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         <diaUseRnnCcsModel>False</diaUseRnnCcsModel>
         <diaUseCharge2Fragments>True</diaUseCharge2Fragments>
         <diaUseWaterLosses>False</diaUseWaterLosses>
         <diaUseAmmoniaLosses>False</diaUseAmmoniaLosses>
         <diaUseRtFeaturesInMlScoring>True</diaUseRtFeaturesInMlScoring>
         <diaCountSamples>False</diaCountSamples>
         <diaCountSamplesSecondScore>True</diaCountSamplesSecondScore>
         <diaCountSamplesUpperPercentile>50</diaCountSamplesUpperPercentile>
         <diaCountSamplesNumLowerPercentiles>5</diaCountSamplesNumLowerPercentiles>
         <diaSeparateCalibrationPerLib>False</diaSeparateCalibrationPerLib>
         <diaReadDecoysFromFile>False</diaReadDecoysFromFile>
         <diaFragCorrelationThreshold>0.3</diaFragCorrelationThreshold>
         <diaFragIntensityThreshold1>0</diaFragIntensityThreshold1>
         <diaFragIntensityThreshold2>0</diaFragIntensityThreshold2>
         <diaFragIntensityThreshold3>0</diaFragIntensityThreshold3>
         <diaFragIntensityThreshold4>0</diaFragIntensityThreshold4>
         <diaUseFragCorrelationForRescoring>False</diaUseFragCorrelationForRescoring>
         <diaDoNotUsePredictedDecoys>True</diaDoNotUsePredictedDecoys>
      </parameterGroup>
   </parameterGroups>
   <msmsParamsArray>
      <msmsParams>
         <Name>FTMS</Name>
         <MatchTolerance>20</MatchTolerance>
         <MatchToleranceInPpm>True</MatchToleranceInPpm>
         <DeisotopeTolerance>7</DeisotopeTolerance>
         <DeisotopeToleranceInPpm>True</DeisotopeToleranceInPpm>
         <DeNovoTolerance>25</DeNovoTolerance>
         <DeNovoToleranceInPpm>True</DeNovoToleranceInPpm>
         <Deisotope>True</Deisotope>
         <Topx>12</Topx>
         <TopxInterval>100</TopxInterval>
         <HigherCharges>True</HigherCharges>
         <IncludeWater>True</IncludeWater>
         <IncludeAmmonia>True</IncludeAmmonia>
         <IncludeWaterCross>False</IncludeWaterCross>
         <IncludeAmmoniaCross>False</IncludeAmmoniaCross>
         <DependentLosses>True</DependentLosses>
         <Recalibration>False</Recalibration>
      </msmsParams>
      <msmsParams>
         <Name>ITMS</Name>
         <MatchTolerance>0.5</MatchTolerance>
         <MatchToleranceInPpm>False</MatchToleranceInPpm>
         <DeisotopeTolerance>0.15</DeisotopeTolerance>
         <DeisotopeToleranceInPpm>False</DeisotopeToleranceInPpm>
         <DeNovoTolerance>0.5</DeNovoTolerance>
         <DeNovoToleranceInPpm>False</DeNovoToleranceInPpm>
         <Deisotope>False</Deisotope>
         <Topx>8</Topx>
         <TopxInterval>100</TopxInterval>
         <HigherCharges>True</HigherCharges>
         <IncludeWater>True</IncludeWater>
         <IncludeAmmonia>True</IncludeAmmonia>
         <IncludeWaterCross>False</IncludeWaterCross>
         <IncludeAmmoniaCross>False</IncludeAmmoniaCross>
         <DependentLosses>True</DependentLosses>
         <Recalibration>False</Recalibration>
      </msmsParams>
      <msmsParams>
         <Name>TOF</Name>
         <MatchTolerance>25</MatchTolerance>
         <MatchToleranceInPpm>True</MatchToleranceInPpm>
         <DeisotopeTolerance>0.01</DeisotopeTolerance>
         <DeisotopeToleranceInPpm>False</DeisotopeToleranceInPpm>
         <DeNovoTolerance>25</DeNovoTolerance>
         <DeNovoToleranceInPpm>True</DeNovoToleranceInPpm>
         <Deisotope>True</Deisotope>
         <Topx>16</Topx>
         <TopxInterval>100</TopxInterval>
         <HigherCharges>True</HigherCharges>
         <IncludeWater>True</IncludeWater>
         <IncludeAmmonia>True</IncludeAmmonia>
         <IncludeWaterCross>False</IncludeWaterCross>
         <IncludeAmmoniaCross>False</IncludeAmmoniaCross>
         <DependentLosses>True</DependentLosses>
         <Recalibration>False</Recalibration>
      </msmsParams>
      <msmsParams>
         <Name>ASTRAL</Name>
         <MatchTolerance>25</MatchTolerance>
         <MatchToleranceInPpm>True</MatchToleranceInPpm>
         <DeisotopeTolerance>0.01</DeisotopeTolerance>
         <DeisotopeToleranceInPpm>False</DeisotopeToleranceInPpm>
         <DeNovoTolerance>25</DeNovoTolerance>
         <DeNovoToleranceInPpm>True</DeNovoToleranceInPpm>
         <Deisotope>True</Deisotope>
         <Topx>16</Topx>
         <TopxInterval>100</TopxInterval>
         <HigherCharges>True</HigherCharges>
         <IncludeWater>True</IncludeWater>
         <IncludeAmmonia>True</IncludeAmmonia>
         <IncludeWaterCross>False</IncludeWaterCross>
         <IncludeAmmoniaCross>False</IncludeAmmoniaCross>
         <DependentLosses>True</DependentLosses>
         <Recalibration>False</Recalibration>
      </msmsParams>
      <msmsParams>
         <Name>UNKNOWN</Name>
         <MatchTolerance>20</MatchTolerance>
         <MatchToleranceInPpm>True</MatchToleranceInPpm>
         <DeisotopeTolerance>7</DeisotopeTolerance>
         <DeisotopeToleranceInPpm>True</DeisotopeToleranceInPpm>
         <DeNovoTolerance>25</DeNovoTolerance>
         <DeNovoToleranceInPpm>True</DeNovoToleranceInPpm>
         <Deisotope>True</Deisotope>
         <Topx>12</Topx>
         <TopxInterval>100</TopxInterval>
         <HigherCharges>True</HigherCharges>
         <IncludeWater>True</IncludeWater>
         <IncludeAmmonia>True</IncludeAmmonia>
         <IncludeWaterCross>False</IncludeWaterCross>
         <IncludeAmmoniaCross>False</IncludeAmmoniaCross>
         <DependentLosses>True</DependentLosses>
         <Recalibration>False</Recalibration>
      </msmsParams>
   </msmsParamsArray>
   <fragmentationParamsArray>
      <fragmentationParams>
         <Name>CID</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>HCD</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>ETD</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>PQD</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>ETHCD</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>ETCID</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>UVPD</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
      <fragmentationParams>
         <Name>Unknown</Name>
         <UseIntensityPrediction>False</UseIntensityPrediction>
         <UseSequenceBasedModifier>False</UseSequenceBasedModifier>
         <InternalFragments>False</InternalFragments>
         <InternalFragmentWeight>1</InternalFragmentWeight>
         <InternalFragmentAas>KRH</InternalFragmentAas>
      </fragmentationParams>
   </fragmentationParamsArray>
</MaxQuantParams>
