erv median_tumor mean_normal logfc n_sample AluYf1_dup91:AluYf1:Alu:SINE 1.0014680305828565 0.2721315892790703 1.87974002661968 412.0 AluJo_dup72535:AluJo:Alu:SINE 1.5036034351545786 0.2207392627405336 2.768008947772558 412.0 AluSz6_dup36815:AluSz6:Alu:SINE 1.587154276705053 0.0012375329650786 10.324759698599074 412.0 MLT1K_dup15840:MLT1K:ERVL-MaLR:LTR 1.0553047020365955 0.3327659589692898 1.6650798513095133 412.0 AluY_dup96259:AluY:Alu:SINE 2.114374809547354 0.4083043413928744 2.372514329513396 412.0 MER34A_dup1023:MER34A:ERV1:LTR 1.4021141283249654 0.0170586342162612 6.360957832166492 412.0 L1M3_dup291:L1M3:L1:LINE 1.2336049119338997 0.3648644439828962 1.7574479425162937 412.0 AluJb_dup110334:AluJb:Alu:SINE 1.3168344446832525 0.0376756510949624 5.127297723887363 412.0 AluSx_dup91179:AluSx:Alu:SINE 18.088012043241022 0.0045621159872568 11.953043111116209 412.0 AluSx1_dup105873:AluSx1:Alu:SINE 1.242616401364279 0.0188810566591458 6.040297685585462 412.0 AluJb_dup107864:AluJb:Alu:SINE 6.268926213472384 0.0002278324850216 14.747957263222752 412.0 Charlie9_dup289:Charlie9:hAT-Charlie:DNA 1.1393580051185443 0.217036306128723 2.3922128329499155 412.0 AluSp_dup17171:AluSp:Alu:SINE 4.097859833617942 0.2092895351215914 4.291298557141892 412.0 AluSz_dup93694:AluSz:Alu:SINE 4.524979997511522 0.1659909287906949 4.768735107586191 412.0 L1PA3_dup1321:L1PA3:L1:LINE 2.354898117276073 0.2637255971055219 3.1585551336381337 412.0 AluSp_dup17164:AluSp:Alu:SINE 1.029662336824848 0.1877517114460719 2.4552733398049984 412.0 AluJr_dup72800:AluJr:Alu:SINE 4.322947799615568 0.1893768988027336 4.512683156464005 412.0 AluY_dup87815:AluY:Alu:SINE 1.0835071329703625 0.3015034731004288 1.8454621249178431 412.0 AluJr_dup30890:AluJr:Alu:SINE 1.1587436034697902 0.4309280836060434 1.4270423477285874 412.0 L1MC1_dup2138:L1MC1:L1:LINE 1.366176465802948 0.2278259033593264 2.5841401521046348 412.0 AluSx1_dup66787:AluSx1:Alu:SINE 1.102388908275297 0.4606853465061363 1.2587796630053298 412.0 LTR8_dup2971:LTR8:ERV1:LTR 3.5254766275230622 0.2447948664736123 3.848173107047832 412.0 AluSx_dup100421:AluSx:Alu:SINE 1.7051220081498617 0.0059828671783624 8.154822223039238 412.0 AluSx1_dup108546:AluSx1:Alu:SINE 1.889137087657936 0.0026454172374457 9.480016397836524 412.0 AluSp_dup12528:AluSp:Alu:SINE 1.2590083505270568 0.0295741133308953 5.411809126312854 412.0 AluSp_dup1142:AluSp:Alu:SINE 1.6041907443419612 0.2089834518128584 2.940385080593694 412.0 Tigger14a_dup108:Tigger14a:TcMar-Tigger:DNA 1.9604086201385509 0.0078075927274636 7.9720608816056755 412.0 LTR88b_dup1331:LTR88b:Gypsy:LTR 1.721723560421451 0.0198811332927147 6.436309714481688 412.0 L1ME1_dup14741:L1ME1:L1:LINE 1.7347409249778627 0.2188578600898351 2.9866541163260325 412.0 OldhAT1_dup3754:OldhAT1:hAT-Ac:DNA 3.324749033577806 0.229716003740126 3.855322169579443 412.0 L1MC1_dup2137:L1MC1:L1:LINE 2.5616184906748103 0.3234029913481031 2.98565069855408 412.0 AluSq_dup8757:AluSq:Alu:SINE 1.0188031056870093 0.3783450592878827 1.429100752019774 411.0 HAL1b_dup4448:HAL1b:L1:LINE 1.1499116082816545 0.3981541463253199 1.5301239811081562 411.0 FLAM_A_dup12514:FLAM_A:Alu:SINE 2.2991235404226997 0.3935794143678104 2.5463573199115217 411.0 AluSc8_dup3929:AluSc8:Alu:SINE 1.080411960301745 0.4240188533349215 1.3493811973656566 411.0 L1MB7_dup20631:L1MB7:L1:LINE 1.1095711634182468 0.4737066641873145 1.2279363258839688 411.0 L1M1_dup4691:L1M1:L1:LINE 1.1088394770649246 0.3828187301123126 1.534317203362829 411.0 AluJb_dup56968:AluJb:Alu:SINE 1.3509966356980856 0.0002169198745066 12.60457422073283 411.0 AluSx3_dup26730:AluSx3:Alu:SINE 1.0680530885827513 0.3549904838271571 1.58913110316667 411.0 L1MD2_dup3350:L1MD2:L1:LINE 1.3596932885873492 0.265229905058228 2.3579658980253906 411.0 AluSz_dup102163:AluSz:Alu:SINE 1.4582333269186925 0.0002179491274605 12.707942530369788 411.0 LTR2_dup419:LTR2:ERV1:LTR 1.725974063405204 0.4981646979306208 1.7927160901749106 411.0 SVA_D_dup1229:SVA_D:SVA:Retroposon 1.1350516513551336 0.476847412502663 1.2511583560077892 411.0 L1PA6_dup546:L1PA6:L1:LINE 2.204018698077101 0.2927699401366612 2.912297124195068 411.0 AluJr_dup44423:AluJr:Alu:SINE 1.307136857301863 0.1951206886456881 2.7439715391745128 411.0 AluJb_dup52492:AluJb:Alu:SINE 1.1175835783501291 0.008473065280623 7.043283027543887 411.0 AluSq_dup1109:AluSq:Alu:SINE 1.400778429357914 0.0170353827791468 6.361550598056234 411.0 AluJb_dup73373:AluJb:Alu:SINE 1.449677785642375 0.000524734054382 11.431858231523131 410.0 AluSq2_dup55936:AluSq2:Alu:SINE 1.104372945364611 0.4463713786081964 1.3069110212625872 410.0 AluSx_dup93726:AluSx:Alu:SINE 1.0139751545573483 0.1986652734758503 2.3516106845562588 410.0 AluSx_dup71151:AluSx:Alu:SINE 1.2508094591961196 0.4573538105707593 1.4514794582925306 410.0 AluSp_dup11449:AluSp:Alu:SINE 1.4651103545424644 0.46236865931507 1.663893818700959 410.0 Charlie4a_dup1193:Charlie4a:hAT-Charlie:DNA 1.6629680921853929 0.461154855418863 1.850437294587871 410.0 AluJo_dup70939:AluJo:Alu:SINE 1.599918516535651 0.002178492838753 9.520452344771074 410.0 L1PA2_dup219:L1PA2:L1:LINE 1.2972111219762317 0.4502185352130829 1.5267159403076516 410.0 AluY_dup64372:AluY:Alu:SINE 1.4176392627612604 0.3489879065155246 2.022241517586453 409.0 X9_LINE_dup501:X9_LINE:L1:LINE 1.3091015811563245 0.3437392533533853 1.9291905341147444 409.0 L1PA4_dup6539:L1PA4:L1:LINE 1.538511458129482 0.3652598472434726 2.0745401151599983 409.0 LTR1_dup85:LTR1:ERV1:LTR 11.05686139159994 0.0003248618387484 15.054756112272772 409.0 L1PA2_dup23:L1PA2:L1:LINE 1.3540866012028034 0.3152228216366226 2.102876117517502 408.0 MLT1J_dup6381:MLT1J:ERVL-MaLR:LTR 1.205663399563243 0.2844899709651972 2.0833774881969167 408.0 LTR6B_dup144:LTR6B:ERV1:LTR 1.589520919712755 0.0519581292241098 4.935098706875423 408.0 AluSc_dup13832:AluSc:Alu:SINE 1.7405930394545743 0.4159080058002372 2.0652425713591174 408.0 AluSg_dup2232:AluSg:Alu:SINE 1.248144277454637 0.0054118856345216 7.849437642571613 408.0 L1PA7_dup1974:L1PA7:L1:LINE 1.1328987460118964 0.0259287993738065 5.449319710219353 407.0 MER11C_dup901:MER11C:ERVK:LTR 1.362014754330306 0.166133329013256 3.035328896514217 406.0 MLT1D_dup12665:MLT1D:ERVL-MaLR:LTR 1.8934720398377145 0.3099433841415775 2.610957503110279 406.0 AluSg4_dup3659:AluSg4:Alu:SINE 1.3578930712617254 0.1729003294623511 2.9733573543383143 406.0 AluSc_dup26247:AluSc:Alu:SINE 1.8213370185266444 0.0255733500930304 6.154212926637653 405.0 LTR13A_dup7:LTR13A:ERVK:LTR 1.2142135220015968 0.2457820778445239 2.304570519917988 404.0 AluSz_dup37824:AluSz:Alu:SINE 1.7818432621910707 0.0026438264880892 9.396527224882064 404.0 L1ME4b_dup4367:L1ME4b:L1:LINE 1.0229012394544037 0.4703511555936261 1.1208567064295698 403.0 HAL1M8_dup1066:HAL1M8:L1:LINE 1.043994701984658 0.3402307778492503 1.617528829964468 403.0 Tigger3b_dup1661:Tigger3b:TcMar-Tigger:DNA 2.279439823392922 0.3752794373866462 2.6026421747449437 403.0 AluJb_dup103497:AluJb:Alu:SINE 1.0082043697912952 0.3217908410714272 1.6475929432033645 402.0 HAL1ME_dup4160:HAL1ME:L1:LINE 1.0400102986416 0.4397212478800508 1.2419366624666597 402.0 AluSx1_dup69050:AluSx1:Alu:SINE 11.337139991836024 0.0023214614879023 12.253735771213472 402.0 MSTA_dup8488:MSTA:ERVL-MaLR:LTR 1.7957837385880309 0.2091665475579687 3.101889578730535 402.0 MER4-int_dup618:MER4-int:ERV1:LTR 1.0134109188215352 0.4463396862001667 1.1830052837918017 402.0 AluSx_dup106294:AluSx:Alu:SINE 1.1340800177329968 0.2874456203290723 1.9801614822971023 402.0 AluSz_dup77139:AluSz:Alu:SINE 1.7123118581592969 0.2557002064308355 2.7434202489330106 401.0 L1ME2_dup8015:L1ME2:L1:LINE 4.076011910690897 0.2483043414678888 4.036976875676616 401.0 Tigger1_dup3187:Tigger1:TcMar-Tigger:DNA 1.0865138679993704 0.2142233568044163 2.3425188978150198 401.0 Tigger1_dup3188:Tigger1:TcMar-Tigger:DNA 1.1030975071312847 0.285655789289939 1.9492106481134488 398.0 FRAM_dup6873:FRAM:Alu:SINE 1.058322837894901 0.2502384349332557 2.0804044841102765 398.0 AluSx4_dup10100:AluSx4:Alu:SINE 2.3262514909412837 0.4987342787699046 2.221663804776373 398.0 AluJb_dup107667:AluJb:Alu:SINE 1.9214374604023607 0.4198366561400447 2.194285980199052 396.0 AluJb_dup117490:AluJb:Alu:SINE 1.012184623852309 0.2742271635999528 1.8840290739585708 396.0 AluSz6_dup43939:AluSz6:Alu:SINE 1.7055133774906048 0.1577247637628512 3.434724975961064 396.0 HERVE_a-int_dup96:HERVE_a-int:ERV1:LTR 3.668267190381696 0.1365172086110313 4.747944000278579 395.0 AluSq2_dup56607:AluSq2:Alu:SINE 1.2434351484219472 0.2377098876695259 2.387057446193707 395.0 AluJb_dup115673:AluJb:Alu:SINE 2.425957869213759 0.4649285931816585 2.3834734362112275 394.0 AluSz6_dup43940:AluSz6:Alu:SINE 1.5080973466020515 0.3287952390102888 2.19746824263516 394.0 AluSz_dup93949:AluSz:Alu:SINE 1.5933899401988998 0.3588066818941023 2.1508207093895355 393.0 AluJr_dup60568:AluJr:Alu:SINE 2.0629246550465448 0.494428858352303 2.0608562734453626 392.0 L1PB1_dup5905:L1PB1:L1:LINE 6.343388056258395 0.2056128638309657 4.947251169311856 391.0 AluSx1_dup105716:AluSx1:Alu:SINE 2.4158238989457583 0.3428079823606823 2.817042685065444 391.0 MLT1C_dup18222:MLT1C:ERVL-MaLR:LTR 2.628851075603018 0.3136195045638514 3.067345224437637 391.0 HERVIP10F-int_dup53:HERVIP10F-int:ERV1:LTR 16.942658170219467 0.3446240251625713 5.619493148450426 390.0 AluJo_dup54934:AluJo:Alu:SINE 1.502961815635065 0.4473838078857841 1.748223409349768 390.0 AluSx_dup105968:AluSx:Alu:SINE 1.916198119376716 0.3124682729523712 2.6164651161786803 389.0 Tigger1_dup324:Tigger1:TcMar-Tigger:DNA 1.1022350523303217 0.2214501882032552 2.315377783922779 385.0 Harlequin-int_dup312:Harlequin-int:ERV1:LTR 1.2434140564794245 0.2611095417666175 2.2515797090243237 381.0 MER58A_dup5652:MER58A:hAT-Charlie:DNA 1.4422712962376782 0.020634993768474 6.12710575315752 379.0 MER5A_dup15478:MER5A:hAT-Charlie:DNA 1.8939988467445703 0.0264533532187904 6.161841032621019 379.0 L1PA3_dup5653:L1PA3:L1:LINE 1.1385662165105346 0.0005263323012381 11.07895664108042 378.0 MLT1F2_dup2599:MLT1F2:ERVL-MaLR:LTR 2.0496775948308583 0.036508973437587 5.811002084316411 378.0 L1P3_dup670:L1P3:L1:LINE 1.1900533133286095 0.060595092738805 4.295681433666504 376.0 AluJb_dup92890:AluJb:Alu:SINE 1.19873249016828 0.2068277339241644 2.5350081845570296 375.0 THE1B-int_dup1996:THE1B-int:ERVL-MaLR:LTR 1.6956447028537005 0.2358979979729452 2.8455988264341587 375.0 LTR10C_dup445:LTR10C:ERV1:LTR 1.0413925006614029 0.0913802254088544 3.510488111163854 375.0 LTR10A_dup58:LTR10A:ERV1:LTR 4.845081201849405 0.064023161545918 6.2417831139009525 372.0 AluSx_dup50714:AluSx:Alu:SINE 1.0352748413668595 1e-05 16.659654294953636 369.0 MER30_dup2921:MER30:hAT-Charlie:DNA 2.4468427953743896 0.481974385668547 2.343893032032907 368.0 L1ME2z_dup5161:L1ME2z:L1:LINE 1.031304991887617 0.1268761537451228 3.022978203112494 366.0 Tigger1_dup11946:Tigger1:TcMar-Tigger:DNA 1.1388405493712872 0.126984307270513 3.164843642699667 365.0 LTR2B_dup176:LTR2B:ERV1:LTR 2.062697433366788 0.0164598385711379 6.969438218208788 361.0 LTR16C_dup765:LTR16C:ERVL:LTR 2.5278636004406945 0.0418899863134382 5.915169396987791 352.0 AluSp_dup48944:AluSp:Alu:SINE 2.047540143868318 0.3319044745033751 2.6250517534161864 348.0 AluJb_dup87692:AluJb:Alu:SINE 1.3894563100400958 0.000958979254526 10.500733244860475 340.0 L1PA7_dup11190:L1PA7:L1:LINE 2.33145605073667 0.2252305955007206 3.3717565116492594 330.0 HERVIP10F-int_dup58:HERVIP10F-int:ERV1:LTR 1.0386593113021707 0.0262423261730993 5.306683096864163 324.0 MADE1_dup7468:MADE1:TcMar-Mariner:DNA 2.1272011967927043 0.0023064850756338 9.849044821334276 261.0