erv median_tumor mean_normal logfc n_sample LTR8_dup2971:LTR8:ERV1:LTR 3.100241796106028 0.2447948664736123 3.66273553041604 541.0 AluSc8_dup3929:AluSc8:Alu:SINE 1.6830644660747616 0.4240188533349215 1.988890118474801 541.0 OldhAT1_dup3754:OldhAT1:hAT-Ac:DNA 3.2230795037831017 0.229716003740126 3.810516501541963 541.0 AluSz6_dup36815:AluSz6:Alu:SINE 2.1165286470035847 0.0012375329650786 10.740017344347397 541.0 L1MA4A_dup2646:L1MA4A:L1:LINE 1.008969920648077 0.4304615177296836 1.2289269906670548 541.0 AluSx_dup91179:AluSx:Alu:SINE 16.055384869271784 0.0045621159872568 11.781066502176014 541.0 AluJo_dup72535:AluJo:Alu:SINE 1.0373666378739794 0.2207392627405336 2.2325107091833254 541.0 AluJb_dup107864:AluJb:Alu:SINE 5.3964784527216985 0.0002278324850216 14.531757177712128 541.0 AluSp_dup12528:AluSp:Alu:SINE 1.1350253137669384 0.0295741133308953 5.262245747782059 541.0 L1MC1_dup2137:L1MC1:L1:LINE 2.1672232902095696 0.3234029913481031 2.744442874417249 541.0 L1MC1_dup2138:L1MC1:L1:LINE 1.7632556518554003 0.2278259033593264 2.9522379709782305 541.0 L1PA6_dup546:L1PA6:L1:LINE 2.2943093314432543 0.2927699401366612 2.9702205775176984 541.0 MER34A_dup1023:MER34A:ERV1:LTR 2.087314076005592 0.0170586342162612 6.935001744208793 541.0 AluSx1_dup105873:AluSx1:Alu:SINE 1.0101258215187006 0.0188810566591458 5.741451690470056 541.0 AluSp_dup3052:AluSp:Alu:SINE 1.0420510645797556 0.0443564282974505 4.554138966452653 541.0 AluJr_dup72800:AluJr:Alu:SINE 1.5398259474370437 0.1893768988027336 3.0234350275912547 541.0 LTR2C_dup54:LTR2C:ERV1:LTR 4.576876258162113 0.310476164059117 3.881808868392915 541.0 AluJo_dup50387:AluJo:Alu:SINE 1.143634199048725 0.0025522745462867 8.80762642541411 541.0 Tigger14a_dup108:Tigger14a:TcMar-Tigger:DNA 1.6223300562743352 0.0078075927274636 7.698973845734717 541.0 AluJb_dup73373:AluJb:Alu:SINE 1.3591040815682884 0.000524734054382 11.338781901366223 541.0 AluJb_dup84655:AluJb:Alu:SINE 1.2352685331039737 0.1110143580584994 3.476006516200832 541.0 AluSz_dup93694:AluSz:Alu:SINE 4.391034888470055 0.1659909287906949 4.72538469003044 541.0 L1MD2_dup3350:L1MD2:L1:LINE 1.3301102545016334 0.265229905058228 2.326230481776329 541.0 AluSz6_dup29664:AluSz6:Alu:SINE 1.0551376085145725 0.3820210182941402 1.4657072432859355 540.0 SVA_D_dup1229:SVA_D:SVA:Retroposon 1.2483296746688612 0.476847412502663 1.3883993957546 540.0 AluSc_dup26247:AluSc:Alu:SINE 2.329685434224244 0.0255733500930304 6.509350192789831 540.0 MamTip1_dup52:MamTip1:hAT-Tip100:DNA 1.3171662346977635 0.337510173310814 1.9644345403271208 540.0 AluSq_dup1109:AluSq:Alu:SINE 1.1902309979621175 0.0170353827791468 6.126563421570488 540.0 AluSp_dup17171:AluSp:Alu:SINE 3.3650599704972413 0.2092895351215914 4.007060135100136 540.0 AluSp_dup1142:AluSp:Alu:SINE 1.2519690523843836 0.2089834518128584 2.582738287219682 540.0 AluSx1_dup108546:AluSx1:Alu:SINE 1.1511455952872576 0.0026454172374457 8.765359316358214 539.0 LTR88b_dup1331:LTR88b:Gypsy:LTR 1.0230040811160397 0.0198811332927147 5.685268092472899 539.0 Charlie4a_dup1193:Charlie4a:hAT-Charlie:DNA 1.0689162240975891 0.461154855418863 1.212825593887776 539.0 AluSz_dup37824:AluSz:Alu:SINE 1.327561934829918 0.0026438264880892 8.97193595620515 539.0 HAL1M8_dup1066:HAL1M8:L1:LINE 1.0001785874433358 0.3402307778492503 1.5556720635745385 539.0 AluSx_dup71151:AluSx:Alu:SINE 1.0470340491982686 0.4573538105707593 1.1949257825460031 538.0 AluJr_dup39110:AluJr:Alu:SINE 1.401957290416243 0.0573479168884429 4.611557506572077 538.0 HERVE_a-int_dup96:HERVE_a-int:ERV1:LTR 1.5022001292963447 0.1365172086110313 3.459922301489522 538.0 AluSx_dup100421:AluSx:Alu:SINE 1.0344917361064454 0.0059828671783624 7.433869370097557 538.0 SVA_D_dup445:SVA_D:SVA:Retroposon 5.086170895852312 0.1334218778948128 5.252512780130091 538.0 L1PA3_dup1115:L1PA3:L1:LINE 1.8409101932023448 0.4680770941019235 1.9756011761722605 537.0 Tigger1_dup8984:Tigger1:TcMar-Tigger:DNA 1.9031382895990767 0.4575146523094087 2.056490544554169 537.0 AluJo_dup70939:AluJo:Alu:SINE 1.5686856415850197 0.002178492838753 9.492010184772944 537.0 HERVK-int_dup102:HERVK-int:ERVK:LTR 2.3521432925693837 0.4463608682754711 2.3976934927156264 536.0 AluSp_dup14386:AluSp:Alu:SINE 1.0388483478321149 0.3904131443060018 1.4119115324520504 536.0 AluSc_dup13832:AluSc:Alu:SINE 2.242044650319211 0.4159080058002372 2.430478648945124 536.0 L1MDa_dup2979:L1MDa:L1:LINE 1.2545692982052257 0.1455468842828891 3.107636301407989 536.0 AluSq2_dup25958:AluSq2:Alu:SINE 1.082797392780538 0.0949023208327711 3.512176139911453 536.0 L1PA10_dup6827:L1PA10:L1:LINE 1.2261576937641354 0.4932040244898218 1.3138880560414117 536.0 HUERS-P3-int_dup372:HUERS-P3-int:ERV1:LTR 1.1496885199367066 0.0102572563970316 6.808454349252068 535.0 MLT1D_dup11737:MLT1D:ERVL-MaLR:LTR 1.1839997615285185 0.1971386244875996 2.5863864204265457 535.0 L1PB1_dup5315:L1PB1:L1:LINE 1.924318660828955 0.1077496189140812 4.158593052484239 534.0 L1MB8_dup1763:L1MB8:L1:LINE 1.014056839554144 0.259115602067641 1.9684707281302756 534.0 L1MC1_dup8047:L1MC1:L1:LINE 1.0733604063725986 0.1616830779209942 2.730893980295708 532.0 AluY_dup99150:AluY:Alu:SINE 1.097494006277398 0.0442416041452611 4.632665553754888 531.0 AluSx4_dup3234:AluSx4:Alu:SINE 1.3449214194328016 0.3747890471528333 1.843371184636918 531.0 L1PA5_dup5182:L1PA5:L1:LINE 1.105246154897388 0.1498924924111866 2.8823676845510016 531.0 AluSz_dup11808:AluSz:Alu:SINE 11.583715912815824 0.0905077193686202 6.999841566613985 530.0 L1MC1_dup5480:L1MC1:L1:LINE 1.956765618246532 0.1028755834644454 4.249498441924335 529.0 L1PA3_dup1120:L1PA3:L1:LINE 1.2372248013512652 0.4358200479832063 1.5053031910991077 529.0 LTR1_dup85:LTR1:ERV1:LTR 2.6725304530072744 0.0003248618387484 13.006092485413957 528.0 L1PA5_dup8776:L1PA5:L1:LINE 1.0141762103874987 0.0684301569328371 3.8895322723270014 527.0 L1HS_dup1616:L1HS:L1:LINE 1.1294550892743362 0.2468976263073953 2.1936420342494705 527.0 AluJb_dup115673:AluJb:Alu:SINE 1.0059209388849557 0.4649285931816585 1.1134358602240475 527.0 AluSx1_dup69050:AluSx1:Alu:SINE 11.246511783393224 0.0023214614879023 12.242156636885625 526.0 AluSx1_dup110056:AluSx1:Alu:SINE 1.0175677785616215 0.4133347642539089 1.2997422789454394 526.0 MER65-int_dup835:MER65-int:ERV1:LTR 1.7873015181353866 0.0130686126071448 7.095533238075058 523.0 L1MB8_dup3477:L1MB8:L1:LINE 1.5524176989395386 0.3003449133866926 2.369824650497715 523.0 THE1B-int_dup2014:THE1B-int:ERVL-MaLR:LTR 1.0651537695925049 0.2678596597550775 1.99151248869804 520.0 AluSz_dup11810:AluSz:Alu:SINE 5.0860908941528455 0.4039516285442505 3.6543027928805305 517.0 MER20_dup10570:MER20:hAT-Charlie:DNA 1.5771589287899446 0.4794554752219361 1.71785929618274 516.0 HSMAR1_dup583:HSMAR1:TcMar-Mariner:DNA 1.7841419024017564 0.342314790317388 2.3818348321139764 516.0 AluSq2_dup6975:AluSq2:Alu:SINE 1.1952018569487497 0.2456125885695712 2.2827978834464813 514.0 LTR33A_dup208:LTR33A:ERVL:LTR 1.2491678380177542 0.0975560632045876 3.678591979523554 513.0 L1PA2_dup2825:L1PA2:L1:LINE 1.0566696559410955 0.1800513114118117 2.553044408360245 512.0 MLT1A0_dup14514:MLT1A0:ERVL-MaLR:LTR 1.355721760678524 0.4643796430535307 1.545684484236051 511.0 HERVE_a-int_dup2:HERVE_a-int:ERV1:LTR 1.0500796464126405 0.0708487747175296 3.889612044403481 504.0 LTR7B_dup104:LTR7B:ERV1:LTR 1.7768366350267806 0.0164712232699766 6.753219529915788 500.0 ERV3-16A3_I-int_dup2611:ERV3-16A3_I-int:ERVL:LTR 1.2849705881264952 0.1449238599365492 3.148368296135266 497.0 LTR12C_dup1159:LTR12C:ERV1:LTR 1.4512251268435548 0.0180559155246374 6.32865595617318 493.0 L1PA3_dup1321:L1PA3:L1:LINE 2.1755959222856225 0.2637255971055219 3.044301116338864 484.0 AluSp_dup48944:AluSp:Alu:SINE 1.3520218620808413 0.3319044745033751 2.0262784960044984 483.0 AluJb_dup87692:AluJb:Alu:SINE 1.3651271247041887 0.000958979254526 10.475248079063926 472.0 LTR12C_dup1156:LTR12C:ERV1:LTR 1.1245883398790455 0.0455730948213315 4.625070837679121 468.0 L1PB1_dup5905:L1PB1:L1:LINE 1.3614331235873949 0.2056128638309657 2.7271236836434425 467.0 MER30_dup2921:MER30:hAT-Charlie:DNA 1.9931132439179209 0.481974385668547 2.047995300812783 466.0 L1PA6_dup4626:L1PA6:L1:LINE 1.329701407366198 0.0078869281237918 7.397423105732199 455.0 L1PA4_dup9334:L1PA4:L1:LINE 1.3393414808808248 0.0111968938891953 6.9022814571552304 450.0