erv median_tumor mean_normal logfc n_sample AluSp_dup12528:AluSp:Alu:SINE 1.2130916854695877 0.0295741133308953 5.358209867843068 87.0 AluY_dup35561:AluY:Alu:SINE 1.2261829293264943 0.1243112229828391 3.302145769173924 87.0 AluSx_dup108495:AluSx:Alu:SINE 1.2405562493983786 0.3451542978898808 1.8456737974389783 87.0 AluSx1_dup105873:AluSx1:Alu:SINE 1.475855214459714 0.0188810566591458 6.28846787976006 87.0 LTR8_dup2971:LTR8:ERV1:LTR 4.519241205614062 0.2447948664736123 4.206435350979045 87.0 AluSx_dup71151:AluSx:Alu:SINE 1.6163320432031063 0.4573538105707593 1.8213410250301685 87.0 LTR47B2_dup88:LTR47B2:ERVL:LTR 2.457015041600383 0.3297614325831889 2.8974121071431447 87.0 HERVL-int_dup1891:HERVL-int:ERVL:LTR 3.223554671150433 0.3788884220342036 3.0888074914878274 87.0 AluSp_dup1142:AluSp:Alu:SINE 1.2965978388766777 0.2089834518128584 2.633270460109314 87.0 AluSx1_dup45089:AluSx1:Alu:SINE 1.0891096988988682 0.3021926053059398 1.849609011508122 87.0 LTR6A_dup74:LTR6A:ERV1:LTR 2.381411191596964 0.4032639769510729 2.5620203056946425 87.0 L1ME4a_dup21436:L1ME4a:L1:LINE 1.3973218350332406 0.1647584854836594 3.084239669789105 87.0 L1MB7_dup15902:L1MB7:L1:LINE 6.613053568995753 0.3348972791336152 4.303526028105931 87.0 AluJb_dup107864:AluJb:Alu:SINE 7.906683607785484 0.0002278324850216 15.082811609380189 87.0 AluJo_dup50387:AluJo:Alu:SINE 1.2315175476399889 0.0025522745462867 8.91443794222045 87.0 AluSp_dup44932:AluSp:Alu:SINE 1.3131055843893986 0.1985418116755987 2.725468158217365 87.0 AluJb_dup73373:AluJb:Alu:SINE 1.7863811391452546 0.000524734054382 11.733165882164766 87.0 L1PB1_dup6616:L1PB1:L1:LINE 1.0419720355166209 0.0196351871970747 5.729731396437022 87.0 MLT1H1_dup140:MLT1H1:ERVL-MaLR:LTR 3.1916103263158586 0.286716771863292 3.476586314717678 87.0 MER30_dup2921:MER30:hAT-Charlie:DNA 3.847405249440552 0.481974385668547 2.9968574153811334 87.0 Tigger14a_dup108:Tigger14a:TcMar-Tigger:DNA 7.710771159302593 0.0078075927274636 9.947781638275186 87.0 AluJb_dup84655:AluJb:Alu:SINE 1.6174805742545997 0.1110143580584994 3.864930200796473 87.0 OldhAT1_dup1108:OldhAT1:hAT-Ac:DNA 1.7326877957423468 0.4104040692677234 2.077894785144951 87.0 MER47A_dup1739:MER47A:TcMar-Tigger:DNA 1.1583015148689837 0.3000904151932887 1.9485417014287831 87.0 Arthur1_dup261:Arthur1:hAT-Tip100:DNA 1.5154361290856762 0.3044346357341874 2.31552863861837 87.0 L1PA3_dup5653:L1PA3:L1:LINE 5.399892964592219 0.0005263323012381 13.324669253988828 87.0 AluY_dup19371:AluY:Alu:SINE 2.045052802810923 0.1783047743600482 3.5197208549417534 87.0 OldhAT1_dup3754:OldhAT1:hAT-Ac:DNA 3.341008056408387 0.229716003740126 3.862360187260154 87.0 MER58A_dup8962:MER58A:hAT-Charlie:DNA 1.2607125038513165 0.4256208786409722 1.566598488809976 87.0 AluSq_dup1109:AluSq:Alu:SINE 1.5379116973885267 0.0170353827791468 6.496294495260518 87.0 LTR50_dup121:LTR50:ERVL:LTR 1.1896429018741483 0.2171599509800438 2.453698612658196 87.0 AluSx_dup91179:AluSx:Alu:SINE 23.72545763172482 0.0045621159872568 12.344445168482896 87.0 L1ME4a_dup21417:L1ME4a:L1:LINE 1.4859877862527593 0.1807573414382983 3.039296109643664 87.0 AluSz_dup102163:AluSz:Alu:SINE 1.0773532557907814 0.0002179491274605 12.271212327531051 87.0 L1ME2_dup8015:L1ME2:L1:LINE 7.381696869092926 0.2483043414678888 4.893771102635084 87.0 L1MDa_dup787:L1MDa:L1:LINE 1.1438775200546962 0.3438758665129249 1.733972809725337 87.0 AluSp_dup17171:AluSp:Alu:SINE 3.116976583687584 0.2092895351215914 3.896575235756589 87.0 LTR47B2_dup89:LTR47B2:ERVL:LTR 2.2348465063242258 0.2720663965213679 3.038145065183709 87.0 L1MC1_dup2137:L1MC1:L1:LINE 1.1488841610299674 0.3234029913481031 1.8288284138310604 87.0 AluSc_dup13832:AluSc:Alu:SINE 3.0670941892555024 0.4159080058002372 2.88253611112612 87.0 AluSz_dup40418:AluSz:Alu:SINE 1.1177518199178298 0.2281260851389705 2.292696568321224 87.0 AluSz6_dup29664:AluSz6:Alu:SINE 3.079525997350101 0.3820210182941402 3.0109843867051187 87.0 L1MB8_dup13307:L1MB8:L1:LINE 1.331119590574557 0.2197036870405345 2.5990092056099408 87.0 AluSx1_dup108546:AluSx1:Alu:SINE 1.7587267978380714 0.0026454172374457 9.376820391996732 87.0 AluJo_dup61684:AluJo:Alu:SINE 1.3131055843893986 0.2475587643141733 2.407139994334287 87.0 AluSc_dup33256:AluSc:Alu:SINE 1.045578381260562 0.0277790638852019 5.234159423293522 87.0 LTR1_dup85:LTR1:ERV1:LTR 41.1582278949067 0.0003248618387484 16.95099506002596 87.0 AluSz6_dup36815:AluSz6:Alu:SINE 5.757374690698016 0.0012375329650786 12.183728434917589 87.0 L1PB1_dup12600:L1PB1:L1:LINE 1.1370110651074328 0.3131506226057627 1.860317641822895 87.0 MLT1J_dup6381:MLT1J:ERVL-MaLR:LTR 2.1922664494019144 0.2844899709651972 2.945973455320907 87.0 L1M4_dup16795:L1M4:L1:LINE 1.7618799873281046 0.2809713118272526 2.64862091784655 87.0 L1PA6_dup546:L1PA6:L1:LINE 1.5724305263250826 0.2927699401366612 2.42515693780077 87.0 AluSz_dup37824:AluSz:Alu:SINE 1.89449461003022 0.0026438264880892 9.484969822747823 87.0 AluSx4_dup7329:AluSx4:Alu:SINE 1.789731879381144 0.0027908800155052 9.324807655562362 87.0 AluJo_dup72535:AluJo:Alu:SINE 2.1344634279111747 0.2207392627405336 3.273458274803273 87.0 AluSq2_dup25958:AluSq2:Alu:SINE 1.0347222715185838 0.0949023208327711 3.4466564087955844 87.0 AluJo_dup70939:AluJo:Alu:SINE 2.3424680893291687 0.002178492838753 10.070483308557296 87.0 LTR88b_dup1331:LTR88b:Gypsy:LTR 3.92266700648484 0.0198811332927147 7.624291062821534 87.0 LTR2C_dup54:LTR2C:ERV1:LTR 3.659932586276834 0.310476164059117 3.5592626562675127 87.0 AluJb_dup56968:AluJb:Alu:SINE 1.728496512046553 0.0002169198745066 12.960067831089397 87.0 AluSq2_dup37925:AluSq2:Alu:SINE 1.095422396645675 0.041105984733163 4.735995017292616 87.0 MER34A_dup1023:MER34A:ERV1:LTR 1.6122416788777931 0.0170586342162612 6.562422070044689 87.0 AluSz_dup93694:AluSz:Alu:SINE 7.212935165605368 0.1659909287906949 5.441410148771658 87.0 AluJr_dup39110:AluJr:Alu:SINE 2.2001442414564703 0.0573479168884429 5.261713217120436 87.0 SVA_D_dup1229:SVA_D:SVA:Retroposon 1.0917588582584363 0.476847412502663 1.1950546429378863 87.0 L1MD2_dup3350:L1MD2:L1:LINE 1.1286961084736364 0.265229905058228 2.0893417497060094 87.0 MLT1B_dup772:MLT1B:ERVL-MaLR:LTR 1.2399177944421629 0.2212908469089489 2.4862287899072606 87.0 HAL1ME_dup5616:HAL1ME:L1:LINE 1.5798616018256997 0.0861157168140141 4.197377806375875 87.0 AluY_dup19370:AluY:Alu:SINE 1.239902287433735 0.1527503160306227 3.020979161101259 87.0 AluJr_dup44423:AluJr:Alu:SINE 1.61488330400723 0.1951206886456881 3.0489912553813454 87.0 AluSc8_dup19972:AluSc8:Alu:SINE 1.2777098669068194 0.184113349524997 2.794894135516891 87.0 MER5A1_dup9768:MER5A1:hAT-Charlie:DNA 1.4292623005561909 0.2242956270336804 2.671797308093339 86.0 AluSp_dup31765:AluSp:Alu:SINE 1.490685845458083 0.1746822112457784 3.093171644862774 86.0 AluJr_dup22066:AluJr:Alu:SINE 1.5086139827589018 0.0010960878509001 10.426644553315002 86.0 AluJr_dup80711:AluJr:Alu:SINE 5.516847763463647 0.0934636186626581 5.883295464257065 86.0 AluJr_dup72800:AluJr:Alu:SINE 1.4651660856971909 0.1893768988027336 2.9517319533128354 86.0 AluSx1_dup69050:AluSx1:Alu:SINE 15.323809441201384 0.0023214614879023 12.68845402256028 86.0 HAL1ME_dup4160:HAL1ME:L1:LINE 1.1671538733099784 0.4397212478800508 1.4083336210622517 86.0 AluSq2_dup35098:AluSq2:Alu:SINE 1.3291597348448168 0.1820756589782761 2.867904522494077 86.0 L1PA7_dup10529:L1PA7:L1:LINE 1.1777771171756792 0.2914529846781181 2.014731468024414 86.0 MLT1D_dup12665:MLT1D:ERVL-MaLR:LTR 4.755181471175852 0.3099433841415775 3.9394237849051374 86.0 AluSg7_dup4258:AluSg7:Alu:SINE 8.34540209109533 0.1622388719295057 5.684790130640272 86.0 L1P4_dup2392:L1P4:L1:LINE 1.4611475080661298 0.1395838008548895 3.38789840370148 86.0 AluSg_dup19731:AluSg:Alu:SINE 1.06409655478729 0.2452967619414029 2.1170289703899168 86.0 Charlie1_dup1744:Charlie1:hAT-Charlie:DNA 3.112634088385735 0.0605763132917169 5.683238400214593 86.0 Tigger1_dup10712:Tigger1:TcMar-Tigger:DNA 1.0725642572923484 0.0417893780350381 4.681783985186533 86.0 MLT1D_dup12653:MLT1D:ERVL-MaLR:LTR 2.6660747381630023 0.1456467840680696 4.194171472380966 86.0 Tigger3b_dup4124:Tigger3b:TcMar-Tigger:DNA 1.988660593147531 0.1032906561668602 4.267015414074722 86.0 AluSx1_dup110056:AluSx1:Alu:SINE 13.821353989098217 0.4133347642539089 5.063444434729877 86.0 MSTA_dup8488:MSTA:ERVL-MaLR:LTR 10.358106862697603 0.2091665475579687 5.62996440064625 86.0 AluSx1_dup44144:AluSx1:Alu:SINE 3.738261754251048 0.0499516154229951 6.225692445174191 86.0 L1ME2_dup3002:L1ME2:L1:LINE 1.0034459012551409 0.1471840561397197 2.7692695352417798 86.0 MLT1D_dup12664:MLT1D:ERVL-MaLR:LTR 2.9903065855562616 0.1408147652934414 4.408422883965786 86.0 LTR16B1_dup51:LTR16B1:ERVL:LTR 1.7237652092652502 0.3450747476169247 2.320582473992121 85.0 AluSg_dup898:AluSg:Alu:SINE 2.820237707804673 0.4166814642633846 2.7587999379192345 85.0 HERVH-int_dup3710:HERVH-int:ERV1:LTR 1.212854531835189 0.0451784842294694 4.746626847588117 85.0 Tigger13a_dup2918:Tigger13a:TcMar-Tigger:DNA 8.195457265932925 0.2983002850503822 4.779987185409905 85.0 L1MB7_dup21965:L1MB7:L1:LINE 1.1620734222800035 0.2256059127545812 2.3648244402002865 85.0 MER44B_dup2068:MER44B:TcMar-Tigger:DNA 1.0249987100721878 0.3887823041128126 1.3985876345700154 85.0 L1P4_dup2393:L1P4:L1:LINE 1.7224270564444646 0.1836211835218236 3.229638476636996 85.0 AluSz6_dup46201:AluSz6:Alu:SINE 1.5546657946718965 0.0119763421171849 7.020273329156448 85.0 Tigger19b_dup2289:Tigger19b:TcMar-Tigger:DNA 1.3768679805452575 0.4020937269441775 1.7757865009237943 85.0 FRAM_dup4281:FRAM:Alu:SINE 2.526537885451384 0.1266586819956041 4.318143936247581 85.0 Tigger3b_dup4123:Tigger3b:TcMar-Tigger:DNA 1.6600715138057254 0.100488894052368 4.046137422519286 85.0 AluJb_dup97040:AluJb:Alu:SINE 1.0394634913135934 0.1321409985702012 2.9756890306321115 85.0 Charlie5_dup21:Charlie5:hAT-Charlie:DNA 2.9016034246160056 0.4324087035391265 2.746382886062853 84.0 HERVK-int_dup102:HERVK-int:ERVK:LTR 1.43236512401245 0.4463608682754711 1.6821168375751123 84.0 AluY_dup100947:AluY:Alu:SINE 1.367552546550581 0.0067146466648125 7.670069067769548 84.0 MER102b_dup3668:MER102b:hAT-Charlie:DNA 1.0614552247858893 0.4523267608987009 1.2306062581034596 84.0 MER99_dup290:MER99:hAT:DNA 1.097249512303452 0.1463706394964839 2.906193531570408 84.0 L1PA3_dup10795:L1PA3:L1:LINE 4.456529558817394 0.2234534943336879 4.31787416420756 84.0 Charlie15b_dup1405:Charlie15b:hAT-Charlie:DNA 1.117996133543467 0.3609590356261806 1.6310081752801482 84.0 HERVH-int_dup4654:HERVH-int:ERV1:LTR 2.0695304412817053 0.0715990426728824 4.853219361669376 84.0 AluJr_dup65319:AluJr:Alu:SINE 1.182292921867652 0.1034654286330318 3.5143668190311805 83.0 AluJo_dup38169:AluJo:Alu:SINE 1.0347222715185838 0.2891735284269425 1.8392361917452065 83.0 AluJb_dup87692:AluJb:Alu:SINE 1.5312981388559883 0.000958979254526 10.64096797190448 83.0 HERVH-int_dup389:HERVH-int:ERV1:LTR 1.6723999504777107 0.1741099708594902 3.2638491756299377 83.0 MLT1H1_dup139:MLT1H1:ERVL-MaLR:LTR 1.4604047065015444 0.0690937603363882 4.401668982340328 83.0 L1ME3F_dup267:L1ME3F:L1:LINE 2.832538013829542 0.038125728714346 6.215186594802384 83.0 FRAM_dup2981:FRAM:Alu:SINE 1.5475989977210596 0.0211638833233374 6.192283520039098 82.0 AluJo_dup29599:AluJo:Alu:SINE 1.2408755218974965 0.0247914333439588 5.645372904091892 82.0 HERVH-int_dup1453:HERVH-int:ERV1:LTR 2.882040237839365 0.0767631960816437 5.230531887476354 82.0 AluSp_dup48607:AluSp:Alu:SINE 1.2054605572272423 0.0314532916688477 5.260229629585149 82.0 ERV3-16A3_I-int_dup2611:ERV3-16A3_I-int:ERVL:LTR 4.5608384338999945 0.1449238599365492 4.975932022524645 81.0 AluSx_dup6917:AluSx:Alu:SINE 1.1789984396610649 0.060235119571267 4.290813115469617 81.0 AluJr_dup80712:AluJr:Alu:SINE 1.926886390359536 0.0312724648833369 5.945234765904458 81.0 LTR7_dup579:LTR7:ERV1:LTR 3.824093308588188 0.0504993796162977 6.24270825105194 81.0 AluSx_dup97839:AluSx:Alu:SINE 1.1177518199178298 0.0011450166006928 9.931015664561592 80.0 MLT1I_dup525:MLT1I:ERVL-MaLR:LTR 1.2600826110159782 0.0200546935731756 5.973434587106985 80.0 L1M2b_dup16:L1M2b:L1:LINE 1.39334421875125 0.0870652346792882 4.000311139553597 78.0 MLT1I-int_dup37:MLT1I-int:ERVL-MaLR:LTR 1.2098762230165865 0.0221058509455103 5.774287378544634 76.0 LTR8B_dup1149:LTR8B:ERV1:LTR 1.3975189179366063 0.0005048542445534 11.434713261811654 76.0 Tigger6a_dup741:Tigger6a:TcMar-Tigger:DNA 2.7154826849468354 0.0014808167727496 10.840599807356249 75.0 MER90_dup115:MER90:ERV1:LTR 1.4938948324755672 0.0153207469044442 6.607448146267316 75.0 AluJo_dup41011:AluJo:Alu:SINE 1.7970852412388312 0.0015166892343507 10.21051761513062 73.0 L1PA5_dup7441:L1PA5:L1:LINE 3.4499695372839065 0.2122842477558379 4.022514395926889 73.0 AluSp_dup48944:AluSp:Alu:SINE 2.426183370939176 0.3319044745033751 2.869848609407605 70.0 MSTA_dup8503:MSTA:ERVL-MaLR:LTR 1.7373476847681948 0.0866102503578828 4.326204911859371 67.0 LTR64_dup121:LTR64:ERV1:LTR 1.0153997263178611 0.0001499607713119 12.725175004726845 64.0 AluSz_dup39623:AluSz:Alu:SINE 1.3200196442132195 0.025819384169936 5.675960998687701 60.0 AluSx1_dup39678:AluSx1:Alu:SINE 1.582682777439455 0.0024502072239592 9.335252635819314 60.0