raw OvCa68 A*02:01,A*01:01,B*44:02,B*37:01,C*06:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa68_classI_Rep1.RAW OV PXD007635_schuster batch7 OvCa68_classI_Rep2.raw OvCa68 A*02:01,A*01:01,B*44:02,B*37:01,C*06:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa68_classI_Rep2.RAW OV PXD007635_schuster batch7 OvCa68_classI_Rep3.raw OvCa68 A*02:01,A*01:01,B*44:02,B*37:01,C*06:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa68_classI_Rep3.RAW OV PXD007635_schuster batch7 OvCa68_classI_Rep4.raw OvCa68 A*02:01,A*01:01,B*44:02,B*37:01,C*06:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa68_classI_Rep4.RAW OV PXD007635_schuster batch7 OvCa68_classI_Rep5.raw OvCa68 A*02:01,A*01:01,B*44:02,B*37:01,C*06:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa68_classI_Rep5.RAW OV PXD007635_schuster batch7 OvCa69_classI_Rep1.raw OvCa69 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa69_classI_Rep1.RAW OV PXD007635_schuster batch7 OvCa69_classI_Rep2.raw OvCa69 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa69_classI_Rep2.RAW OV PXD007635_schuster batch7 OvCa69_classI_Rep3.raw OvCa69 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa69_classI_Rep3.RAW OV PXD007635_schuster batch7 OvCa70_classI_Rep1.raw OvCa70 A*01:01,A*02:01,B*07:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa70_classI_Rep1.RAW OV PXD007635_schuster batch7 OvCa70_classI_Rep2.raw OvCa70 A*01:01,A*02:01,B*07:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa70_classI_Rep2.RAW OV PXD007635_schuster batch7 OvCa70_classI_Rep3.raw OvCa70 A*01:01,A*02:01,B*07:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa70_classI_Rep3.RAW OV PXD007635_schuster batch7 OvCa70_classI_Rep4.raw OvCa70 A*01:01,A*02:01,B*07:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa70_classI_Rep4.RAW OV PXD007635_schuster batch7 OvCa70_classI_Rep5.raw OvCa70 A*01:01,A*02:01,B*07:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa70_classI_Rep5.RAW OV PXD007635_schuster batch7 OvCa72_classI_Rep1.raw OvCa72 A*03:01,A*01:01,B*08:01,B*07:02,C*07:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa72_classI_Rep1.RAW OV PXD007635_schuster batch7 OvCa72_classI_Rep2.raw OvCa72 A*03:01,A*01:01,B*08:01,B*07:02,C*07:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa72_classI_Rep2.RAW OV PXD007635_schuster batch7 OvCa72_classI_Rep3.raw OvCa72 A*03:01,A*01:01,B*08:01,B*07:02,C*07:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa72_classI_Rep3.RAW OV PXD007635_schuster batch7 OvCa73_classI_Rep1.raw OvCa73 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa73_classI_Rep1.RAW OV PXD007635_schuster batch7 OvCa73_classI_Rep2.raw OvCa73 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa73_classI_Rep2.RAW OV PXD007635_schuster batch7 OvCa73_classI_Rep3.raw OvCa73 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa73_classI_Rep3.RAW OV PXD007635_schuster batch7 OvCa73_classI_Rep4.raw OvCa73 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa73_classI_Rep4.RAW OV PXD007635_schuster batch8 OvCa73_classI_Rep5.raw OvCa73 A*01:01,B*08:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa73_classI_Rep5.RAW OV PXD007635_schuster batch8 OvCa74_classI_Rep1.raw OvCa74 A*02:01,B*18:01,B*51:01,C*07:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa74_classI_Rep1.RAW OV PXD007635_schuster batch8 OvCa74_classI_Rep2.raw OvCa74 A*02:01,B*18:01,B*51:01,C*07:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa74_classI_Rep2.RAW OV PXD007635_schuster batch8 OvCa74_classI_Rep3.raw OvCa74 A*02:01,B*18:01,B*51:01,C*07:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa74_classI_Rep3.RAW OV PXD007635_schuster batch8 OvCa74_classI_Rep4.raw OvCa74 A*02:01,B*18:01,B*51:01,C*07:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa74_classI_Rep4.RAW OV PXD007635_schuster batch8 OvCa74_classI_Rep5.raw OvCa74 A*02:01,B*18:01,B*51:01,C*07:02,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa74_classI_Rep5.RAW OV PXD007635_schuster batch8 OvCa79_classI_Rep1.raw OvCa79 A*01:01,A*31:01,B*08:01,B*51:01,C*07:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa79_classI_Rep1.RAW OV PXD007635_schuster batch8 OvCa79_classI_Rep2.raw OvCa79 A*01:01,A*31:01,B*08:01,B*51:01,C*07:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa79_classI_Rep2.RAW OV PXD007635_schuster batch8 OvCa79_classI_Rep3.raw OvCa79 A*01:01,A*31:01,B*08:01,B*51:01,C*07:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa79_classI_Rep3.RAW OV PXD007635_schuster batch8 OvCa79_classI_Rep4.raw OvCa79 A*01:01,A*31:01,B*08:01,B*51:01,C*07:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa79_classI_Rep4.RAW OV PXD007635_schuster batch8 OvCa79_classI_Rep5.raw OvCa79 A*01:01,A*31:01,B*08:01,B*51:01,C*07:01,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa79_classI_Rep5.RAW OV PXD007635_schuster batch8 OvCa80_classI_Rep1.raw OvCa80 A*25:01,A*32:01,B*18:01,B*39:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa80_classI_Rep1.RAW OV PXD007635_schuster batch8 OvCa80_classI_Rep2.raw OvCa80 A*25:01,A*32:01,B*18:01,B*39:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa80_classI_Rep2.RAW OV PXD007635_schuster batch8 OvCa80_classI_Rep3.raw OvCa80 A*25:01,A*32:01,B*18:01,B*39:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa80_classI_Rep3.RAW OV PXD007635_schuster batch8 OvCa80_classI_Rep4.raw OvCa80 A*25:01,A*32:01,B*18:01,B*39:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa80_classI_Rep4.RAW OV PXD007635_schuster batch8 OvCa81_classI_Rep1.raw OvCa81 A*02:01,B*45:01,B*56:01,C*07:02,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa81_classI_Rep1.RAW OV PXD007635_schuster batch8 OvCa81_classI_Rep2.raw OvCa81 A*02:01,B*45:01,B*56:01,C*07:02,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa81_classI_Rep2.RAW OV PXD007635_schuster batch8 OvCa81_classI_Rep3.raw OvCa81 A*02:01,B*45:01,B*56:01,C*07:02,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa81_classI_Rep3.RAW OV PXD007635_schuster batch8 OvCa81_classI_Rep4.raw OvCa81 A*02:01,B*45:01,B*56:01,C*07:02,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa81_classI_Rep4.RAW OV PXD007635_schuster batch8 OvCa81_classI_Rep5.raw OvCa81 A*02:01,B*45:01,B*56:01,C*07:02,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa81_classI_Rep5.RAW OV PXD007635_schuster batch9 OvCa82_classI_Rep1.raw OvCa82 A*01:01,A*03:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa82_classI_Rep1.RAW OV PXD007635_schuster batch9 OvCa82_classI_Rep2.raw OvCa82 A*01:01,A*03:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa82_classI_Rep2.RAW OV PXD007635_schuster batch9 OvCa82_classI_Rep3.raw OvCa82 A*01:01,A*03:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa82_classI_Rep3.RAW OV PXD007635_schuster batch9 OvCa82_classI_Rep4.raw OvCa82 A*01:01,A*03:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa82_classI_Rep4.RAW OV PXD007635_schuster batch9 OvCa82_classI_Rep5.raw OvCa82 A*01:01,A*03:01,B*08:01,B*38:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa82_classI_Rep5.RAW OV PXD007635_schuster batch9 OvCa83_classI_Rep1.raw OvCa83 A*02:01,A*11:01,B*51:01,B*55:01,C*03:03,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa83_classI_Rep1.RAW OV PXD007635_schuster batch9 OvCa83_classI_Rep2.raw OvCa83 A*02:01,A*11:01,B*51:01,B*55:01,C*03:03,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa83_classI_Rep2.RAW OV PXD007635_schuster batch9 OvCa83_classI_Rep3.raw OvCa83 A*02:01,A*11:01,B*51:01,B*55:01,C*03:03,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa83_classI_Rep3.RAW OV PXD007635_schuster batch9 OvCa83_classI_Rep4.raw OvCa83 A*02:01,A*11:01,B*51:01,B*55:01,C*03:03,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa83_classI_Rep4.RAW OV PXD007635_schuster batch9 OvCa83_classI_Rep5.raw OvCa83 A*02:01,A*11:01,B*51:01,B*55:01,C*03:03,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa83_classI_Rep5.RAW OV PXD007635_schuster batch9 OvCa83_classI_Rep6.raw OvCa83 A*02:01,A*11:01,B*51:01,B*55:01,C*03:03,C*15:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa83_classI_Rep6.RAW OV PXD007635_schuster batch9 OvCa84_classI_Rep1.raw OvCa84 A*02:01,B*07:02,B*44:02,C*07:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa84_classI_Rep1.RAW OV PXD007635_schuster batch9 OvCa84_classI_Rep2.raw OvCa84 A*02:01,B*07:02,B*44:02,C*07:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa84_classI_Rep2.RAW OV PXD007635_schuster batch9 OvCa84_classI_Rep3.raw OvCa84 A*02:01,B*07:02,B*44:02,C*07:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa84_classI_Rep3.RAW OV PXD007635_schuster batch9 OvCa84_classI_Rep4.raw OvCa84 A*02:01,B*07:02,B*44:02,C*07:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa84_classI_Rep4.RAW OV PXD007635_schuster batch9 OvCa84_classI_Rep5.raw OvCa84 A*02:01,B*07:02,B*44:02,C*07:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa84_classI_Rep5.RAW OV PXD007635_schuster batch9 OvCa99_classI_Rep1.raw OvCa99 A*02:01,A*24:02,B*13:02,B*40:01,C*03:04,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa99_classI_Rep1.raw OV PXD007635_schuster batch9 OvCa99_classI_Rep2.raw OvCa99 A*02:01,A*24:02,B*13:02,B*40:01,C*03:04,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa99_classI_Rep2.raw OV PXD007635_schuster batch9 OvCa99_classI_Rep3.raw OvCa99 A*02:01,A*24:02,B*13:02,B*40:01,C*03:04,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa99_classI_Rep3.raw OV PXD007635_schuster batch9 OvCa99_classI_Rep4.raw OvCa99 A*02:01,A*24:02,B*13:02,B*40:01,C*03:04,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa99_classI_Rep4.raw OV PXD007635_schuster batch10 OvCa99_classI_Rep5.raw OvCa99 A*02:01,A*24:02,B*13:02,B*40:01,C*03:04,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa99_classI_Rep5.raw OV PXD007635_schuster batch10 OvCa9_classI_Rep2.raw OvCa9 A*02:01,A*03:01,B*07:02,B*40:02,C*07:02,C*12:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa9_classI_Rep2.RAW OV PXD007635_schuster batch10 OvCa9_classI_Rep3.raw OvCa9 A*02:01,A*03:01,B*07:02,B*40:02,C*07:02,C*12:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa9_classI_Rep3.RAW OV PXD007635_schuster batch10 OvCa9_classI_Rep4_.raw OvCa9 A*02:01,A*03:01,B*07:02,B*40:02,C*07:02,C*12:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007635/OvCa9_classI_Rep4_.RAW OV PXD014062_HGSC IP_ovarian_1T_280217_1.raw HGSC1 A*02:05,A*02:01,B*50:01,B*44:02,C*06:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/IP_ovarian_1T_280217_1.raw OV PXD014062_HGSC IP_ovarian_1T_280217_2.raw HGSC1 A*02:05,A*02:01,B*50:01,B*44:02,C*06:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/IP_ovarian_1T_280217_2.raw OV PXD014062_HGSC IP_ovarian_2T_270217.raw HGSC2 A*02:01,A*03:01,B*35:01,B*27:02,C*04:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/IP_ovarian_2T_270217.raw OV PXD014062_HGSC IP_ovarian_2T_280217_2.raw HGSC2 A*02:01,A*03:01,B*35:01,B*27:02,C*04:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/IP_ovarian_2T_280217_2.raw OV PXD014062_HGSC IP_ovarian_3T_280217_1.raw HGSC3 A*11:01,A*02:01,B*07:02,B*15:01,C*07:02,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/IP_ovarian_3T_280217_1.raw OV PXD014062_HGSC IP_ovarian_3T_280217_2.raw HGSC3 A*11:01,A*02:01,B*07:02,B*15:01,C*07:02,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/IP_ovarian_3T_280217_2.raw OV PXD014062_HGSC 11326Vd1700_Ovarian_070918.raw HGSC4 A*11:01,A*01:01,B*40:01,B*27:05,C*03:04,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/11326Vd1700_Ovarian_070918.raw OV PXD014062_HGSC 682_16T_Ovarian_070918.raw HGSC5 A*02:01,A*03:01,B*15:01,B*56:01,C*03:03,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/682_16T_Ovarian_070918.raw OV PXD014062_HGSC 678_17T_Ovarian_070918.raw HGSC6 A*02:01,A*02:01,B*07:02,B*27:05,C*07:02,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/678_17T_Ovarian_070918.raw OV PXD014062_HGSC OVA606_140318_JL_2.raw OVA606 A*01:01,A*03:01,B*08:01,B*51:01,C*07:01,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/OVA606_140318_JL_2.raw OV PXD014062_HGSC OVA633_140318_JL_3.raw OVA633 A*02:01,A*24:02,B*44:03,B*57:01,C*04:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/OVA633_140318_JL_3.raw OV PXD014062_HGSC OVA642_140318_JL_4.raw OVA642 A*24:02,A*11:01,B*18:01,B*52:01,C*07:01,C*12:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD014062/OVA642_140318_JL_4.raw OV PXD006939_sternberg_cl 20170608_QEh1_LC1_ChCh_FAMA_SA_HLAIp_UWB1289_ctrl_1_R2.raw UWB1.289.ctrl A*03:01,A*68:01,B*07:02,B*07:02,C*03:32,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/12/PXD006939/20170608_QEh1_LC1_ChCh_FAMA_SA_HLAIp_UWB1289_ctrl_1_R2.raw OV PXD006939_sternberg_cl 20170608_QEh1_LC1_ChCh_FAMA_SA_HLAIp_UWB1289_ctrl_2_R2.raw UWB1.289.ctrl A*03:01,A*68:01,B*07:02,B*07:02,C*03:32,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/12/PXD006939/20170608_QEh1_LC1_ChCh_FAMA_SA_HLAIp_UWB1289_ctrl_2_R2.raw OV PXD006939_sternberg_cl 20170608_QEh1_LC1_ChCh_FAMA_SA_HLAIp_UWB1289_ctrl_3_R2.raw UWB1.289.ctrl A*03:01,A*68:01,B*07:02,B*07:02,C*03:32,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/12/PXD006939/20170608_QEh1_LC1_ChCh_FAMA_SA_HLAIp_UWB1289_ctrl_3_R2.raw OV PXD006939_sternberg_cl 20170608_QEh1_LC1_ChCh_FAMA_SA_HLAIp_UWB1289_ctrl_4_R2.raw UWB1.289.ctrl A*03:01,A*68:01,B*07:02,B*07:02,C*03:32,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/12/PXD006939/20170608_QEh1_LC1_ChCh_FAMA_SA_HLAIp_UWB1289_ctrl_4_R2.raw OV PXD006939_sternberg_cl 20170608_QEh1_LC1_ChCh_FAMA_SA_HLAIp_UWB1289_IFNg_1_R2.raw UWB1.289.IFNr A*03:01,A*68:01,B*07:02,B*07:02,C*03:32,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/12/PXD006939/20170608_QEh1_LC1_ChCh_FAMA_SA_HLAIp_UWB1289_IFNg_1_R2.raw OV PXD006939_sternberg_cl 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ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD015957/108T_EV3.raw SKCM PXD015957_PSMB8_PSMB9_immunoproteasome batch2 108T_EV2.raw 108T_EV A*01:01,A*11:01,B*08:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD015957/108T_EV2.raw SKCM PXD015957_PSMB8_PSMB9_immunoproteasome batch2 108T_EV1.raw 108T_EV A*01:01,A*11:01,B*08:01,B*55:01,C*03:03,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD015957/108T_EV1.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_1_R1.raw sternberg_ONVC A*03:01,A*26:01,B*38:01,B*40:01,C*03:04,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_1_R1.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_1_R2.raw sternberg_ONVC A*03:01,A*26:01,B*38:01,B*40:01,C*03:04,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_1_R2.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_2_R1.raw sternberg_ONVC A*03:01,A*26:01,B*38:01,B*40:01,C*03:04,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_2_R1.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_2_R2.raw sternberg_ONVC A*03:01,A*26:01,B*38:01,B*40:01,C*03:04,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_2_R2.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_3_R1.raw sternberg_ONVC A*03:01,A*26:01,B*38:01,B*40:01,C*03:04,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_3_R1.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_3_R2.raw sternberg_ONVC A*03:01,A*26:01,B*38:01,B*40:01,C*03:04,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_3_R2.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_4_R1.raw sternberg_ONVC A*03:01,A*26:01,B*38:01,B*40:01,C*03:04,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_4_R1.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_4_R2.raw sternberg_ONVC A*03:01,A*26:01,B*38:01,B*40:01,C*03:04,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170901_QEh1_LC1_ChC_SA_HLAIp_ONVC_ctrl_4_R2.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170903_QEh1_LC1_ChC_SA_HLAIp_OMM475_ctrl_1_R1.raw sternberg_OMM475 A*01:01,A*30:02,B*08:01,B*18:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170903_QEh1_LC1_ChC_SA_HLAIp_OMM475_ctrl_1_R1.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170903_QEh1_LC1_ChC_SA_HLAIp_OMM475_ctrl_2_R1.raw sternberg_OMM475 A*01:01,A*30:02,B*08:01,B*18:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170903_QEh1_LC1_ChC_SA_HLAIp_OMM475_ctrl_2_R1.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170903_QEh1_LC1_ChC_SA_HLAIp_OMM475_ctrl_3_R1.raw sternberg_OMM475 A*01:01,A*30:02,B*08:01,B*18:01,C*05:01,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170903_QEh1_LC1_ChC_SA_HLAIp_OMM475_ctrl_3_R1.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170913_QEh1_LC1_CHC_SA_HLAIp_OD5P_ctrl_1_R1.raw sternberg_OD5P A*01:01,A*23:01,B*07:02,B*15:01,C*12:03,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170913_QEh1_LC1_CHC_SA_HLAIp_OD5P_ctrl_1_R1.raw SKCM 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ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170913_QEh1_LC1_CHC_SA_HLAIp_OD5P_ctrl_3_R1.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170913_QEh1_LC1_CHC_SA_HLAIp_OD5P_ctrl_3_R2.raw sternberg_OD5P A*01:01,A*23:01,B*07:02,B*15:01,C*12:03,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170913_QEh1_LC1_CHC_SA_HLAIp_OD5P_ctrl_3_R2.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170913_QEh1_LC1_CHC_SA_HLAIp_OD5P_ctrl_4_R1.raw sternberg_OD5P A*01:01,A*23:01,B*07:02,B*15:01,C*12:03,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170913_QEh1_LC1_CHC_SA_HLAIp_OD5P_ctrl_4_R1.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 20170913_QEh1_LC1_CHC_SA_HLAIp_OD5P_ctrl_4_R2.raw sternberg_OD5P A*01:01,A*23:01,B*07:02,B*15:01,C*12:03,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD013649/20170913_QEh1_LC1_CHC_SA_HLAIp_OD5P_ctrl_4_R2.raw SKCM PXD013649_Bassani_Sternberg_2020_NC batch1 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A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_10348_YSA_MD55A3-IFN-1-500-HLA-I_1_311019.raw SKCM PXD020224_w_bumps QEP2_10348_YSA_MD55A3-IFN-2-500-HLA-I_1_311019.raw MD55A3_IFN A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_10348_YSA_MD55A3-IFN-2-500-HLA-I_1_311019.raw SKCM PXD020224_w_bumps QEP2_10348_YSA_MD55A3-NT1-HLA-I_1_311019.raw MD55A3 A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_10348_YSA_MD55A3-NT1-HLA-I_1_311019.raw SKCM PXD020224_w_bumps QEP2_10348_YSA_MD55A3-NT2-HLA-I_1_311019.raw MD55A3 A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_10348_YSA_MD55A3-NT2-HLA-I_1_311019.raw SKCM PXD020224_w_bumps QEP2_10348_YSA_MD55A3-W-1-HLA-I_1_311019.raw MD55A3_w_deplete A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_10348_YSA_MD55A3-W-1-HLA-I_1_311019.raw SKCM PXD020224_w_bumps QEP2_10348_YSA_MD55A3-W-2-HLA-I_1_311019.raw MD55A3_w_deplete A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_10348_YSA_MD55A3-W-2-HLA-I_1_311019.raw SKCM PXD020224_w_bumps QEP2_11290_YSA_412_1_060520.raw MD55A3 A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_11290_YSA_412_1_060520.raw SKCM PXD020224_w_bumps QEP2_11290_YSA_413_1_060520.raw MD55A3 A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_11290_YSA_413_1_060520.raw SKCM PXD020224_w_bumps QEP2_11290_YSA_414_1_060520.raw MD55A3_w_deplete A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_11290_YSA_414_1_060520.raw SKCM PXD020224_w_bumps QEP2_11290_YSA_415_1_060520.raw MD55A3_w_deplete A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_11290_YSA_415_1_060520.raw SKCM PXD020224_w_bumps QEP2_11290_YSA_416_1_060520.raw MD55A3_IFN A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_11290_YSA_416_1_060520.raw SKCM PXD020224_w_bumps QEP2_11290_YSA_417_1_060520.raw MD55A3_IFN A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/QEP2_11290_YSA_417_1_060520.raw SKCM PXD020224_w_bumps Seq48570_QE3.raw MD55A3 A*02:05,A*03:01,B*07:02,B*40:32,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD020224/Seq48570_QE3.raw SKCM MSV000084442_hlathena YE_20180622_SK_HLA_Melanoma_P006_2IPsx0p15g_wIFNy_01.raw wu_melanoma_p6_IFN A*02:01,A*03:01,B*27:05,B*47:01,C*01:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-006_IFN/YE_20180622_SK_HLA_Melanoma_P006_2IPsx0p15g_wIFNy_01.raw " SKCM MSV000084442_hlathena YE_20180622_SK_HLA_Melanoma_P006_2IPsx0p15g_wIFNy_02.raw wu_melanoma_p6_IFN A*02:01,A*03:01,B*27:05,B*47:01,C*01:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-006_IFN/YE_20180622_SK_HLA_Melanoma_P006_2IPsx0p15g_wIFNy_02.raw " SKCM MSV000084442_hlathena YE_20180622_SK_HLA_Melanoma_P006_2IPsx0p15g_01.raw wu_melanoma_p6 A*02:01,A*03:01,B*27:05,B*47:01,C*01:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-006/YE_20180622_SK_HLA_Melanoma_P006_2IPsx0p15g_01.raw " SKCM MSV000084442_hlathena YE_20180622_SK_HLA_Melanoma_P006_2IPsx0p15g_02.raw wu_melanoma_p6 A*02:01,A*03:01,B*27:05,B*47:01,C*01:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-006/YE_20180622_SK_HLA_Melanoma_P006_2IPsx0p15g_02.raw " SKCM MSV000084442_hlathena YY_20180828_SK_HLA_Pat5_Mel_withIFNy_3x7Mio_R1_01.raw wu_melanoma_p5_IFN A*01:01,A*01:01,B*38:01,B*56:01,C*01:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-005_IFN/YY_20180828_SK_HLA_Pat5_Mel_withIFNy_3x7Mio_R1_01.raw " SKCM MSV000084442_hlathena YY_20180828_SK_HLA_Pat5_Mel_withIFNy_3x7Mio_R1_02.raw wu_melanoma_p5_IFN A*01:01,A*01:01,B*38:01,B*56:01,C*01:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-005_IFN/YY_20180828_SK_HLA_Pat5_Mel_withIFNy_3x7Mio_R1_02.raw " SKCM MSV000084442_hlathena YY_20180828_SK_HLA_Pat5_Mel_3x5Mio_R1_01.raw wu_melanoma_p5 A*01:01,A*01:01,B*38:01,B*56:01,C*01:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-005/YY_20180828_SK_HLA_Pat5_Mel_3x5Mio_R1_01.raw " SKCM MSV000084442_hlathena YY_20180828_SK_HLA_Pat5_Mel_3x5Mio_R1_02.raw wu_melanoma_p5 A*01:01,A*01:01,B*38:01,B*56:01,C*01:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-005/YY_20180828_SK_HLA_Pat5_Mel_3x5Mio_R1_02.raw " SKCM MSV000084787_nuORF YG20190108_AA_MEL_sel_Pat2_IFNy_01.raw wu_melanoma_p2_IFN A*02:01,A*24:02,B*15:01,B*44:02,C*05:01,C*07:02 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel02_13240-002_20190108_MEL_sel_IFN/YG20190108_AA_MEL_sel_Pat2_IFNy_01.raw SKCM MSV000084787_nuORF YG20190108_AA_MEL_sel_Pat2_IFNy_02.raw wu_melanoma_p2_IFN A*02:01,A*24:02,B*15:01,B*44:02,C*05:01,C*07:02 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel02_13240-002_20190108_MEL_sel_IFN/YG20190108_AA_MEL_sel_Pat2_IFNy_02.raw SKCM MSV000084787_nuORF YG20190108_AA_MEL_sel_Pat2_01.raw wu_melanoma_p2 A*02:01,A*24:02,B*15:01,B*44:02,C*05:01,C*07:02 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel02_13240-002_20190108_MEL_sel/YG20190108_AA_MEL_sel_Pat2_01.raw SKCM MSV000084787_nuORF YG20190108_AA_MEL_sel_Pat2_02.raw wu_melanoma_p2 A*02:01,A*24:02,B*15:01,B*44:02,C*05:01,C*07:02 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel02_13240-002_20190108_MEL_sel/YG20190108_AA_MEL_sel_Pat2_02.raw SKCM MSV000084442_hlathena YJ20180306_SK_HLA_Melanoma_Pat2_2IPs_R1_01.raw wu_melanoma_p2 A*02:01,A*24:02,B*15:01,B*44:02,C*05:01,C*07:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-002/YJ20180306_SK_HLA_Melanoma_Pat2_2IPs_R1_01.raw " SKCM MSV000084442_hlathena YJ20180306_SK_HLA_Melanoma_Pat2_2IPs_R1_02.raw wu_melanoma_p2 A*02:01,A*24:02,B*15:01,B*44:02,C*05:01,C*07:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-002/YJ20180306_SK_HLA_Melanoma_Pat2_2IPs_R1_02.raw " SKCM MSV000084442_hlathena YJ20180306_SK_HLA_Melanoma_Pat2_2IPs_R2_01.raw wu_melanoma_p2 A*02:01,A*24:02,B*15:01,B*44:02,C*05:01,C*07:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-002/YJ20180306_SK_HLA_Melanoma_Pat2_2IPs_R2_01.raw " SKCM MSV000084442_hlathena YJ20180306_SK_HLA_Melanoma_Pat2_2IPs_R2_02.raw wu_melanoma_p2 A*02:01,A*24:02,B*15:01,B*44:02,C*05:01,C*07:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-002/YJ20180306_SK_HLA_Melanoma_Pat2_2IPs_R2_02.raw " SKCM MSV000084787_nuORF YY20190418_SK_HLA_Mel_Pat002_10x0p17g_pooled_01.raw wu_melanoma_p2 A*02:01,A*24:02,B*15:01,B*44:02,C*05:01,C*07:02 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel02_13240-002_20190419_10IPs/YY20190418_SK_HLA_Mel_Pat002_10x0p17g_pooled_01.raw SKCM MSV000084442_hlathena YE_20180726_SK_HLA_Mel_Pat15_6Mio_IFNy_01.raw wu_melanoma_p15_IFN A*02:01,A*02:02,B*13:02,B*40:02,C*02:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-015_IFN/YE_20180726_SK_HLA_Mel_Pat15_6Mio_IFNy_01.raw " SKCM MSV000084442_hlathena YE_20180726_SK_HLA_Mel_Pat15_6Mio_IFNy_02.raw wu_melanoma_p15_IFN A*02:01,A*02:02,B*13:02,B*40:02,C*02:02,C*06:02 DDA ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-015_IFN/YE_20180726_SK_HLA_Mel_Pat15_6Mio_IFNy_02.raw SKCM MSV000084442_hlathena GG20160930_CRH_HLA_Patient15_250mlnCells_01.raw wu_melanoma_p15 A*02:01,A*02:02,B*13:02,B*40:02,C*02:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-015/GG20160930_CRH_HLA_Patient15_250mlnCells_01.raw " SKCM MSV000084442_hlathena GG20160930_CRH_HLA_Patient15_250mlnCells_02.raw wu_melanoma_p15 A*02:01,A*02:02,B*13:02,B*40:02,C*02:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-015/GG20160930_CRH_HLA_Patient15_250mlnCells_02.raw " SKCM MSV000084442_hlathena YE_20180726_SK_HLA_Mel_Pat15_6Mio_01.raw wu_melanoma_p15 A*02:01,A*02:02,B*13:02,B*40:02,C*02:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-015/YE_20180726_SK_HLA_Mel_Pat15_6Mio_01.raw " SKCM MSV000084442_hlathena YE_20180726_SK_HLA_Mel_Pat15_6Mio_02.raw wu_melanoma_p15 A*02:01,A*02:02,B*13:02,B*40:02,C*02:02,C*06:02 DDA "ftp://massive.ucsd.edu/v02/MSV000084442/raw/RAW/Melanoma/MEL_13240-015/YE_20180726_SK_HLA_Mel_Pat15_6Mio_02.raw " SKCM MSV000084787_nuORF YJ20180308_SK_HLA_Melanoma_Pat11_withIFNy_3IPs_R1_01.raw wu_melanoma_p11_IFN A*66:01,A*01:03,B*08:01,B*08:01,C*07:01,C*07:01 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel11_13240-011_20180308_IFN/YJ20180308_SK_HLA_Melanoma_Pat11_withIFNy_3IPs_R1_01.raw SKCM MSV000084787_nuORF YJ20180308_SK_HLA_Melanoma_Pat11_withIFNy_3IPs_R1_02.raw wu_melanoma_p11_IFN A*66:01,A*01:03,B*08:01,B*08:01,C*07:01,C*07:01 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel11_13240-011_20180308_IFN/YJ20180308_SK_HLA_Melanoma_Pat11_withIFNy_3IPs_R1_02.raw SKCM MSV000084787_nuORF YJ20180308_SK_HLA_Melanoma_Pat11_withIFNy_3IPs_R2_01.raw wu_melanoma_p11_IFN A*66:01,A*01:03,B*08:01,B*08:01,C*07:01,C*07:01 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel11_13240-011_20180308_IFN/YJ20180308_SK_HLA_Melanoma_Pat11_withIFNy_3IPs_R2_01.raw SKCM MSV000084787_nuORF YJ20180308_SK_HLA_Melanoma_Pat11_withIFNy_3IPs_R2_02.raw wu_melanoma_p11_IFN A*66:01,A*01:03,B*08:01,B*08:01,C*07:01,C*07:01 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel11_13240-011_20180308_IFN/YJ20180308_SK_HLA_Melanoma_Pat11_withIFNy_3IPs_R2_02.raw SKCM MSV000084787_nuORF GG20160819_CRH_HLA_Patient11_08092016_discoveryTest.raw wu_melanoma_p11 A*66:01,A*01:03,B*08:01,B*08:01,C*07:01,C*07:01 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel11_13240-011_2018_2016/GG20160819_CRH_HLA_Patient11_08092016_discoveryTest.raw SKCM MSV000084787_nuORF GG20160819_CRH_HLA_Patient11_08182016_discoveryTest.raw wu_melanoma_p11 A*66:01,A*01:03,B*08:01,B*08:01,C*07:01,C*07:01 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel11_13240-011_2018_2016/GG20160819_CRH_HLA_Patient11_08182016_discoveryTest.raw SKCM MSV000084787_nuORF GG20160819_CRH_HLA_Patient11_olderSample_discoveryTest.raw wu_melanoma_p11 A*66:01,A*01:03,B*08:01,B*08:01,C*07:01,C*07:01 DDA ftp://massive.ucsd.edu/v02/MSV000084787/raw/RAW_patients/Melanoma_HLA/Mel11_13240-011_2018_2016/GG20160819_CRH_HLA_Patient11_olderSample_discoveryTest.raw SKCM MSV000084787_nuORF YJ20180308_SK_HLA_Melanoma_Pat11_3IPs_R1_01.raw wu_melanoma_p11 A*66:01,A*01:03,B*08:01,B*08:01,C*07:01,C*07:01 DDA 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A*02:01,A*03:01,B*07:02,B*18:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD034017/2022-07-20_Fusion_33209.raw SKCM phase2_PXD034017 2022-07-20_Fusion_33220.raw MaMel63a A*02:01,A*03:01,B*07:02,B*18:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD034017/2022-07-20_Fusion_33220.raw SKCM phase2_PXD034017 2022-07-20_Fusion_33221.raw MaMel63a A*02:01,A*03:01,B*07:02,B*18:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD034017/2022-07-20_Fusion_33221.raw SKCM phase2_PXD034017 2022-07-25_Fusion_33285.raw MaMel63a A*02:01,A*03:01,B*07:02,B*18:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD034017/2022-07-25_Fusion_33285.raw SKCM phase2_PXD034017 2022-07-25_Fusion_33286.raw MaMel63a A*02:01,A*03:01,B*07:02,B*18:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD034017/2022-07-25_Fusion_33286.raw SKCM phase2_PXD034017 2022-07-25_Fusion_33291.raw MaMel63a A*02:01,A*03:01,B*07:02,B*18:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD034017/2022-07-25_Fusion_33291.raw SKCM phase2_PXD034017 2022-07-25_Fusion_33292.raw MaMel63a A*02:01,A*03:01,B*07:02,B*18:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD034017/2022-07-25_Fusion_33292.raw SKCM phase2_PXD022949 NCI_3784Mel_Epitope_Rep1.raw NCI_3784Mel A*01:01,A*03:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD022949/NCI_3784Mel_Epitope_Rep1.raw SKCM phase2_PXD022949 NCI_3784Mel_Epitope_Rep2.raw NCI_3784Mel A*01:01,A*03:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD022949/NCI_3784Mel_Epitope_Rep2.raw SKCM phase2_PXD022949 NCI_3784Mel_Epitope_Rep3.raw NCI_3784Mel A*01:01,A*03:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD022949/NCI_3784Mel_Epitope_Rep3.raw SKCM phase2_PXD022949 NCI_3784Mel_Epitope_Rep4.raw NCI_3784Mel A*01:01,A*03:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD022949/NCI_3784Mel_Epitope_Rep4.raw SKCM phase2_PXD022949 NCI_3784Mel_Epitope_Rep5.raw NCI_3784Mel A*01:01,A*03:01,B*07:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD022949/NCI_3784Mel_Epitope_Rep5.raw SKCM phase2_PXD022949 NCI_3795Mel_Epitope_Rep1.raw NCI_3795Mel A*01:22,A*02:01,B*08:01,B*27:05,C*01:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD022949/NCI_3795Mel_Epitope_Rep1.raw SKCM phase2_PXD022949 NCI_3795Mel_Epitope_Rep2.raw NCI_3795Mel A*01:22,A*02:01,B*08:01,B*27:05,C*01:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD022949/NCI_3795Mel_Epitope_Rep2.raw SKCM phase2_PXD022949 NCI_3795Mel_Epitope_Rep3.raw NCI_3795Mel A*01:22,A*02:01,B*08:01,B*27:05,C*01:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD022949/NCI_3795Mel_Epitope_Rep3.raw SKCM phase2_PXD022949 NCI_3795Mel_Epitope_Rep4.raw NCI_3795Mel A*01:22,A*02:01,B*08:01,B*27:05,C*01:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD022949/NCI_3795Mel_Epitope_Rep4.raw SKCM phase2_PXD022949 NCI_3795Mel_Epitope_Rep5.raw NCI_3795Mel A*01:22,A*02:01,B*08:01,B*27:05,C*01:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD022949/NCI_3795Mel_Epitope_Rep5.raw SKCM phase2_PXD056367_JPST003393 MEL02_HLA_I_1.raw Mel02_BRAF_WT_CR A*11:01,A*02:06,B*48:01,B*15:01,C*08:01,C*04:01 DDA https://storage.jpostdb.org/JPST003393/MEL02_HLA_I_1.raw SKCM phase2_PXD056367_JPST003393 MEL02_HLA_I_2.raw Mel02_BRAF_WT_CR A*11:01,A*02:06,B*48:01,B*15:01,C*08:01,C*04:01 DDA https://storage.jpostdb.org/JPST003393/MEL02_HLA_I_2.raw SKCM phase2_PXD056367_JPST003393 MEL02_HLA_I_3.raw Mel02_BRAF_WT_CR A*11:01,A*02:06,B*48:01,B*15:01,C*08:01,C*04:01 DDA https://storage.jpostdb.org/JPST003393/MEL02_HLA_I_3.raw SKCM phase2_PXD056367_JPST003393 MEL03_HLA_I_1.raw Mel03_BRAF_WT_CR A*24:02,A*33:03,B*15:01,B*54:01,C*01:02,C*14:03 DDA https://storage.jpostdb.org/JPST003393/MEL03_HLA_I_1.raw SKCM phase2_PXD056367_JPST003393 MEL03_HLA_I_2.raw Mel03_BRAF_WT_CR A*24:02,A*33:03,B*15:01,B*54:01,C*01:02,C*14:03 DDA https://storage.jpostdb.org/JPST003393/MEL03_HLA_I_2.raw SKCM phase2_PXD056367_JPST003393 MEL03_HLA_I_3.raw Mel03_BRAF_WT_CR A*24:02,A*33:03,B*15:01,B*54:01,C*01:02,C*14:03 DDA https://storage.jpostdb.org/JPST003393/MEL03_HLA_I_3.raw SKCM phase2_PXD056367_JPST003393 MEL04_HLA_I_1.raw Mel04_BRAF_WT_PR A*11:01,A*31:01,B*15:01,B*56:01,C*04:01 DDA https://storage.jpostdb.org/JPST003393/MEL04_HLA_I_1.raw SKCM phase2_PXD056367_JPST003393 MEL04_HLA_I_2.raw Mel04_BRAF_WT_PR A*11:01,A*31:01,B*15:01,B*56:01,C*04:01 DDA "https://storage.jpostdb.org/JPST003393/MEL04_HLA_I_2.raw " SKCM phase2_PXD056367_JPST003393 MEL04_HLA_I_3.raw Mel04_BRAF_WT_PR A*11:01,A*31:01,B*15:01,B*56:01,C*04:01 DDA https://storage.jpostdb.org/JPST003393/MEL04_HLA_I_3.raw SKCM phase2_PXD056367_JPST003393 MELC3_HLA_I_1.raw MelC3_BRAF_V600E A*24:02,B*39:01,B*40:02,C*03:04,C*07:02 DDA https://storage.jpostdb.org/JPST003393/MELC3_HLA_I_1.raw SKCM phase2_PXD056367_JPST003393 MELC3_HLA_I_2.raw MelC3_BRAF_V600E A*24:02,B*39:01,B*40:02,C*03:04,C*07:02 DDA "https://storage.jpostdb.org/JPST003393/MELC3_HLA_I_2.raw " SKCM phase2_PXD056367_JPST003393 MELC3_HLA_I_3.raw MelC3_BRAF_V600E A*24:02,B*39:01,B*40:02,C*03:04,C*07:02 DDA https://storage.jpostdb.org/JPST003393/MELC3_HLA_I_3.raw SKCM phase2_PXD022020 A375-nzuh000402a19101xms1.raw A375 A*01:01,A*02:01,B*44:03,B*57:01,C*06:02,C*16:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD022020/A375-nzuh000402a19101xms1.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02128-HLAIp_R01.raw sternberg_T1185B A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02128-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02128-HLAIp_R02.raw sternberg_T1185B A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02128-HLAIp_R02.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02129-HLAIp_R01.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02129-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02129-HLAIp_R02.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02129-HLAIp_R02.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02130-HLAIp_R01.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02130-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02130-HLAIp_R02.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02130-HLAIp_R02.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02131-HLAIp_R01.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02131-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02131-HLAIp_R02.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02131-HLAIp_R02.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02132-HLAIp_R01.raw sternberg_T1185B A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02132-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02132-HLAIp_R02.raw sternberg_T1185B A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02132-HLAIp_R02.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02133-HLAIp_R01.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02133-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02133-HLAIp_R02.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02133-HLAIp_R02.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02134-HLAIp_R01.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02134-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02134-HLAIp_R02.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02134-HLAIp_R02.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02135-HLAIp_R01.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02135-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20221118_DIA_INT001-02135-HLAIp_R02.raw sternberg_T1185B_MG132_proteasome_inhibitor A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20221118_DIA_INT001-02135-HLAIp_R02.raw SKCM phase2_PXD043989_DIA 20231103_DIA_INT001-02982-HLAIp_R01.raw sternberg_T1185B A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20231103_DIA_INT001-02982-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20231103_DIA_INT001-02983-HLAIp_R01.raw sternberg_T1185B A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20231103_DIA_INT001-02983-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20231103_DIA_INT001-02984-HLAIp_R01.raw sternberg_T1185B A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20231103_DIA_INT001-02984-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20231103_DIA_INT001-02985-HLAIp_R01.raw sternberg_T1185B_IFNr A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20231103_DIA_INT001-02985-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20231103_DIA_INT001-02986-HLAIp_R01.raw sternberg_T1185B_IFNr A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20231103_DIA_INT001-02986-HLAIp_R01.raw SKCM phase2_PXD043989_DIA 20231103_DIA_INT001-02987-HLAIp_R01.raw sternberg_T1185B_IFNr A*02:01,A*68:01,B*13:02,B*40:01,C*03:04,C*06:02 DIA https://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD043989/20231103_DIA_INT001-02987-HLAIp_R01.raw BALL PXD009749 MHC_07H103_Rep1.raw 07H103 A*01:01,A*02:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009749/MHC_07H103_Rep1.raw BALL PXD009749 MHC_07H103_Rep2.raw 07H103 A*01:01,A*02:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009749/MHC_07H103_Rep2.raw BALL PXD009749 MHC_07H103_Rep3.raw 07H103 A*01:01,A*02:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009749/MHC_07H103_Rep3.raw BALL PXD009750 MHC_10H118_Rep1.raw 10H118 A*01:01,A*02:01,B*07:02,B*08:01,C*07:01,C*07:17 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009750/MHC_10H118_Rep1.raw BALL PXD009750 MHC_10H118_Rep2.raw 10H118 A*01:01,A*02:01,B*07:02,B*08:01,C*07:01,C*07:17 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009750/MHC_10H118_Rep2.raw BALL PXD009750 MHC_10H118_Rep3.raw 10H118 A*01:01,A*02:01,B*07:02,B*08:01,C*07:01,C*07:17 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009750/MHC_10H118_Rep3.raw BALL PXD009751 MHC_12H018_Rep1.raw 12H018 A*02:01,A*11:01,B*07:02,B*35:03,C*07:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009751/MHC_12H018_Rep1.raw BALL PXD009751 MHC_12H018_Rep2.raw 12H018 A*02:01,A*11:01,B*07:02,B*35:03,C*07:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009751/MHC_12H018_Rep2.raw BALL PXD009751 MHC_12H018_Rep3.raw 12H018 A*02:01,A*11:01,B*07:02,B*35:03,C*07:02,C*12:03 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009751/MHC_12H018_Rep3.raw BALL PXD009753 10H080_MAE_500M_180417_2.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009753/10H080_MAE_500M_180417_2.raw BALL PXD009753 10H080_MAE_500M_180417_3.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD009753/10H080_MAE_500M_180417_3.raw BALL PXD000394 20120726_EXQ1_MiBa_SA_SupB15-RT_mHLA-1.raw SupB15_RT_imatinib A*03:01,A*11:01,B*51:01,B*52:01,C*12:04,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120726_EXQ1_MiBa_SA_SupB15-RT_mHLA-1.raw BALL PXD000394 20120726_EXQ1_MiBa_SA_SupB15-RT_mHLA-3.raw SupB15_RT_imatinib A*03:01,A*11:01,B*51:01,B*52:01,C*12:04,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120726_EXQ1_MiBa_SA_SupB15-RT_mHLA-3.raw BALL PXD000394 20120726_EXQ1_MiBa_SA_SupB15-RT_mHLA-4.raw SupB15_RT_imatinib A*03:01,A*11:01,B*51:01,B*52:01,C*12:04,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120726_EXQ1_MiBa_SA_SupB15-RT_mHLA-4.raw BALL PXD000394 20120726_EXQ1_MiBa_SA_SupB15-RT_mHLA-5.raw SupB15_RT_imatinib A*03:01,A*11:01,B*51:01,B*52:01,C*12:04,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120726_EXQ1_MiBa_SA_SupB15-RT_mHLA-5.raw BALL PXD000394 20120726_EXQ1_MiBa_SA_SupB15-WT_mHLA-2.raw SupB15 A*03:01,A*11:01,B*51:01,B*52:01,C*12:04,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120726_EXQ1_MiBa_SA_SupB15-WT_mHLA-2.raw BALL PXD000394 20120726_EXQ1_MiBa_SA_SupB15-WT_mHLA-3.raw SupB15 A*03:01,A*11:01,B*51:01,B*52:01,C*12:04,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120726_EXQ1_MiBa_SA_SupB15-WT_mHLA-3.raw BALL PXD000394 20120726_EXQ1_MiBa_SA_SupB15-WT_mHLA-4.raw SupB15 A*03:01,A*11:01,B*51:01,B*52:01,C*12:04,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120726_EXQ1_MiBa_SA_SupB15-WT_mHLA-4.raw BALL PXD000394 20120726_EXQ1_MiBa_SA_SupB15-WT_mHLA-5.raw SupB15 A*03:01,A*11:01,B*51:01,B*52:01,C*12:04,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD000394/20120726_EXQ1_MiBa_SA_SupB15-WT_mHLA-5.raw BALL PXD007935 batch1 B-ALL_IP_fresh_100M_1.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_fresh_100M_1.raw BALL PXD007935 batch1 B-ALL_IP_fresh_100M_2.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_fresh_100M_2.raw BALL PXD007935 batch1 B-ALL_IP_fresh_100M_3.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_fresh_100M_3.raw BALL PXD007935 batch1 B-ALL_IP_frozen_100M_1.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_frozen_100M_1.raw BALL PXD007935 batch1 B-ALL_IP_frozen_100M_2.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_frozen_100M_2.raw BALL PXD007935 batch1 B-ALL_IP_frozen_100M_3.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_frozen_100M_3.raw BALL PXD007935 batch1 B-ALL_IP_frozen_20M_1.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_frozen_20M_1.raw BALL PXD007935 batch1 B-ALL_IP_frozen_20M_2.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_frozen_20M_2.raw BALL PXD007935 batch1 B-ALL_IP_frozen_20M_3.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_frozen_20M_3.raw BALL PXD007935 batch1 B-ALL_IP_frozen_2M_1.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_frozen_2M_1.raw BALL PXD007935 batch1 B-ALL_IP_frozen_2M_2.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_frozen_2M_2.raw BALL PXD007935 batch1 B-ALL_IP_frozen_2M_3.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_IP_frozen_2M_3.raw BALL PXD007935 batch1 B-ALL_MAE_fresh_100M_1.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_fresh_100M_1.raw BALL PXD007935 batch1 B-ALL_MAE_fresh_100M_2.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_fresh_100M_2.raw BALL PXD007935 batch1 B-ALL_MAE_fresh_100M_3.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_fresh_100M_3.raw BALL PXD007935 batch1 B-ALL_MAE_fresh_20M_1.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_fresh_20M_1.raw BALL PXD007935 batch1 B-ALL_MAE_fresh_20M_2.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_fresh_20M_2.raw BALL PXD007935 batch1 B-ALL_MAE_fresh_20M_3.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_fresh_20M_3.raw BALL PXD007935 batch1 B-ALL_MAE_fresh_2M_1.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_fresh_2M_1.raw BALL PXD007935 batch1 B-ALL_MAE_fresh_2M_2.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_fresh_2M_2.raw BALL PXD007935 batch2 B-ALL_MAE_fresh_2M_3.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_fresh_2M_3.raw BALL PXD007935 batch2 B-ALL_MAE_frozen_100M_1.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_frozen_100M_1.raw BALL PXD007935 batch2 B-ALL_MAE_frozen_100M_2.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_frozen_100M_2.raw BALL PXD007935 batch2 B-ALL_MAE_frozen_100M_3.raw 10H080 A*02:01,A*11:01,B*40:01,B*44:03,C*03:04,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD007935/B-ALL_MAE_frozen_100M_3.raw TALL PXD011723 batch1 FL605_IPP75_AN_Jurkat_C076_1BR_Even.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL605_IPP75_AN_Jurkat_C076_1BR_Even.raw TALL PXD011723 batch1 FL605_IPP75_AN_Jurkat_C076_1BR_Odd.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL605_IPP75_AN_Jurkat_C076_1BR_Odd.raw TALL PXD011723 batch1 FL605b_IPP75_AN_Jurkat_C076_1BR_Even.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL605b_IPP75_AN_Jurkat_C076_1BR_Even.raw TALL PXD011723 batch1 FL605b_IPP75_AN_Jurkat_C076_1BR_Odd.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL605b_IPP75_AN_Jurkat_C076_1BR_Odd.raw TALL PXD011723 batch1 FL607_IPP75_AN_Jurkat_Ig01_1BR_Even.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL607_IPP75_AN_Jurkat_Ig01_1BR_Even.raw TALL PXD011723 batch1 FL607_IPP75_AN_Jurkat_Ig01_1BR_Odd.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL607_IPP75_AN_Jurkat_Ig01_1BR_Odd.raw TALL PXD011723 batch1 FL607b_IPP75_AN_Jurkat_Ig01_1BR_Even.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL607b_IPP75_AN_Jurkat_Ig01_1BR_Even.raw TALL PXD011723 batch1 FL607b_IPP75_AN_Jurkat_Ig01_1BR_Odd.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL607b_IPP75_AN_Jurkat_Ig01_1BR_Odd.raw TALL PXD011723 batch1 FL609_IPP75_AN_Jurkat_Triton01_1BR_Even.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL609_IPP75_AN_Jurkat_Triton01_1BR_Even.raw TALL PXD011723 batch1 FL609_IPP75_AN_Jurkat_Triton01_1BR_Odd.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL609_IPP75_AN_Jurkat_Triton01_1BR_Odd.raw TALL PXD011723 batch1 FL609b_IPP75_AN_Jurkat_Triton01_1BR_Even.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL609b_IPP75_AN_Jurkat_Triton01_1BR_Even.raw TALL PXD011723 batch1 FL609b_IPP75_AN_Jurkat_Triton01_1BR_Odd.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL609b_IPP75_AN_Jurkat_Triton01_1BR_Odd.raw TALL PXD011723 batch2 FL610_IPP75_AN_Jurkat_NaD025_1BR_Even.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL610_IPP75_AN_Jurkat_NaD025_1BR_Even.raw TALL PXD011723 batch2 FL610_IPP75_AN_Jurkat_NaD025_1BR_Odd.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL610_IPP75_AN_Jurkat_NaD025_1BR_Odd.raw TALL PXD011723 batch2 FL610b_IPP75_AN_Jurkat_NaD025_1BR_Even.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL610b_IPP75_AN_Jurkat_NaD025_1BR_Even.raw TALL PXD011723 batch2 FL610b_IPP75_AN_Jurkat_NaD025_1BR_Odd.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL610b_IPP75_AN_Jurkat_NaD025_1BR_Odd.raw TALL PXD011723 batch2 FL613_IPP75_AN_Jurkat_C076_2BR_Even.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL613_IPP75_AN_Jurkat_C076_2BR_Even.raw TALL PXD011723 batch2 FL613_IPP75_AN_Jurkat_C076_2BR_Odd.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL613_IPP75_AN_Jurkat_C076_2BR_Odd.raw TALL PXD011723 batch2 FL613b_IPP75_AN_Jurkat_C076_2BR_Even.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL613b_IPP75_AN_Jurkat_C076_2BR_Even.raw TALL PXD011723 batch2 FL613b_IPP75_AN_Jurkat_C076_2BR_Odd.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL613b_IPP75_AN_Jurkat_C076_2BR_Odd.raw TALL PXD011723 batch2 FL615_IPP75_AN_Jurkat_Ig01_2BR_Even.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011723/FL615_IPP75_AN_Jurkat_Ig01_2BR_Even.raw TALL PXD011723 batch2 FL615_IPP75_AN_Jurkat_Ig01_2BR_Odd.raw Jurkat A*03:01,B*07:02,B*35:03,C*04:01,C*07:02 DDA 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UPN45_class_I_Rep2.raw UPN45 A*03:01,A*24:02,B*51:01,C*14:02,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN45_class_I_Rep2.raw CLL PXD024871 UPN45_class_I_Rep3.raw UPN45 A*03:01,A*24:02,B*51:01,C*14:02,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN45_class_I_Rep3.raw CLL PXD024871 UPN46_class_I_Rep1.raw UPN46 A*02:01,A*24:02,B*13:02,B*44:02,C*05:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN46_class_I_Rep1.raw CLL PXD024871 UPN46_class_I_Rep2.raw UPN46 A*02:01,A*24:02,B*13:02,B*44:02,C*05:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN46_class_I_Rep2.raw CLL PXD024871 UPN46_class_I_Rep3.raw UPN46 A*02:01,A*24:02,B*13:02,B*44:02,C*05:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN46_class_I_Rep3.raw CLL PXD024871 UPN47_class_I_Rep1.raw UPN47 A*02:01,A*26:01,B*07:02,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN47_class_I_Rep1.raw CLL PXD024871 UPN47_class_I_Rep2.raw UPN47 A*02:01,A*26:01,B*07:02,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN47_class_I_Rep2.raw CLL PXD024871 UPN47_class_I_Rep3.raw UPN47 A*02:01,A*26:01,B*07:02,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN47_class_I_Rep3.raw CLL PXD024871 UPN48_class_I_Rep1.raw UPN48 A*02:01,A*11:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN48_class_I_Rep1.raw CLL PXD024871 UPN48_class_I_Rep2.raw UPN48 A*02:01,A*11:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN48_class_I_Rep2.raw CLL PXD024871 UPN48_class_I_Rep3.raw UPN48 A*02:01,A*11:01,B*40:01,B*44:02,C*03:04,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN48_class_I_Rep3.raw CLL PXD024871 UPN49_class_I_Rep1.raw UPN49 A*02:01,B*08:01,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN49_class_I_Rep1.raw CLL PXD024871 UPN49_class_I_Rep2.raw UPN49 A*02:01,B*08:01,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN49_class_I_Rep2.raw CLL PXD024871 UPN49_class_I_Rep3.raw UPN49 A*02:01,B*08:01,B*40:01,C*03:04,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN49_class_I_Rep3.raw CLL PXD024871 UPN50_class_I_Rep1.raw UPN50 A*11:01,A*68:01,B*08:01,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN50_class_I_Rep1.raw CLL PXD024871 UPN50_class_I_Rep2.raw UPN50 A*11:01,A*68:01,B*08:01,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN50_class_I_Rep2.raw CLL PXD024871 UPN50_class_I_Rep3.raw UPN50 A*11:01,A*68:01,B*08:01,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN50_class_I_Rep3.raw CLL PXD024871 UPN51_class_I_Rep1.raw UPN51 A*01:01,A*24:02,B*15:01,B*40:01,C*02:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN51_class_I_Rep1.raw CLL PXD024871 UPN51_class_I_Rep2.raw UPN51 A*01:01,A*24:02,B*15:01,B*40:01,C*02:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN51_class_I_Rep2.raw CLL PXD024871 UPN51_class_I_Rep3.raw UPN51 A*01:01,A*24:02,B*15:01,B*40:01,C*02:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN51_class_I_Rep3.raw CLL PXD024871 UPN52_class_I_Rep1.raw UPN52 A*01:01,A*24:02,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN52_class_I_Rep1.raw CLL PXD024871 UPN52_class_I_Rep2.raw UPN52 A*01:01,A*24:02,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN52_class_I_Rep2.raw CLL PXD024871 UPN52_class_I_Rep3.raw UPN52 A*01:01,A*24:02,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN52_class_I_Rep3.raw CLL PXD024871 UPN52_class_I_Rep4.raw UPN52 A*01:01,A*24:02,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN52_class_I_Rep4.raw CLL PXD024871 UPN52_class_I_Rep5.raw UPN52 A*01:01,A*24:02,B*07:02,B*08:01,C*07:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD024871/UPN52_class_I_Rep5.raw CLL PXD010808 FL0014370.raw CLL002 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD010808/FL0014370.raw CLL PXD010808 FL0014374.raw CLL002 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD010808/FL0014374.raw CLL PXD010808 FL0014386.raw CLL003 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD010808/FL0014386.raw CLL PXD010808 FL0014390.raw CLL003 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD010808/FL0014390.raw CLL PXD025716 CLL_01_Rep_1.raw CLL_01 A*02:01,B*15:01,B*56:01,C*03:04,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_01_Rep_1.raw CLL PXD025716 CLL_01_Rep_2.raw CLL_01 A*02:01,B*15:01,B*56:01,C*03:04,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_01_Rep_2.raw CLL PXD025716 CLL_01_Rep_3.raw CLL_01 A*02:01,B*15:01,B*56:01,C*03:04,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_01_Rep_3.raw CLL PXD025716 CLL_02_Rep_1.raw CLL_02 A*02:01,B*07:02,B*18:01,C*03:04,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_02_Rep_1.raw CLL PXD025716 CLL_02_Rep_2.raw CLL_02 A*02:01,B*07:02,B*18:01,C*03:04,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_02_Rep_2.raw CLL PXD025716 CLL_02_Rep_3.raw CLL_02 A*02:01,B*07:02,B*18:01,C*03:04,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_02_Rep_3.raw CLL PXD025716 CLL_03_Rep_1.raw CLL_03 A*02:01,A*11:01,B*35:01,B*40:01,C*04:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_03_Rep_1.raw CLL PXD025716 CLL_03_Rep_2.raw CLL_03 A*02:01,A*11:01,B*35:01,B*40:01,C*04:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_03_Rep_2.raw CLL PXD025716 CLL_03_Rep_3.raw CLL_03 A*02:01,A*11:01,B*35:01,B*40:01,C*04:01,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_03_Rep_3.raw CLL PXD025716 CLL_04_Rep_1.raw CLL_04 A*02:01,A*68:01,B*38:01,B*51:01,C*12:03,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_04_Rep_1.raw CLL PXD025716 CLL_04_Rep_2.raw CLL_04 A*02:01,A*68:01,B*38:01,B*51:01,C*12:03,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_04_Rep_2.raw CLL PXD025716 CLL_04_Rep_3.raw CLL_04 A*02:01,A*68:01,B*38:01,B*51:01,C*12:03,C*14:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_04_Rep_3.raw CLL PXD025716 CLL_05_Rep_1.raw CLL_05 A*03:01,A*24:02,B*35:01,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_05_Rep_1.raw CLL PXD025716 CLL_05_Rep_2.raw CLL_05 A*03:01,A*24:02,B*35:01,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_05_Rep_2.raw CLL PXD025716 CLL_05_Rep_3.raw CLL_05 A*03:01,A*24:02,B*35:01,C*04:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_05_Rep_3.raw CLL PXD025716 CLL_06_Rep_1.raw CLL_06 A*02:01,A*24:02,B*07:02,B*44:02,C*07:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_06_Rep_1.raw CLL PXD025716 CLL_06_Rep_2.raw CLL_06 A*02:01,A*24:02,B*07:02,B*44:02,C*07:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_06_Rep_2.raw CLL PXD025716 CLL_06_Rep_3.raw CLL_06 A*02:01,A*24:02,B*07:02,B*44:02,C*07:02,C*05:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_06_Rep_3.raw CLL PXD025716 CLL_07_Rep_1.raw CLL_07 A*02:01,A*11:01,B*07:02,B*15:01,C*07:02,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_07_Rep_1.raw CLL PXD025716 CLL_07_Rep_2.raw CLL_07 A*02:01,A*11:01,B*07:02,B*15:01,C*07:02,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_07_Rep_2.raw CLL PXD025716 CLL_07_Rep_3.raw CLL_07 A*02:01,A*11:01,B*07:02,B*15:01,C*07:02,C*03:04 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_07_Rep_3.raw CLL PXD025716 CLL_08_Rep_1.raw CLL_08 A*02:01,A*24:02,B*07:02,B*13:02,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_08_Rep_1.raw CLL PXD025716 CLL_08_Rep_2.raw CLL_08 A*02:01,A*24:02,B*07:02,B*13:02,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_08_Rep_2.raw CLL PXD025716 CLL_08_Rep_3.raw CLL_08 A*02:01,A*24:02,B*07:02,B*13:02,C*06:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_08_Rep_3.raw CLL PXD025716 CLL_09_Rep_1.raw CLL_09 A*02:01,A*24:02,B*13:02,B*44:02,C*05:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_09_Rep_1.raw CLL PXD025716 CLL_09_Rep_2.raw CLL_09 A*02:01,A*24:02,B*13:02,B*44:02,C*05:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_09_Rep_2.raw CLL PXD025716 CLL_09_Rep_3.raw CLL_09 A*02:01,A*24:02,B*13:02,B*44:02,C*05:01,C*06:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_09_Rep_3.raw CLL PXD025716 CLL_10_Rep_1.raw CLL_10 A*01:01,A*24:02,B*15:01,B*40:01,C*02:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_10_Rep_1.raw CLL PXD025716 CLL_10_Rep_2.raw CLL_10 A*01:01,A*24:02,B*15:01,B*40:01,C*02:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_10_Rep_2.raw CLL PXD025716 CLL_10_Rep_3.raw CLL_10 A*01:01,A*24:02,B*15:01,B*40:01,C*02:02,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_10_Rep_3.raw CLL PXD025716 CLL_11_Rep_1.raw CLL_11 A*01:01,A*02:01,B*08:01,B*27:02,C*02:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_11_Rep_1.raw CLL PXD025716 CLL_11_Rep_2.raw CLL_11 A*01:01,A*02:01,B*08:01,B*27:02,C*02:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_11_Rep_2.raw CLL PXD025716 CLL_11_Rep_3.raw CLL_11 A*01:01,A*02:01,B*08:01,B*27:02,C*02:02,C*07:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_11_Rep_3.raw CLL PXD025716 CLL_12_Rep_1.raw CLL_12 A*01:01,A*24:02,B*07:02,B*08:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_12_Rep_1.raw CLL PXD025716 CLL_12_Rep_2.raw CLL_12 A*01:01,A*24:02,B*07:02,B*08:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_12_Rep_2.raw CLL PXD025716 CLL_12_Rep_3.raw CLL_12 A*01:01,A*24:02,B*07:02,B*08:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_12_Rep_3.raw CLL PXD025716 CLL_13_Rep_1.raw CLL_13 A*02:01,A*29:02,B*44:02,C*05:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_13_Rep_1.raw CLL PXD025716 CLL_13_Rep_2.raw CLL_13 A*02:01,A*29:02,B*44:02,C*05:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_13_Rep_2.raw CLL PXD025716 CLL_13_Rep_3.raw CLL_13 A*02:01,A*29:02,B*44:02,C*05:01,C*16:01 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_13_Rep_3.raw CLL PXD025716 CLL_14_Rep_1.raw CLL_14 A*01:01,A*24:02,B*08:01,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_14_Rep_1.raw CLL PXD025716 CLL_14_Rep_2.raw CLL_14 A*01:01,A*24:02,B*08:01,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_14_Rep_2.raw CLL PXD025716 CLL_14_Rep_3.raw CLL_14 A*01:01,A*24:02,B*08:01,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_14_Rep_3.raw CLL PXD025716 CLL_15_Rep_1.raw CLL_15 A*11:01,A*68:01,B*08:01,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_15_Rep_1.raw CLL PXD025716 CLL_15_Rep_2.raw CLL_15 A*11:01,A*68:01,B*08:01,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_15_Rep_2.raw CLL PXD025716 CLL_15_Rep_3.raw CLL_15 A*11:01,A*68:01,B*08:01,B*35:01,C*04:01,C*07:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD025716/CLL_15_Rep_3.raw CLL PXD038782_d 220315_NHG_TT_W_17%_CLL1022_thaw220318_LCV005-2_MSV035_Rep#1_Slot2-19_1_6662.d TOFIMS_amb_CLL1022 DDA CLL PXD038782_d 220315_NHG_TT_W_17%_CLL1022_thaw220318_LCV005-2_MSV035_Rep#2_Slot2-19_1_6663.d TOFIMS_amb_CLL1022 DDA CLL PXD038782_d 220315_NHG_TT_W_17%_CLL1022_thaw220318_LCV005-2_MSV035_Rep#3_Slot2-19_1_6664.d TOFIMS_amb_CLL1022 DDA CLL PXD038782_d 220331_NHG_malignant_CLL_02_W6-32_17%_DDA_Rep#1.d TOFIMS_CLL02 A*02:01,B*15:01,B*56:01,C*03:01,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD038782/220331_NHG_malignant_CLL_02_W6-32_17__DDA_Rep1.d.tar.gz CLL PXD038782_d 220331_NHG_malignant_CLL_02_W6-32_17%_DDA_Rep#2.d TOFIMS_CLL02 A*02:01,B*15:01,B*56:01,C*03:01,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD038782/220331_NHG_malignant_CLL_02_W6-32_17__DDA_Rep2.d.tar.gz CLL PXD038782_d 220331_NHG_malignant_CLL_02_W6-32_17%_DDA_Rep#3.d TOFIMS_CLL02 A*02:01,B*15:01,B*56:01,C*03:01,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD038782/220331_NHG_malignant_CLL_02_W6-32_17__DDA_Rep3.d.tar.gz CLL PXD038782_d 220331_NHG_TT_W_17%_CLL1012_thaw220331_LCV005-2_MSV035_Rep#1_Slot2-19_1_6955.d TOFIMS_amb_CLL1012 DDA CLL PXD038782_d 220331_NHG_TT_W_17%_CLL1012_thaw220331_LCV005-2_MSV035_Rep#2_Slot2-19_1_6956.d TOFIMS_amb_CLL1012 DDA CLL PXD038782_d 220331_NHG_TT_W_17%_CLL1012_thaw220331_LCV005-2_MSV035_Rep#3_Slot2-19_1_6957.d TOFIMS_amb_CLL1012 DDA CLL PXD038782_d 220404_NHG_malignant_CLL_01_W6-32_17%_DDA_Rep#1.d TOFIMS_CLL01 A*01:01,A*02:01,B*08:01,B*27:01,C*07:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD038782/220404_NHG_malignant_CLL_01_W6-32_17__DDA_Rep1.d.tar.gz CLL PXD038782_d 220404_NHG_malignant_CLL_01_W6-32_17%_DDA_Rep#2.d TOFIMS_CLL01 A*01:01,A*02:01,B*08:01,B*27:01,C*07:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD038782/220404_NHG_malignant_CLL_01_W6-32_17__DDA_Rep2.d.tar.gz CLL PXD038782_d 220404_NHG_malignant_CLL_01_W6-32_17%_DDA_Rep#3.d TOFIMS_CLL01 A*01:01,A*02:01,B*08:01,B*27:01,C*07:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD038782/220404_NHG_malignant_CLL_01_W6-32_17__DDA_Rep3.d.tar.gz CLL PXD038782_d 220404_NHG_TT_W_17%_CLL1015_thaw220404_LCV005-2_MSV035_Rep#1_Slot2-30_1_7018.d TOFIMS_amb_CLL1015 DDA CLL PXD038782_d 220404_NHG_TT_W_17%_CLL1015_thaw220404_LCV005-2_MSV035_Rep#2_Slot2-30_1_7019.d TOFIMS_amb_CLL1015 DDA CLL PXD038782_d 220404_NHG_TT_W_17%_CLL1015_thaw220404_LCV005-2_MSV035_Rep#3_Slot2-30_1_7020.d TOFIMS_amb_CLL1015 DDA CLL PXD038782_d 220404_NHG_TT_W_17%_CLL1020_thaw220404_LCV005-2_MSV035_Rep#1_Slot2-48_1_6997.d TOFIMS_amb_CLL1020 DDA CLL PXD038782_d 220404_NHG_TT_W_17%_CLL1020_thaw220404_LCV005-2_MSV035_Rep#2_Slot2-48_1_6998.d TOFIMS_amb_CLL1020 DDA CLL PXD038782_d 220404_NHG_TT_W_17%_CLL1020_thaw220404_LCV005-2_MSV035_Rep#3_Slot2-48_1_6999.d TOFIMS_amb_CLL1020 DDA CLL PXD038782_d 230706_NHG_timsTOF_Revision_CLL4004_W_20%_CLL_thaw230707_LCV005-2_MSV035_Rep#1_Slot1-37_1_11762.d TOFIMS_amb_CLL4004 DDA CLL PXD038782_d 230706_NHG_timsTOF_Revision_CLL4004_W_20%_CLL_thaw230707_LCV005-2_MSV035_Rep#2_Slot1-37_1_11763.d TOFIMS_amb_CLL4004 DDA CLL PXD038782_d 230706_NHG_timsTOF_Revision_CLL4004_W_20%_CLL_thaw230707_LCV005-2_MSV035_Rep#3_Slot1-37_1_11764.d TOFIMS_amb_CLL4004 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1016_W_20%_CLL_thaw230713_LCV005-2_MSV035_Rep#1_Slot1-19_1_11898.d TOFIMS_amb_CLL1016 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1016_W_20%_CLL_thaw230713_LCV005-2_MSV035_Rep#2_Slot1-19_1_11899.d TOFIMS_amb_CLL1016 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1016_W_20%_CLL_thaw230713_LCV005-2_MSV035_Rep#3_Slot1-19_1_11900.d TOFIMS_amb_CLL1016 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1017_W_20%_CLL_thaw230714_LCV005-2_MSV035_Rep#1_Slot1-21_1_11912.d TOFIMS_amb_CLL1017 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1017_W_20%_CLL_thaw230714_LCV005-2_MSV035_Rep#2_Slot1-21_1_11913.d TOFIMS_amb_CLL1017 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1017_W_20%_CLL_thaw230714_LCV005-2_MSV035_Rep#3_Slot1-21_1_11914.d TOFIMS_amb_CLL1017 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1018_W_20%_CLL_thaw230713_LCV005-2_MSV035_Rep#1_Slot1-20_1_11905.d TOFIMS_amb_CLL1018 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1018_W_20%_CLL_thaw230713_LCV005-2_MSV035_Rep#2_Slot1-20_1_11906.d TOFIMS_amb_CLL1018 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1018_W_20%_CLL_thaw230713_LCV005-2_MSV035_Rep#3_Slot1-20_1_11907.d TOFIMS_amb_CLL1018 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1019_W_20%_CLL_thaw230714_LCV005-2_MSV035_Rep#1_Slot1-22_1_11919.d TOFIMS_amb_CLL1019 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1019_W_20%_CLL_thaw230714_LCV005-2_MSV035_Rep#2_Slot1-22_1_11920.d TOFIMS_amb_CLL1019 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLL1019_W_20%_CLL_thaw230714_LCV005-2_MSV035_Rep#3_Slot1-22_1_11921.d TOFIMS_amb_CLL1019 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLLXS15-0101_W_20%_CLL_thaw230714_LCV005-2_MSV035_Rep#1_Slot1-23_1_11926.d TOFIMS_amb_CLLXS15_0101 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLLXS15-0101_W_20%_CLL_thaw230714_LCV005-2_MSV035_Rep#2_Slot1-23_1_11927.d TOFIMS_amb_CLLXS15_0101 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLLXS15-0101_W_20%_CLL_thaw230714_LCV005-2_MSV035_Rep#3_Slot1-23_1_11928.d TOFIMS_amb_CLLXS15_0101 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLLXS15-0129_W_20%_CLL_thaw230716_LCV005-2_MSV035_Rep#1_Slot1-25_1_11962.d TOFIMS_amb_CLLXS15_0129 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLLXS15-0129_W_20%_CLL_thaw230716_LCV005-2_MSV035_Rep#2_Slot1-25_1_11963.d TOFIMS_amb_CLLXS15_0129 DDA CLL PXD038782_d 230713_NHG_timsTOF_Revision_CLLXS15-0129_W_20%_CLL_thaw230716_LCV005-2_MSV035_Rep#3_Slot1-25_1_11964.d TOFIMS_amb_CLLXS15_0129 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL0101_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#1_Slot1-24_1_11994.d TOFIMS_amb_CLL0101 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL0101_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#2_Slot1-24_1_11995.d TOFIMS_amb_CLL0101 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL0101_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#3_Slot1-24_1_11996.d TOFIMS_amb_CLL0101 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1006_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#1_Slot1-20_1_12022.d TOFIMS_amb_CLL1006 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1006_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#2_Slot1-20_1_12023.d TOFIMS_amb_CLL1006 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1006_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#3_Slot1-20_1_12024.d TOFIMS_amb_CLL1006 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1009_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#1_Slot1-37_1_12036.d TOFIMS_amb_CLL1009 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1009_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#2_Slot1-37_1_12037.d TOFIMS_amb_CLL1009 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1009_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#3_Slot1-37_1_12038.d TOFIMS_amb_CLL1009 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1011_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#1_Slot1-9_1_12043.d TOFIMS_amb_CLL1011 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1011_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#2_Slot1-9_1_12044.d TOFIMS_amb_CLL1011 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1011_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#3_Slot1-9_1_12045.d TOFIMS_amb_CLL1011 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1028_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#1_Slot1-23_1_12001.d TOFIMS_amb_CLL1028 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1028_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#2_Slot1-23_1_12002.d TOFIMS_amb_CLL1028 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1028_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#3_Slot1-23_1_12003.d TOFIMS_amb_CLL1028 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1029_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#1_Slot1-27_1_11987.d TOFIMS_amb_CLL1029 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1029_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#2_Slot1-27_1_11988.d TOFIMS_amb_CLL1029 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL1029_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#3_Slot1-27_1_11989.d TOFIMS_amb_CLL1029 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL5001_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#1_Slot1-26_1_11980.d TOFIMS_amb_CLL5001 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL5001_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#2_Slot1-26_1_11981.d TOFIMS_amb_CLL5001 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL5001_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#3_Slot1-26_1_11982.d TOFIMS_amb_CLL5001 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLLXS15-0128_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#1_Slot1-25_1_11973.d TOFIMS_amb_CLLXS15_0128 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLLXS15-0128_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#2_Slot1-25_1_11974.d TOFIMS_amb_CLLXS15_0128 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLLXS15-0128_W_20%_CLL_thaw230717_LCV005-2_MSV035_Rep#3_Slot1-25_1_11975.d TOFIMS_amb_CLLXS15_0128 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL-XS15-1023_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#1_Slot1-21_1_12015.d TOFIMS_amb_CLLXS15_1023 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL-XS15-1023_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#2_Slot1-21_1_12016.d TOFIMS_amb_CLLXS15_1023 DDA CLL PXD038782_d 230717_NHG_timsTOF_Revision_CLL-XS15-1023_W_20%_CLL_thaw230718_LCV005-2_MSV035_Rep#3_Slot1-21_1_12017.d TOFIMS_amb_CLLXS15_1023 DDA CLL PXD038782_raw 220329_NHG_malignant_CLL_01_W6-32_17__orbitrap_DDA_Rep1.raw TOFIMS_CLL01 A*01:01,A*02:01,B*08:01,B*27:01,C*07:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD038782/220329_NHG_malignant_CLL_01_W6-32_17__orbitrap_DDA_Rep1.raw CLL PXD038782_raw 220329_NHG_malignant_CLL_01_W6-32_17__orbitrap_DDA_Rep2.raw TOFIMS_CLL01 A*01:01,A*02:01,B*08:01,B*27:01,C*07:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD038782/220329_NHG_malignant_CLL_01_W6-32_17__orbitrap_DDA_Rep2.raw CLL PXD038782_raw 220329_NHG_malignant_CLL_01_W6-32_17__orbitrap_DDA_Rep3.raw TOFIMS_CLL01 A*01:01,A*02:01,B*08:01,B*27:01,C*07:01,C*02:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD038782/220329_NHG_malignant_CLL_01_W6-32_17__orbitrap_DDA_Rep3.raw CLL PXD038782_raw 220329_NHG_malignant_CLL_02_W6-32_17__orbitrap_DDA_Rep1.raw TOFIMS_CLL02 A*02:01,B*15:01,B*56:01,C*03:01,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD038782/220329_NHG_malignant_CLL_02_W6-32_17__orbitrap_DDA_Rep1.raw CLL PXD038782_raw 220329_NHG_malignant_CLL_02_W6-32_17__orbitrap_DDA_Rep2.raw TOFIMS_CLL02 A*02:01,B*15:01,B*56:01,C*03:01,C*01:02 DDA ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD038782/220329_NHG_malignant_CLL_02_W6-32_17__orbitrap_DDA_Rep2.raw CLL PXD038782_raw 220329_NHG_malignant_CLL_02_W6-32_17__orbitrap_DDA_Rep3.raw TOFIMS_CLL02 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