erv median_tumor mean_normal logfc n_sample AluSz6_dup10864:AluSz6:Alu:SINE 1.0116298532803398 0.4120753609573033 1.295701407918289 306.0 OldhAT1_dup3754:OldhAT1:hAT-Ac:DNA 3.689524641048559 0.229716003740126 4.005511676907234 306.0 SVA_E_dup408:SVA_E:SVA:Retroposon 1.7594659051549506 0.275459818795955 2.6752237639260694 306.0 AluSp_dup1142:AluSp:Alu:SINE 1.5897971295976523 0.2089834518128584 2.927382064925141 306.0 AluJb_dup110334:AluJb:Alu:SINE 1.1248792635324971 0.0376756510949624 4.899993906899009 306.0 AluSg_dup15702:AluSg:Alu:SINE 1.400443207205465 0.0428345925871658 5.030963301480419 306.0 AluJo_dup72535:AluJo:Alu:SINE 1.347446649742392 0.2207392627405336 2.609812983897557 306.0 AluSx1_dup105873:AluSx1:Alu:SINE 1.2853703439571031 0.0188810566591458 6.089100775889493 306.0 LTR88b_dup1331:LTR88b:Gypsy:LTR 1.7421266201535035 0.0198811332927147 6.453305676773126 306.0 L1MC1_dup5266:L1MC1:L1:LINE 1.0536380569784558 0.133159998821808 2.984146693268222 306.0 AluSq2_dup25958:AluSq2:Alu:SINE 1.4548249347862443 0.0949023208327711 3.938258379048233 306.0 AluJr_dup30890:AluJr:Alu:SINE 1.4756235641131266 0.4309280836060434 1.775805705472537 306.0 Charlie4a_dup1193:Charlie4a:hAT-Charlie:DNA 1.8060104194752389 0.461154855418863 1.9694830233043188 306.0 LTR8_dup2971:LTR8:ERV1:LTR 3.1561096161686075 0.2447948664736123 3.688502103972757 306.0 MSTB1_dup759:MSTB1:ERVL-MaLR:LTR 1.015352572974345 0.0685065166574448 3.8895957379343953 306.0 AluJb_dup107864:AluJb:Alu:SINE 5.934517575687797 0.0002278324850216 14.668869670321367 306.0 AluJr_dup39110:AluJr:Alu:SINE 1.486826123906801 0.0573479168884429 4.696351049230688 306.0 AluSp_dup11449:AluSp:Alu:SINE 1.4527352326429122 0.46236865931507 1.6516562732173368 306.0 L1MD2_dup3350:L1MD2:L1:LINE 2.289749861942715 0.265229905058228 3.109874647578492 306.0 L1PB4_dup4032:L1PB4:L1:LINE 1.0327497227539646 0.396750884237942 1.3801853293881186 306.0 AluJb_dup103497:AluJb:Alu:SINE 1.02917674309638 0.3217908410714272 1.6772955918917147 306.0 AluY_dup70978:AluY:Alu:SINE 1.0029264090419632 0.2093303616676797 2.2603622672383805 306.0 L1ME1_dup14741:L1ME1:L1:LINE 3.2821999352692885 0.2188578600898351 3.9065970201647104 306.0 AluSp_dup12528:AluSp:Alu:SINE 1.0429368253474915 0.0295741133308953 5.140173045348055 306.0 AluSx_dup91179:AluSx:Alu:SINE 19.23852554761734 0.0045621159872568 12.042007487661213 306.0 AluSz6_dup36815:AluSz6:Alu:SINE 2.9198286175169432 0.0012375329650786 11.20420101987814 306.0 AluSx_dup100421:AluSx:Alu:SINE 1.465713091670121 0.0059828671783624 7.9365499781052735 306.0 Tigger14a_dup108:Tigger14a:TcMar-Tigger:DNA 1.4285290024422783 0.0078075927274636 7.515436812655301 306.0 AluSx1_dup108546:AluSx1:Alu:SINE 1.7450764094457485 0.0026454172374457 9.365579208568343 306.0 AluSx1_dup66787:AluSx1:Alu:SINE 1.1101153303683549 0.4606853465061363 1.2688559520861389 306.0 AluSz_dup93694:AluSz:Alu:SINE 6.362807906301427 0.1659909287906949 5.260487259914607 306.0 AluJb_dup56968:AluJb:Alu:SINE 1.1017244790749752 0.0002169198745066 12.310313616373486 306.0 MER34A_dup1023:MER34A:ERV1:LTR 1.454231788962169 0.0170586342162612 6.413611284249528 306.0 AluJr_dup44423:AluJr:Alu:SINE 1.561995002059923 0.1951206886456881 3.0009511771550548 306.0 FLAM_A_dup12514:FLAM_A:Alu:SINE 1.140021026783375 0.3935794143678104 1.5343337644258344 306.0 AluSx_dup76021:AluSx:Alu:SINE 1.1022243519053698 0.2165124281613617 2.347896161246793 306.0 AluJr_dup72800:AluJr:Alu:SINE 4.955398125158133 0.1893768988027336 4.709668711585662 306.0 AluSp_dup17171:AluSp:Alu:SINE 4.489227496659869 0.2092895351215914 4.422895127313226 306.0 L1M3_dup291:L1M3:L1:LINE 2.1698206025020115 0.3648644439828962 2.572143295404338 306.0 MER5A_dup1435:MER5A:hAT-Charlie:DNA 1.1556524408271267 0.1791376060831384 2.689567439665161 306.0 AluY_dup87815:AluY:Alu:SINE 1.7660424227593623 0.3015034731004288 2.5502734727848324 306.0 HAL1ME_dup7566:HAL1ME:L1:LINE 1.1099371114878651 0.4941362606086044 1.16749710412928 306.0 L1M5_dup37266:L1M5:L1:LINE 1.0212453830962396 0.3835243333125898 1.4129395363375694 306.0 MLT1D_dup1540:MLT1D:ERVL-MaLR:LTR 1.5444761040421868 0.1102221352515201 3.808631664000024 306.0 AluSz_dup47996:AluSz:Alu:SINE 1.3514387032261974 0.0574684267580931 4.555582712433383 306.0 L1MC1_dup2138:L1MC1:L1:LINE 1.0523387575451033 0.2278259033593264 2.2075955031397743 306.0 MER91B_dup847:MER91B:hAT-Tip100:DNA 1.0598209525748383 0.0698424082243744 3.9235734393643127 306.0 L1MC1_dup2137:L1MC1:L1:LINE 1.9453607855078012 0.3234029913481031 2.5886328130923024 306.0 AluSz_dup102163:AluSz:Alu:SINE 1.2584575101550004 0.0002179491274605 12.495377458528958 306.0 L1PA6_dup546:L1PA6:L1:LINE 2.024842005425397 0.2927699401366612 2.78997000258036 306.0 AluSq_dup1109:AluSq:Alu:SINE 1.294646496177065 0.0170353827791468 6.247880048255579 306.0 MLT1D_dup19387:MLT1D:ERVL-MaLR:LTR 1.3573881773374157 0.4897597215684786 1.4706873177093729 306.0 LTR1_dup85:LTR1:ERV1:LTR 14.648749586876594 0.0003248618387484 15.460591714871862 306.0 SVA_D_dup1229:SVA_D:SVA:Retroposon 1.1524768230451143 0.476847412502663 1.2731381436457725 306.0 AluSg_dup2232:AluSg:Alu:SINE 1.979105620983947 0.0054118856345216 8.514501540703694 306.0 AluSc_dup26247:AluSc:Alu:SINE 2.748019189873043 0.0255733500930304 6.74760710342748 306.0 Charlie9_dup289:Charlie9:hAT-Charlie:DNA 1.134672600569805 0.217036306128723 2.3862677771045675 306.0 AluSg_dup12174:AluSg:Alu:SINE 1.0065568103442657 0.1305958981465632 2.946247111197591 305.0 AluSp_dup17164:AluSp:Alu:SINE 1.2027592204207325 0.1877517114460719 2.679449895481925 305.0 AluJr_dup60667:AluJr:Alu:SINE 1.306449843370712 0.3731617280412553 1.8077788042437437 305.0 AluY_dup96259:AluY:Alu:SINE 1.3960737036302588 0.4083043413928744 1.7736582959375216 305.0 AluYf1_dup91:AluYf1:Alu:SINE 1.560569026439817 0.2721315892790703 2.519695830599299 305.0 AluY_dup65734:AluY:Alu:SINE 1.3939887418391717 0.0057506542606521 7.921277091395348 305.0 AluJb_dup12281:AluJb:Alu:SINE 1.1498234329134096 0.3680114971951621 1.6435895937612188 305.0 MER20_dup13649:MER20:hAT-Charlie:DNA 1.051465480243579 0.2550138660579453 2.043753887914176 305.0 LTR12C_dup909:LTR12C:ERV1:LTR 1.2158526830719454 0.3372324181287096 1.8501533032034243 305.0 AluJb_dup73373:AluJb:Alu:SINE 2.2503932160871267 0.000524734054382 12.06630306668344 304.0 MamTip1_dup52:MamTip1:hAT-Tip100:DNA 1.9819526125799785 0.337510173310814 2.5539195748911405 304.0 AluSc_dup13832:AluSc:Alu:SINE 1.637450397513183 0.4159080058002372 1.9771148436982384 304.0 L1MB7_dup20631:L1MB7:L1:LINE 1.406570833971425 0.4737066641873145 1.570116334386343 304.0 AluSx_dup71151:AluSx:Alu:SINE 1.5451118235944197 0.4573538105707593 1.7563286768972228 304.0 L1MC_dup3713:L1MC:L1:LINE 1.0066781370197595 0.0857631736169687 3.5531003842562923 304.0 AluJr4_dup4313:AluJr4:Alu:SINE 1.0522202847139153 0.0007489705087858 10.456240234571904 304.0 AluJo_dup61684:AluJo:Alu:SINE 1.07617446843966 0.2475587643141733 2.120069054283298 304.0 MER70-int_dup184:MER70-int:ERVL:LTR 1.4096678337747812 0.2514137796431354 2.4872196249313694 304.0 LTR45C_dup385:LTR45C:ERV1:LTR 1.294489459656868 0.3647376412542928 1.8274522182808048 304.0 L1ME1_dup6617:L1ME1:L1:LINE 1.1888763865105467 0.4453241998369115 1.4166708005306332 304.0 AluSz_dup37824:AluSz:Alu:SINE 2.0204542833166563 0.0026438264880892 9.577836495590647 304.0 AluJo_dup50387:AluJo:Alu:SINE 1.0065015462499245 0.0025522745462867 8.623350146190813 304.0 MLT2C1_dup2391:MLT2C1:ERVL:LTR 1.4175182458276971 0.2395024624305904 2.5652549110469085 304.0 X9_LINE_dup501:X9_LINE:L1:LINE 1.5383507581521547 0.3437392533533853 2.16199797357631 303.0 Tigger3b_dup1661:Tigger3b:TcMar-Tigger:DNA 1.2666022112601527 0.3752794373866462 1.7549263550138603 303.0 AluSx1_dup115958:AluSx1:Alu:SINE 1.0333268687939805 0.2681748420710596 1.946050882165139 303.0 AluJo_dup70939:AluJo:Alu:SINE 2.070216949006601 0.002178492838753 9.892235877204982 303.0 AluSx_dup53493:AluSx:Alu:SINE 1.115640807282309 0.2883263041134938 1.9520982449898037 302.0 AluSx1_dup69050:AluSx1:Alu:SINE 10.748309515026335 0.0023214614879023 12.176788803976004 302.0 AluSq2_dup56607:AluSq2:Alu:SINE 1.0528434355482523 0.2377098876695259 2.1470170951615315 302.0 L1PA3_dup5653:L1PA3:L1:LINE 1.5707297731632297 0.0005263323012381 11.543173445305849 302.0 SVA_F_dup4:SVA_F:SVA:Retroposon 1.9291582684617896 0.2036143221834308 3.2440605582563795 301.0 SVA_A_dup46:SVA_A:SVA:Retroposon 1.1488412461100237 0.1339009560295861 3.1009412849538407 301.0 SVA_F_dup842:SVA_F:SVA:Retroposon 2.6286996277580688 0.1714938602276479 3.938120468200964 301.0 AluY_dup5563:AluY:Alu:SINE 1.9684921630818608 0.3334509562957031 2.5615444772084515 301.0 SVA_D_dup1026:SVA_D:SVA:Retroposon 5.57158834717568 0.3514679219565426 3.9866237419613055 300.0 SVA_D_dup1293:SVA_D:SVA:Retroposon 8.726082689810447 0.2829324247822702 4.94680471712014 300.0 SVA_F_dup805:SVA_F:SVA:Retroposon 1.733954237021574 0.1539008476170439 3.493992740553688 299.0 MLT1L_dup10991:MLT1L:ERVL-MaLR:LTR 1.3575783095805605 0.1256829385754321 3.433174697118131 299.0 AluSz6_dup23094:AluSz6:Alu:SINE 1.4117607470816962 0.2180234703704883 2.6949402583829007 299.0 L1MDa_dup2979:L1MDa:L1:LINE 1.3014589770368112 0.1455468842828891 3.160573976447745 298.0 SVA_D_dup510:SVA_D:SVA:Retroposon 1.0160225266918663 0.209081615354236 2.280794273347745 298.0 MER30_dup2921:MER30:hAT-Charlie:DNA 2.9222399968864785 0.481974385668547 2.600046286083071 297.0 MLT1D_dup10091:MLT1D:ERVL-MaLR:LTR 1.1631314716808248 0.1083204981896084 3.424635993060688 296.0 HERVK-int_dup102:HERVK-int:ERVK:LTR 1.583541343927681 0.4463608682754711 1.826872075378626 296.0 SVA_B_dup16:SVA_B:SVA:Retroposon 1.691284834192276 0.4248399336058941 1.9931283622875244 296.0 SVA_D_dup24:SVA_D:SVA:Retroposon 1.2433326372898876 0.2325590026270258 2.418543627664953 296.0 L1PA3_dup1321:L1PA3:L1:LINE 2.240510443930277 0.2637255971055219 3.086717940954771 295.0 SVA_D_dup491:SVA_D:SVA:Retroposon 1.406627536242926 0.1022995588574643 3.781368536068127 295.0 L1ME2_dup8015:L1ME2:L1:LINE 4.861423740822936 0.2483043414678888 4.291197498989134 293.0 AluSx_dup50714:AluSx:Alu:SINE 1.115066103242906 1e-05 16.766769712828047 293.0 SVA_D_dup280:SVA_D:SVA:Retroposon 1.3137189008497638 0.241565249229772 2.4431717788295586 293.0 SVA_F_dup683:SVA_F:SVA:Retroposon 3.2682151888449447 0.0829394271016015 5.300301085684584 292.0 AluSp_dup3006:AluSp:Alu:SINE 1.0289187538624227 0.0201778070374758 5.672215869382441 292.0 SVA_C_dup26:SVA_C:SVA:Retroposon 3.3586722670268965 0.0744788955417672 5.494915537601244 291.0 L1ME1_dup20732:L1ME1:L1:LINE 1.1063922004235196 0.2151756898933248 2.362275891777184 291.0 ERV3-16A3_I-int_dup2611:ERV3-16A3_I-int:ERVL:LTR 1.8100990990710917 0.1449238599365492 3.6427016423409673 291.0 L1ME1_dup20737:L1ME1:L1:LINE 1.1756174919900613 0.3279391910638228 1.8419185006368173 290.0 SVA_D_dup484:SVA_D:SVA:Retroposon 1.1362859686263649 0.0840349291209592 3.757193043996933 290.0 SVA_A_dup7:SVA_A:SVA:Retroposon 3.375200214674594 0.1232159385352189 4.775712292128776 290.0 L1MB3_dup10872:L1MB3:L1:LINE 1.022158391044148 0.2100936896188283 2.282514034986333 290.0 MLT1D_dup12665:MLT1D:ERVL-MaLR:LTR 2.6986291645352205 0.3099433841415775 3.122150126146272 289.0 SVA_D_dup132:SVA_D:SVA:Retroposon 2.405563757336747 0.0922211982552955 4.705132815852279 289.0 MLT1D_dup12653:MLT1D:ERVL-MaLR:LTR 1.3260387290243942 0.1456467840680696 3.186577160487824 279.0 LTR13A_dup7:LTR13A:ERVK:LTR 1.2483478993356938 0.2457820778445239 2.34456842680695 273.0 FRAM_dup4281:FRAM:Alu:SINE 1.3434885360222204 0.1266586819956041 3.4069661338058097 273.0 SVA_D_dup566:SVA_D:SVA:Retroposon 1.1936709673377903 0.0521248993564986 4.517288712616307 271.0 L1PB1_dup5905:L1PB1:L1:LINE 5.423638496252259 0.2056128638309657 4.721258588889317 270.0 AluSp_dup48944:AluSp:Alu:SINE 2.888764626937508 0.3319044745033751 3.121612675574042 268.0 Tigger19b_dup2289:Tigger19b:TcMar-Tigger:DNA 1.0448465209824649 0.4020937269441775 1.3776873043355162 267.0 MER5A_dup15478:MER5A:hAT-Charlie:DNA 1.77103340816637 0.0264533532187904 6.064997007121719 257.0 MLT1F2_dup2599:MLT1F2:ERVL-MaLR:LTR 1.7989132977475992 0.036508973437587 5.622730740922698 250.0 LTR7Y_dup61:LTR7Y:ERV1:LTR 2.172290274795506 0.2488539134292584 3.1258459179604774 248.0 MER58A_dup5652:MER58A:hAT-Charlie:DNA 1.2320554615337649 0.020634993768474 5.899830388170962 247.0 AluJb_dup87692:AluJb:Alu:SINE 1.3568382103296803 0.000958979254526 10.466461477358957 246.0 HERVH-int_dup1969:HERVH-int:ERV1:LTR 1.6093986315230129 0.2118301363735582 2.925541954577431 244.0 MADE1_dup7468:MADE1:TcMar-Mariner:DNA 2.5894654391538947 0.0023064850756338 10.132742630709624 213.0 AluSc8_dup20330:AluSc8:Alu:SINE 1.3567107761730428 0.0012056699720795 10.1360624317212 204.0