erv median_tumor mean_normal logfc n_sample LTR88b_dup1331:LTR88b:Gypsy:LTR 1.552009010978025 0.0198811332927147 6.286593125819684 472.0 AluSx1_dup108546:AluSx1:Alu:SINE 1.6982250997209865 0.0026454172374457 9.326316702073726 472.0 LTR8_dup2971:LTR8:ERV1:LTR 3.434572253229892 0.2447948664736123 3.810485225734648 472.0 AluSz6_dup36815:AluSz6:Alu:SINE 1.3026560341287117 0.0012375329650786 10.03977351989479 472.0 L1M1_dup4527:L1M1:L1:LINE 25.664826814240037 0.1786031907917184 7.166890860271995 472.0 AluSz6_dup29376:AluSz6:Alu:SINE 1.190464796814965 0.3317479787122618 1.8433653787407465 472.0 MER112_dup3868:MER112:hAT-Charlie:DNA 1.591095768308357 0.0661789658583047 4.587504116464129 472.0 AluSx1_dup115567:AluSx1:Alu:SINE 1.3124297574713144 0.0814422826841487 4.010318401976681 472.0 AluY_dup64372:AluY:Alu:SINE 1.0905878511053595 0.3489879065155246 1.643857040697188 472.0 OldhAT1_dup3754:OldhAT1:hAT-Ac:DNA 3.801667656218494 0.229716003740126 4.048709142052139 472.0 AluJo_dup50387:AluJo:Alu:SINE 1.0192786481641738 0.0025522745462867 8.64154926380643 472.0 AluJo_dup72535:AluJo:Alu:SINE 1.6942657444946003 0.2207392627405336 2.9402450094824246 472.0 AluSx_dup91179:AluSx:Alu:SINE 14.336514500316692 0.0045621159872568 11.617703571367992 472.0 AluSc8_dup19972:AluSc8:Alu:SINE 1.2528153627575611 0.184113349524997 2.766507667797537 472.0 AluY_dup32514:AluY:Alu:SINE 1.197701319045467 0.002077007119835 9.171546298872403 472.0 AluSp_dup17171:AluSp:Alu:SINE 3.6520011529737326 0.2092895351215914 4.125115139806683 472.0 MLT1F1_dup2550:MLT1F1:ERVL-MaLR:LTR 1.1247313495590072 0.3225169213127924 1.802133683460641 472.0 AluJr_dup72800:AluJr:Alu:SINE 3.191407959365552 0.1893768988027336 4.074860781805995 472.0 AluSp_dup17164:AluSp:Alu:SINE 1.12422977904819 0.1877517114460719 2.5820389714520555 472.0 AluSg_dup15702:AluSg:Alu:SINE 1.3969872273987374 0.0428345925871658 5.027398653435211 472.0 AluSx_dup9576:AluSx:Alu:SINE 5.060100876714644 0.1560566384077273 5.019024512671404 472.0 AluSc8_dup3929:AluSc8:Alu:SINE 1.356771267233854 0.4240188533349215 1.6779772044315864 472.0 AluSz_dup102163:AluSz:Alu:SINE 1.541265869829474 0.0002179491274605 12.78783670113184 472.0 AluJb_dup107864:AluJb:Alu:SINE 5.019722437187728 0.0002278324850216 14.42734650750783 472.0 MLT1K_dup15840:MLT1K:ERVL-MaLR:LTR 1.890726363944544 0.3327659589692898 2.5063608213789816 472.0 L1PA6_dup546:L1PA6:L1:LINE 2.926690975312449 0.2927699401366612 3.321431082837182 472.0 AluSx1_dup105873:AluSx1:Alu:SINE 1.5098724912033454 0.0188810566591458 6.32134340289048 472.0 AluJr_dup39110:AluJr:Alu:SINE 1.9838624635147988 0.0573479168884429 5.112427117744993 472.0 MER34A_dup1023:MER34A:ERV1:LTR 3.6761127876260487 0.0170586342162612 7.751535077486391 472.0 AluSp_dup1142:AluSp:Alu:SINE 1.511012266599181 0.2089834518128584 2.8540547592501664 472.0 AluJr_dup30901:AluJr:Alu:SINE 1.3494614995391054 0.3250853151993179 2.053493523971075 472.0 X9_LINE_dup501:X9_LINE:L1:LINE 1.1413568881924745 0.3437392533533853 1.7313634600808536 472.0 AluJb_dup56968:AluJb:Alu:SINE 1.3913425786900295 0.0002169198745066 12.647027825115458 472.0 AluSz6_dup29664:AluSz6:Alu:SINE 1.0246172183891424 0.3820210182941402 1.4233611204304764 472.0 L1ME1_dup14741:L1ME1:L1:LINE 1.0165124893605175 0.2188578600898351 2.215561837776939 472.0 AluSp_dup3052:AluSp:Alu:SINE 1.1934246273298812 0.0443564282974505 4.749820442950631 472.0 L1PA6_dup2721:L1PA6:L1:LINE 3.1658018623838435 0.2438478610544489 3.698517741798746 472.0 AluSc8_dup19793:AluSc8:Alu:SINE 1.814371482394331 0.3176790011739988 2.513828234769943 472.0 AluSx_dup37265:AluSx:Alu:SINE 1.0835245921448011 0.326388098022754 1.7310715433697872 472.0 AluSq_dup1109:AluSq:Alu:SINE 1.4642519569778285 0.0170353827791468 6.425485647734362 472.0 AluSp_dup11449:AluSp:Alu:SINE 1.7151648573179747 0.46236865931507 1.891231735046432 472.0 Tigger4b_dup2156:Tigger4b:TcMar-Tigger:DNA 1.1156413822050346 0.4872832370944458 1.1950408552807268 472.0 MER49_dup1305:MER49:ERV1:LTR 3.35816670135563 0.4412608656295442 2.927970139348219 472.0 AluSq2_dup25958:AluSq2:Alu:SINE 1.576180839398445 0.0949023208327711 4.053845889552782 472.0 AluSz_dup93694:AluSz:Alu:SINE 3.275716395699781 0.1659909287906949 4.302634149781675 472.0 AluY_dup35561:AluY:Alu:SINE 1.0577996074829454 0.1243112229828391 3.089037889338638 472.0 AluSx1_dup103332:AluSx1:Alu:SINE 1.5455059550052153 0.4666171557700829 1.7277679571519515 472.0 AluJb_dup67344:AluJb:Alu:SINE 1.025191611396585 0.4295932882606487 1.2548502202718614 471.0 MLT1F1-int_dup148:MLT1F1-int:ERVL-MaLR:LTR 1.4650218780754924 0.4106847790855086 1.834818825611343 471.0 AluJb_dup84655:AluJb:Alu:SINE 1.3551387148275698 0.1110143580584994 3.609622351480813 471.0 AluJb_dup53617:AluJb:Alu:SINE 1.1599310112494683 0.1824579183855656 2.668403333230918 471.0 AluJb_dup73373:AluJb:Alu:SINE 1.4721257947127258 0.000524734054382 11.454026914467535 471.0 HUERS-P3-int_dup372:HUERS-P3-int:ERV1:LTR 1.267927450943663 0.0102572563970316 6.9496834970008345 471.0 AluSc_dup13832:AluSc:Alu:SINE 3.5749967869954853 0.4159080058002372 3.1036055845230157 471.0 AluSc_dup26247:AluSc:Alu:SINE 4.205555900645406 0.0255733500930304 7.361511536695346 471.0 AluSx_dup103943:AluSx:Alu:SINE 1.5124562747484966 0.3290026738257197 2.200722220546934 471.0 AluY_dup8339:AluY:Alu:SINE 1.0461029993499296 0.2582368453641623 2.018258141494305 471.0 Charlie9_dup289:Charlie9:hAT-Charlie:DNA 1.0553188586701117 0.217036306128723 2.281670663047417 471.0 AluJo_dup70939:AluJo:Alu:SINE 1.2926100177024349 0.002178492838753 9.21274099152833 471.0 L1MA1_dup2411:L1MA1:L1:LINE 1.4180499830709992 0.4902543273978149 1.5323061151990784 471.0 SVA_D_dup1229:SVA_D:SVA:Retroposon 1.105592693116747 0.476847412502663 1.213220392176542 471.0 L1MDa_dup787:L1MDa:L1:LINE 1.113196635366928 0.3438758665129249 1.6947486782252876 470.0 AluJr4_dup4313:AluJr4:Alu:SINE 1.677979028171702 0.0007489705087858 11.129528151532014 470.0 LTR6A_dup74:LTR6A:ERV1:LTR 1.6399433677945725 0.4032639769510729 2.023849552547441 470.0 L1MC4a_dup640:L1MC4a:L1:LINE 1.163817221523315 0.3646074349697688 1.6744486137515422 470.0 AluSz6_dup39072:AluSz6:Alu:SINE 1.95310937468986 0.0826347028473857 4.562881156868081 470.0 LTR1_dup85:LTR1:ERV1:LTR 2.490429247572933 0.0003248618387484 12.904280523135634 470.0 L1M3_dup291:L1M3:L1:LINE 1.1839404940679334 0.3648644439828962 1.6981640992728766 470.0 L1M1_dup4528:L1M1:L1:LINE 14.08193021188599 0.1044078635288352 7.075470914412751 469.0 L1P2_dup1208:L1P2:L1:LINE 1.8698902225432863 0.3715451182625647 2.331344255955015 469.0 HERVE-int_dup201:HERVE-int:ERV1:LTR 15.573699867673136 0.4237072947775241 5.199899951030451 468.0 AluJb_dup123560:AluJb:Alu:SINE 5.479565194996849 0.0750758909211185 6.189567918994516 468.0 AluSz_dup37824:AluSz:Alu:SINE 1.4592385736965223 0.0026438264880892 9.108372558965783 467.0 Tigger1_dup5491:Tigger1:TcMar-Tigger:DNA 2.0575126454345183 0.2644366730707643 2.959907123252251 467.0 AluJb_dup74892:AluJb:Alu:SINE 1.5948608775592217 0.0579806206136352 4.781715994681069 466.0 L1MB8_dup11944:L1MB8:L1:LINE 1.5491874286135037 0.0643725475652174 4.588922323962995 466.0 AluSc_dup17965:AluSc:Alu:SINE 1.494414586138138 0.1281315321376564 3.5438829814514423 466.0 HERVK-int_dup102:HERVK-int:ERVK:LTR 2.147788603746504 0.4463608682754711 2.26656954382618 465.0 AluSz_dup47210:AluSz:Alu:SINE 13.418120155149438 0.0272650296669489 8.942915127166408 465.0 L1PB1_dup12829:L1PB1:L1:LINE 1.182533549073013 0.3950341382787979 1.581831874722639 465.0 HERVE-int_dup200:HERVE-int:ERV1:LTR 4.674180392823972 0.1638539068309026 4.834231436668835 464.0 MLT1D_dup20345:MLT1D:ERVL-MaLR:LTR 1.1618948411281238 0.3497789998645094 1.731963921556435 463.0 SVA_D_dup914:SVA_D:SVA:Retroposon 1.3000520484701088 0.1350535341105196 3.266966085475605 462.0 AluJo_dup54934:AluJo:Alu:SINE 1.7966913911743905 0.4473838078857841 2.005757678362836 462.0 MER94_dup3824:MER94:hAT-Blackjack:DNA 2.6086318912282973 0.1323171167156883 4.3012217694837815 462.0 AluJr_dup60568:AluJr:Alu:SINE 1.3226041514719933 0.494428858352303 1.4195464784535392 461.0 L1M5_dup28713:L1M5:L1:LINE 3.3150792434932708 0.2052438935151931 4.013632152652274 461.0 MER74B_dup458:MER74B:ERVL:LTR 1.3531595293151613 0.1790057728353372 2.918253914896293 460.0 L1PA5_dup4054:L1PA5:L1:LINE 1.0898619934076978 0.3037908791454333 1.84299500067864 459.0 Tigger16a_dup1470:Tigger16a:TcMar-Tigger:DNA 3.5084548021972086 0.1060375097122897 5.048189177778456 459.0 AluSx1_dup69050:AluSx1:Alu:SINE 9.779599688295717 0.0023214614879023 12.040526349336073 459.0 L1PBa_dup1828:L1PBa:L1:LINE 4.337200265864809 0.0733275215643681 5.886265471717052 458.0 Tigger1_dup10712:Tigger1:TcMar-Tigger:DNA 1.03783221410231 0.0417893780350381 4.63429312570309 458.0 MER74B_dup455:MER74B:ERVL:LTR 2.164453105926033 0.2108396804211506 3.3597842285637425 458.0 AluSz_dup21777:AluSz:Alu:SINE 1.0480937525337497 0.0074921770863181 7.12816705737576 458.0 L1PA3_dup10795:L1PA3:L1:LINE 6.005513192414721 0.2234534943336879 4.748241023929763 457.0 SVA_E_dup408:SVA_E:SVA:Retroposon 2.313722725691701 0.275459818795955 3.070302189658868 456.0 L1PB3_dup2938:L1PB3:L1:LINE 2.5826115789470663 0.0778290538073656 5.052378052368364 454.0 L1PA12_dup1459:L1PA12:L1:LINE 2.3378894784149136 0.043402481506214 5.751285389071379 453.0 AluSx1_dup100326:AluSx1:Alu:SINE 1.134457461439392 0.077090498824151 3.8793056401038135 452.0 MER4-int_dup2801:MER4-int:ERV1:LTR 1.3088795502841724 0.3924253001856876 1.7378423771441138 451.0 AluSp_dup43889:AluSp:Alu:SINE 1.1289364738601129 0.0650009290646491 4.118360157719289 446.0 AluSz6_dup1796:AluSz6:Alu:SINE 1.058030927564177 0.0476212013984591 4.473633971914467 444.0 L1MB7_dup9932:L1MB7:L1:LINE 1.3153910631107617 0.0447379494579893 4.877848830697185 444.0 AluYj4_dup942:AluYj4:Alu:SINE 3.687245979882194 0.0176008264411256 7.710756681318753 443.0 AluSz_dup48235:AluSz:Alu:SINE 1.003943136159417 0.0808953005269047 3.6334778522028817 440.0 AluJb_dup87692:AluJb:Alu:SINE 1.8515492338878232 0.000958979254526 10.9149456858142 440.0 MER115_dup841:MER115:hAT-Tip100:DNA 1.2244628209757864 0.0223229591561987 5.77747687391785 439.0 AluSx1_dup71795:AluSx1:Alu:SINE 3.1424341242328664 0.0010071562561761 11.607379257038296 439.0 L1M2_dup7611:L1M2:L1:LINE 1.151408618654957 0.0312555534371492 5.203143557891311 438.0 L1M2b_dup16:L1M2b:L1:LINE 1.096023324593728 0.0870652346792882 3.654037927734361 432.0 Arthur1B_dup1324:Arthur1B:hAT-Tip100:DNA 1.2795255173027358 0.13298378445825 3.2662866742571297 431.0 AluJb_dup58533:AluJb:Alu:SINE 2.6856399419642107 0.0040866885826934 9.360117873258742 427.0 L1PA3_dup10757:L1PA3:L1:LINE 1.012597402529018 0.2077370908219173 2.2852299555474307 426.0 MLT1J_dup7930:MLT1J:ERVL-MaLR:LTR 1.590302351083598 0.0034060668165052 8.866978627458485 425.0 MER52A_dup1381:MER52A:ERV1:LTR 1.4386934342029276 0.0272555668098072 5.722064473065018 423.0 MER52A_dup1380:MER52A:ERV1:LTR 1.080266390966313 0.0838712802256007 3.687066433216145 420.0 AluJr_dup55785:AluJr:Alu:SINE 1.0404565019976677 0.0237366281073679 5.45395783351378 419.0 L1M5_dup28841:L1M5:L1:LINE 1.3564882829808078 0.0115049656346113 6.881476101564618 416.0 AluSz_dup67474:AluSz:Alu:SINE 1.02846226366399 0.0273165001202647 5.234572396604017 410.0 MER30_dup2921:MER30:hAT-Charlie:DNA 2.160023752874194 0.481974385668547 2.164018795019846 409.0 AluJr_dup55786:AluJr:Alu:SINE 1.4066961328933956 0.017221199365652 6.351981286272964 407.0 L1MB4_dup3225:L1MB4:L1:LINE 1.1155096630173194 0.0508094464944072 4.456462452789714 407.0 LTR2752_dup21:LTR2752:ERV1:LTR 1.6527395747859144 0.0780133736102343 4.404994141928996 397.0 AluSc_dup23857:AluSc:Alu:SINE 2.035830752585091 0.0102534530081931 7.633363977366656 396.0 PRIMA41-int_dup11:PRIMA41-int:ERV1:LTR 1.8067755501196523 0.0002740904947636 12.686477378010592 388.0 AluJr_dup82497:AluJr:Alu:SINE 1.3897248896442091 1e-05 17.08443978930742 306.0