erv median_tumor mean_normal logfc n_sample OldhAT1_dup3754:OldhAT1:hAT-Ac:DNA 2.526979482584932 0.229716003740126 3.4594906763040414 179.0 AluSz_dup93694:AluSz:Alu:SINE 6.752240570810766 0.1659909287906949 5.3461899984740455 179.0 AluSp_dup12528:AluSp:Alu:SINE 1.2322493653750737 0.0295741133308953 5.380815512374734 179.0 AluSc_dup13832:AluSc:Alu:SINE 2.283459738353371 0.4159080058002372 2.456884991784827 179.0 Charlie4a_dup1193:Charlie4a:hAT-Charlie:DNA 1.096940987147029 0.461154855418863 1.2501627212920643 179.0 AluSx_dup91179:AluSx:Alu:SINE 15.67828731890748 0.0045621159872568 11.746777222783876 179.0 LTR88b_dup1331:LTR88b:Gypsy:LTR 2.74277538430047 0.0198811332927147 7.108092671529922 179.0 AluSz6_dup29664:AluSz6:Alu:SINE 2.392095416380388 0.3820210182941402 2.646551016450516 179.0 L1MD2_dup3350:L1MD2:L1:LINE 1.2090477969195232 0.265229905058228 2.1885559236374355 179.0 MLT1J_dup6381:MLT1J:ERVL-MaLR:LTR 1.4760424602591382 0.2844899709651972 2.3752845233031934 179.0 AluJr_dup39110:AluJr:Alu:SINE 1.3478142496313728 0.0573479168884429 4.554736790942542 179.0 AluSx1_dup108546:AluSx1:Alu:SINE 1.4570425776982054 0.0026454172374457 9.105332037746743 179.0 AluSq_dup1109:AluSq:Alu:SINE 1.0292673456314485 0.0170353827791468 5.916939586865682 179.0 AluJb_dup107864:AluJb:Alu:SINE 4.831109874060696 0.0002278324850216 14.372093578556084 179.0 AluJo_dup72535:AluJo:Alu:SINE 1.2006196114522436 0.2207392627405336 2.443363970162252 179.0 MER49_dup1305:MER49:ERV1:LTR 1.2015258161863536 0.4412608656295442 1.445163937861366 179.0 AluSq2_dup25958:AluSq2:Alu:SINE 1.18158135393485 0.0949023208327711 3.638131785841322 179.0 AluJr_dup84017:AluJr:Alu:SINE 1.123637248190109 0.3639411179145401 1.6263993946365312 179.0 AluJb_dup92890:AluJb:Alu:SINE 1.8345099148935005 0.2068277339241644 3.1488931444182144 179.0 AluSz_dup102163:AluSz:Alu:SINE 1.2871948518465226 0.0002179491274605 12.527951412651092 179.0 AluJb_dup84655:AluJb:Alu:SINE 1.0746568552429028 0.1110143580584994 3.275057886725662 179.0 LTR1_dup85:LTR1:ERV1:LTR 23.166449807367904 0.0003248618387484 16.1218511652339 179.0 LTR8_dup2971:LTR8:ERV1:LTR 3.2571482968907173 0.2447948664736123 3.733964197563749 179.0 SVA_D_dup1229:SVA_D:SVA:Retroposon 1.1061942754633736 0.476847412502663 1.2140051873687512 179.0 Tigger14a_dup108:Tigger14a:TcMar-Tigger:DNA 4.085701530680961 0.0078075927274636 9.031490301970637 179.0 HAL1ME_dup4160:HAL1ME:L1:LINE 1.046264046652262 0.4397212478800508 1.2505858396808889 179.0 Charlie2b_dup1135:Charlie2b:hAT-Charlie:DNA 1.3862805360469577 0.411852314814177 1.7510202369276775 179.0 AluJb_dup56968:AluJb:Alu:SINE 1.299814409217567 0.0002169198745066 12.548855785036084 179.0 LTR2C_dup54:LTR2C:ERV1:LTR 4.209818835022325 0.310476164059117 3.761203730889653 179.0 AluSp_dup1142:AluSp:Alu:SINE 1.0081318461570428 0.2089834518128584 2.270223717370349 179.0 AluJb_dup73373:AluJb:Alu:SINE 1.3657585932417295 0.000524734054382 11.345828458365611 179.0 AluSp_dup17171:AluSp:Alu:SINE 3.081080749272385 0.2092895351215914 3.8798644121796895 179.0 L1PA6_dup546:L1PA6:L1:LINE 2.584081376135472 0.2927699401366612 3.141812164063989 179.0 L1MDa_dup787:L1MDa:L1:LINE 1.2090477969195232 0.3438758665129249 1.813911504316933 179.0 L1MC1_dup2137:L1MC1:L1:LINE 2.1258001992785847 0.3234029913481031 2.716601078195321 179.0 L1MC1_dup2138:L1MC1:L1:LINE 1.2904675871506348 0.2278259033593264 2.5018902124329814 179.0 HAL1ME_dup7566:HAL1ME:L1:LINE 1.2946391352136897 0.4941362606086044 1.3895691880488867 179.0 MER34A_dup1023:MER34A:ERV1:LTR 3.2951721961415443 0.0170586342162612 7.593707904797767 179.0 AluSc_dup26247:AluSc:Alu:SINE 3.8392557874017137 0.0255733500930304 7.230041706468932 178.0 MLT1K_dup15840:MLT1K:ERVL-MaLR:LTR 1.610239369015179 0.3327659589692898 2.2746954046556613 178.0 MLT1L_dup10991:MLT1L:ERVL-MaLR:LTR 2.0721407261463693 0.1256829385754321 4.043261261988737 178.0 L1MC5_dup2220:L1MC5:L1:LINE 1.5604863498242647 0.4393122126493036 1.828677226235651 178.0 AluSz_dup93949:AluSz:Alu:SINE 2.4182355203930364 0.3588066818941023 2.752676098257107 178.0 MER20_dup13649:MER20:hAT-Charlie:DNA 1.023482719278955 0.2550138660579453 2.00483914471102 178.0 AluJo_dup65935:AluJo:Alu:SINE 1.4213513064290595 0.4639684686261284 1.6151645124768257 178.0 AluSx4_dup10100:AluSx4:Alu:SINE 2.7877114735660875 0.4987342787699046 2.482737980717316 178.0 AluSz6_dup36815:AluSz6:Alu:SINE 3.018323961167338 0.0012375329650786 11.252064989589844 178.0 AluJb_dup115673:AluJb:Alu:SINE 3.4394704639546965 0.4649285931816585 2.8871054070501923 178.0 MLT1B_dup948:MLT1B:ERVL-MaLR:LTR 1.2803295292444992 0.1940662173317227 2.721894273163925 178.0 AluSx_dup105968:AluSx:Alu:SINE 2.586910909860221 0.3124682729523712 3.049448754576383 178.0 AluSx_dup71151:AluSx:Alu:SINE 1.1161896979159656 0.4573538105707593 1.2871996594880517 178.0 AluSz_dup96270:AluSz:Alu:SINE 1.001394656643946 0.3683053515596958 1.443036397271358 177.0 AluSz6_dup43940:AluSz6:Alu:SINE 2.045573920306524 0.3287952390102888 2.637244358509486 177.0 HSMAR1_dup532:HSMAR1:TcMar-Mariner:DNA 1.289924218758042 0.1388098642436239 3.2161043129330475 177.0 L1PA3_dup5653:L1PA3:L1:LINE 1.9657959536352017 0.0005263323012381 11.866852023284505 177.0 MLT1C_dup18222:MLT1C:ERVL-MaLR:LTR 3.129525452436665 0.3136195045638514 3.318856718602954 177.0 HAL1_dup9460:HAL1:L1:LINE 2.7707639461382807 0.3058362515234525 3.1794524782251394 177.0 AluSx1_dup105716:AluSx1:Alu:SINE 2.91541876458002 0.3428079823606823 3.0882305155402534 177.0 THE1D-int_dup348:THE1D-int:ERVL-MaLR:LTR 2.066086417774492 0.4818669853647762 2.100193734009004 177.0 L1ME1_dup27121:L1ME1:L1:LINE 1.4743153209444044 0.1398476319207532 3.3981173859806013 177.0 AluSz_dup37824:AluSz:Alu:SINE 1.0930302983748037 0.0026438264880892 8.691490179973323 177.0 MER57F_dup142:MER57F:ERV1:LTR 1.7316768612437874 0.0722232426967899 4.583562735301558 177.0 AluJo_dup70939:AluJo:Alu:SINE 2.61686739466966 0.002178492838753 10.230294734004495 177.0 L1MB8_dup13307:L1MB8:L1:LINE 1.077679791469789 0.2197036870405345 2.2942975908763747 176.0 AluSz6_dup43939:AluSz6:Alu:SINE 1.974109237729492 0.1577247637628512 3.645720728757839 176.0 L1M4_dup16795:L1M4:L1:LINE 1.7399206227742237 0.2809713118272526 2.630526751359402 176.0 L1PA3_dup1115:L1PA3:L1:LINE 1.1228314965837385 0.4680770941019235 1.262323366690553 175.0 MER3_dup8600:MER3:hAT-Charlie:DNA 1.0847080353694212 0.2628754538544866 2.0448554321003223 175.0 HERV35I-int_dup77:HERV35I-int:ERV1:LTR 1.6056445900347809 0.1976016791882729 3.022485475280006 175.0 THE1C_dup3536:THE1C:ERVL-MaLR:LTR 1.448198090086188 0.2621850992834243 2.4656013526911926 175.0 HERVK-int_dup102:HERVK-int:ERVK:LTR 1.3871470247131856 0.4463608682754711 1.635838248935447 175.0 AluSg_dup24620:AluSg:Alu:SINE 1.0092009017261372 0.0161472712512016 5.965779207689944 175.0 AluSx1_dup69050:AluSx1:Alu:SINE 12.957147201660518 0.0023214614879023 12.446427144598037 174.0 L1MB8_dup3477:L1MB8:L1:LINE 2.16136861990194 0.3003449133866926 2.847253007972968 174.0 THE1B-int_dup2014:THE1B-int:ERVL-MaLR:LTR 1.1343826258470706 0.2678596597550775 2.0823581119531056 174.0 L1ME1_dup25854:L1ME1:L1:LINE 1.2087316785607047 0.0627853909085158 4.266921304293598 174.0 L1PA6_dup1514:L1PA6:L1:LINE 1.1828127694248811 0.0463463124397368 4.673623358603976 173.0 AluJb_dup107667:AluJb:Alu:SINE 1.0196059845962082 0.4198366561400447 1.280111706784146 171.0 L1ME2_dup8015:L1ME2:L1:LINE 1.261955737104434 0.2483043414678888 2.3454799173152288 169.0 MLT1D_dup12665:MLT1D:ERVL-MaLR:LTR 1.0470515029676433 0.3099433841415775 1.7562557935671683 169.0 AluJo_dup38169:AluJo:Alu:SINE 1.7000427706720092 0.2891735284269425 2.5555636469789254 169.0 MER65-int_dup835:MER65-int:ERV1:LTR 1.1799307102546557 0.0130686126071448 6.496452342081765 168.0 MLT1F2_dup937:MLT1F2:ERVL-MaLR:LTR 2.761986269342505 0.4375656225012822 2.658134845699932 168.0 MER30_dup2921:MER30:hAT-Charlie:DNA 2.5990099753738933 0.481974385668547 2.430933788924005 168.0 L1ME4a_dup17230:L1ME4a:L1:LINE 1.5468366267615965 0.3299954647452272 2.2288027285771337 168.0 L1ME3D_dup2886:L1ME3D:L1:LINE 1.1048833048297118 0.2157000848219401 2.3567953546764806 167.0 L1ME3Cz_dup8273:L1ME3Cz:L1:LINE 1.1578720303621837 0.2471547065729821 2.2279895283340085 167.0 AluSz6_dup22113:AluSz6:Alu:SINE 1.0559970163736063 0.3113659946243275 1.7619224621625649 167.0 HERVIP10F-int_dup53:HERVIP10F-int:ERV1:LTR 1.7447202029841695 0.3446240251625713 2.339900506687715 166.0 L1MA5_dup3310:L1MA5:L1:LINE 1.1388203117754578 0.0494638783449475 4.525020957376038 166.0 L1PA3_dup1321:L1PA3:L1:LINE 1.4799953411304552 0.2637255971055219 2.4884831238696723 164.0 AluJb_dup87692:AluJb:Alu:SINE 1.702961103152003 0.000958979254526 10.794258256810911 160.0 AluSp_dup48944:AluSp:Alu:SINE 1.3002011575773198 0.3319044745033751 1.9698948596436825 130.0