erv median_tumor mean_normal logfc n_sample MER34A_dup1023:MER34A:ERV1:LTR 1.0266673141532818 0.0170586342162612 5.911322806597572 554.0 AluSp_dup11449:AluSp:Alu:SINE 2.181909512818818 0.46236865931507 2.2384757558717663 554.0 AluJb_dup105930:AluJb:Alu:SINE 1.5667558492279938 0.4201583608019265 1.898775281240135 554.0 L1PA6_dup546:L1PA6:L1:LINE 9.140961558271766 0.2927699401366612 4.964506594541231 554.0 AluJr_dup30890:AluJr:Alu:SINE 2.3723712263079597 0.4309280836060434 2.4608107519075118 554.0 AluSx4_dup7329:AluSx4:Alu:SINE 1.417670462189569 0.0027908800155052 8.98858639951218 554.0 AluJb_dup107864:AluJb:Alu:SINE 3.4667609539899797 0.0002278324850216 13.893327274964127 554.0 L1MD2_dup3350:L1MD2:L1:LINE 2.168124767690642 0.265229905058228 3.031132425228292 554.0 AluSz6_dup18929:AluSz6:Alu:SINE 1.3111005226979402 0.4815132511268067 1.445130895570122 554.0 LOR1a_dup489:LOR1a:ERV1:LTR 1.3295722272725643 0.3108566041419033 2.0966410175070305 554.0 AluY_dup96259:AluY:Alu:SINE 2.0851554531162337 0.4083043413928744 2.352438131345121 554.0 AluSz6_dup10864:AluSz6:Alu:SINE 1.0932515051005984 0.4120753609573033 1.4076452257335497 554.0 AluSx_dup91179:AluSx:Alu:SINE 1.297856496666144 0.0045621159872568 8.152212032557907 554.0 L1M4c_dup2900:L1M4c:L1:LINE 2.264976550909722 0.1186294620538065 4.254961856260636 554.0 L1ME1_dup14741:L1ME1:L1:LINE 2.456340400057868 0.2188578600898351 3.488444400320659 554.0 L1MC1_dup2137:L1MC1:L1:LINE 1.8096067560705 0.3234029913481031 2.4842712923385064 554.0 L1MA2_dup458:L1MA2:L1:LINE 1.0234673484335892 0.4119820528890241 1.312811680966814 554.0 AluSz_dup102163:AluSz:Alu:SINE 1.4810986365750989 0.0002179491274605 12.730388674385106 554.0 L1PB4_dup4032:L1PB4:L1:LINE 1.0287240560753417 0.396750884237942 1.374550703524028 554.0 LTR8_dup2971:LTR8:ERV1:LTR 2.259289811149284 0.2447948664736123 3.206224135689812 554.0 Tigger19b_dup1295:Tigger19b:TcMar-Tigger:DNA 1.476146739805514 0.2964794116636536 2.315832314291865 554.0 AluJo_dup72535:AluJo:Alu:SINE 1.0025696218921958 0.2207392627405336 2.1832872571510307 554.0 AluSx1_dup66787:AluSx1:Alu:SINE 1.424169382718957 0.4606853465061363 1.6282671280699672 554.0 AluSq2_dup25958:AluSq2:Alu:SINE 2.140674388926397 0.0949023208327711 4.495478189766583 553.0 AluSx3_dup2817:AluSx3:Alu:SINE 1.1642337058416152 0.445978079987771 1.3843359829793285 553.0 AluSp_dup1142:AluSp:Alu:SINE 3.2380316504074536 0.2089834518128584 3.953656474160132 553.0 AluSc_dup16641:AluSc:Alu:SINE 1.3648468983379567 0.3664090520158658 1.8972120756489224 553.0 AluSq2_dup28260:AluSq2:Alu:SINE 1.0270441418196592 0.1206777774203163 3.089266253108502 553.0 AluSp_dup12528:AluSp:Alu:SINE 1.3365479935366773 0.0295741133308953 5.498032918009916 553.0 THE1A_dup595:THE1A:ERVL-MaLR:LTR 1.142955830576255 0.2998060412926653 1.930668291848176 553.0 THE1D_dup4220:THE1D:ERVL-MaLR:LTR 1.9730914010567928 0.4344079714163638 2.183335306648916 553.0 FLAM_A_dup12514:FLAM_A:Alu:SINE 1.224420647072098 0.3935794143678104 1.6373726083814386 553.0 L1ME4a_dup26682:L1ME4a:L1:LINE 1.3445451580554018 0.1339514801609403 3.327335782423866 553.0 LTR2_dup62:LTR2:ERV1:LTR 1.385661729098043 0.4439097797999378 1.6422367082363665 553.0 LTR7B_dup779:LTR7B:ERV1:LTR 1.069312556929246 0.3059855511067414 1.8051481758622523 553.0 L1M3_dup291:L1M3:L1:LINE 1.1829066114014937 0.3648644439828962 1.6969037073471318 553.0 AluY_dup87815:AluY:Alu:SINE 1.2527439420294106 0.3015034731004288 2.054845035125719 553.0 AluJr4_dup17429:AluJr4:Alu:SINE 1.2208414692552183 0.0007997497500413 10.576039616359523 552.0 AluY_dup1142:AluY:Alu:SINE 2.6810608915266023 0.0860910991447893 4.960796088738222 552.0 L1MA2_dup2659:L1MA2:L1:LINE 1.0529010967067505 0.4131757499072177 1.3495424372932583 552.0 AluSz6_dup38759:AluSz6:Alu:SINE 1.5662254231628263 0.369462545962642 2.083791846718834 552.0 AluSc8_dup7305:AluSc8:Alu:SINE 1.217858140978334 0.0449135051643763 4.761052966137448 552.0 AluSx1_dup6801:AluSx1:Alu:SINE 1.0970895302263772 0.2092392858767764 2.3904556082100323 552.0 MER67C_dup844:MER67C:ERV1:LTR 1.0281940804159682 0.4718080530988913 1.1238406625772126 552.0 AluSc8_dup19972:AluSc8:Alu:SINE 1.6150470436035764 0.184113349524997 3.1329100475847245 552.0 L1MC4a_dup86:L1MC4a:L1:LINE 1.1453790376651891 0.0586064625434236 4.288621535263363 552.0 L1MA9_dup12488:L1MA9:L1:LINE 1.3484062392010896 0.35838869622059 1.9116581681150224 552.0 AluSz_dup39154:AluSz:Alu:SINE 1.9662618610548557 0.0472943159261973 5.377644854708453 552.0 Charlie9_dup289:Charlie9:hAT-Charlie:DNA 1.3301540263329112 0.217036306128723 2.6155850095558915 552.0 L1ME1_dup219:L1ME1:L1:LINE 2.5024501244594983 0.0276275029982396 6.501092329424263 552.0 L1ME1_dup20732:L1ME1:L1:LINE 1.51989317398559 0.2151756898933248 2.820382927608223 551.0 LTR7B_dup778:LTR7B:ERV1:LTR 1.59710834080935 0.0792149160332547 4.333546259039284 551.0 AluSz_dup93694:AluSz:Alu:SINE 7.426149538977838 0.1659909287906949 5.483438059514609 551.0 AluYa5_dup1843:AluYa5:Alu:SINE 1.7327139492282342 0.0323474836259334 5.743236205370594 551.0 L1PA11_dup558:L1PA11:L1:LINE 1.7950354040704548 0.054267472614677 5.047780768877485 551.0 AluSg_dup33078:AluSg:Alu:SINE 1.24619169191577 0.1560176990798497 2.9977443971150173 551.0 AluSp_dup47071:AluSp:Alu:SINE 1.078313738173594 0.354680982011088 1.6041831148504433 550.0 HERVH48-int_dup24:HERVH48-int:ERV1:LTR 1.0546375600201037 0.1078513195373675 3.2896315503246223 550.0 L1MC3_dup9063:L1MC3:L1:LINE 1.5212678276602984 0.1301273427796256 3.5472781271216736 550.0 AluSg_dup15702:AluSg:Alu:SINE 3.2422592484314463 0.0428345925871658 6.242079275331743 550.0 AluSq2_dup55936:AluSq2:Alu:SINE 1.0706698471046154 0.4463713786081964 1.2621972482351815 550.0 AluSc_dup17965:AluSc:Alu:SINE 1.4209490182032236 0.1281315321376564 3.471157333383241 550.0 AluSq2_dup53786:AluSq2:Alu:SINE 1.678719813665086 0.0054365908225744 8.270443492561764 549.0 AluSz_dup59494:AluSz:Alu:SINE 1.4281262863552873 0.0280246304812054 5.671284398924668 549.0 AluJr_dup61011:AluJr:Alu:SINE 1.056715368502078 0.2842206706305247 1.894503445050648 549.0 HUERS-P3-int_dup372:HUERS-P3-int:ERV1:LTR 1.5834059724909624 0.0102572563970316 7.270242496426128 549.0 AluYb8_dup2486:AluYb8:Alu:SINE 2.440135258067478 0.0110908870120779 7.781442557133777 549.0 AluSc_dup13832:AluSc:Alu:SINE 3.4454349308407446 0.4159080058002372 3.050349750754427 549.0 AluJb_dup103497:AluJb:Alu:SINE 1.3209002847090745 0.3217908410714272 2.0373263918249376 549.0 AluSz_dup37824:AluSz:Alu:SINE 1.1227491853861618 0.0026438264880892 8.730192462830153 548.0 L1ME1_dup6617:L1ME1:L1:LINE 1.3169444680886977 0.4453241998369115 1.564266594358955 548.0 AluSx1_dup25346:AluSx1:Alu:SINE 1.034253559343953 0.2217838225924768 2.221363881510696 548.0 THE1B_dup5323:THE1B:ERVL-MaLR:LTR 1.1225622059219011 0.1830555158910081 2.6164422418312165 548.0 AluY_dup35561:AluY:Alu:SINE 1.6700881769561042 0.1243112229828391 3.7478958199990986 548.0 UCON132b_dup533:UCON132b:hAT-Tip100:DNA 4.923863680735658 0.0554126188135661 6.473432459758925 548.0 HAL1_dup20998:HAL1:L1:LINE 1.2482078652578616 0.2279656191667221 2.4529700430016765 547.0 HERVK-int_dup167:HERVK-int:ERVK:LTR 2.0300902969879715 0.3329436697116388 2.60819388346184 547.0 HERV35I-int_dup77:HERV35I-int:ERV1:LTR 3.416680823022282 0.1976016791882729 4.111928369552018 547.0 L1ME4a_dup23378:L1ME4a:L1:LINE 2.37204001874624 0.0138407183664644 7.421065715358733 547.0 Harlequin-int_dup238:Harlequin-int:ERV1:LTR 2.475026303955155 0.2813414849289727 3.137049653258788 547.0 L1ME1_dup20737:L1ME1:L1:LINE 1.2080095653030702 0.3279391910638228 1.8811316488493908 547.0 MLT1G1_dup152:MLT1G1:ERVL-MaLR:LTR 1.055113063663383 0.4056411265398226 1.3791217686462889 545.0 AluSp_dup17164:AluSp:Alu:SINE 1.197992642622956 0.1877517114460719 2.673721084193432 545.0 LTR2C_dup54:LTR2C:ERV1:LTR 1.3504274336354012 0.310476164059117 2.1208616985620017 545.0 AluSc8_dup1667:AluSc8:Alu:SINE 1.1918614317280491 0.0041581227828036 8.163068440173273 545.0 L1MB3_dup10872:L1MB3:L1:LINE 1.2171825369505551 0.2100936896188283 2.5344408056746257 544.0 MER11C_dup901:MER11C:ERVK:LTR 2.83033994851948 0.166133329013256 4.090561908486573 544.0 AluSc_dup22164:AluSc:Alu:SINE 1.4054874563499853 0.0403524238248074 5.122271434229003 543.0 AluSx_dup93726:AluSx:Alu:SINE 1.1385946362956103 0.1986652734758503 2.518842590745651 542.0 THE1B_dup12571:THE1B:ERVL-MaLR:LTR 1.552208386485506 0.2246707826834702 2.788437828146691 542.0 MER51E_dup213:MER51E:ERV1:LTR 5.051184903586497 0.3253014843551329 3.9567725434613 540.0 AluY_dup21650:AluY:Alu:SINE 1.7305663304540466 0.0095049074282098 7.508355947926421 540.0 AluY_dup2542:AluY:Alu:SINE 1.4608723881225345 0.005047263529721 8.177113029112082 540.0 AluY_dup35560:AluY:Alu:SINE 1.034749572607745 0.1269082915010166 3.0274234174206245 539.0 SVA_D_dup555:SVA_D:SVA:Retroposon 1.1397677004280624 0.1893469899851902 2.589635421967176 539.0 AluSp_dup41482:AluSp:Alu:SINE 1.4120269902709124 0.0167584010197382 6.3967393523248655 538.0 Harlequin-int_dup68:Harlequin-int:ERV1:LTR 5.729070893843701 0.4316687424735471 3.7303046555399866 538.0 L1MA2_dup3202:L1MA2:L1:LINE 1.0687626896456006 0.0824803516969858 3.6957472549143016 537.0 LTR16D_dup814:LTR16D:ERVL:LTR 1.3586067015104653 0.1292670517905187 3.3937013695565263 537.0 AluSx_dup105155:AluSx:Alu:SINE 1.1565915002152225 0.0067619152491489 7.418231755333021 537.0 LTR56_dup514:LTR56:ERV1:LTR 1.2445060766745144 0.0094757932799876 7.037110833710583 536.0 LTR2B_dup112:LTR2B:ERV1:LTR 5.926376654692898 0.2101401634115403 4.8177264895009 534.0 AluSx1_dup71086:AluSx1:Alu:SINE 1.4958157148405338 0.1211922052499356 3.625563628783227 534.0 AluSx4_dup3234:AluSx4:Alu:SINE 1.1872008178167732 0.3747890471528333 1.6634132935290502 534.0 AluJr_dup72800:AluJr:Alu:SINE 1.1312888764182183 0.1893768988027336 2.578635111780786 533.0 SVA_D_dup1229:SVA_D:SVA:Retroposon 1.7419267052954357 0.476847412502663 1.869084327326041 532.0 MER20_dup928:MER20:hAT-Charlie:DNA 4.260113295583429 0.2390542049560142 4.155482110732464 532.0 HAL1ME_dup4160:HAL1ME:L1:LINE 1.3166862076939134 0.4397212478800508 1.5822504116858338 532.0 MLT1K_dup3664:MLT1K:ERVL-MaLR:LTR 1.2380936274962098 0.3957006035735846 1.645639247595219 532.0 AluSc_dup13227:AluSc:Alu:SINE 1.2125938355165586 0.0424703548793335 4.835496419296875 531.0 MLT1K_dup3665:MLT1K:ERVL-MaLR:LTR 1.199867985905516 0.4807130236944626 1.3196278884395531 529.0 AluJr_dup25099:AluJr:Alu:SINE 1.4449954541618282 0.000819926184699 10.78328329927014 529.0 MLT1H1_dup732:MLT1H1:ERVL-MaLR:LTR 1.2224264237089786 0.3359740496892093 1.8633259237620967 528.0 L1PA6_dup2643:L1PA6:L1:LINE 2.6554835312788407 0.19822291764206 3.743778906992268 527.0 MER81_dup235:MER81:hAT-Blackjack:DNA 2.3408081376816128 0.1081369337007162 4.436075431455797 526.0 AluSp_dup48944:AluSp:Alu:SINE 3.244338122521187 0.3319044745033751 3.2890841999388045 526.0 AluSg4_dup1428:AluSg4:Alu:SINE 3.5560241205133405 0.0041097714685895 9.75699122224117 526.0 L1MC_dup1401:L1MC:L1:LINE 3.2121118451422177 0.3724782908326317 3.1082938796211783 524.0 L1PA5_dup4809:L1PA5:L1:LINE 2.49433795021506 0.1855937726213876 3.748436736274513 523.0 AluSz_dup29988:AluSz:Alu:SINE 1.9598283777352064 0.200378819868662 3.2899253948079368 523.0 LTR10G_dup53:LTR10G:ERV1:LTR 12.182106919702608 0.36915125031877 5.044407816637852 521.0 AluSq2_dup18060:AluSq2:Alu:SINE 1.0781909030027768 0.0990166627229545 3.444797506844965 520.0 AluJb_dup38353:AluJb:Alu:SINE 1.6591957272591058 0.0503640663441387 5.041945504324082 520.0 Harlequin-int_dup161:Harlequin-int:ERV1:LTR 1.472732162629612 0.2716421829311496 2.438715643369702 519.0 AluJr_dup4182:AluJr:Alu:SINE 2.0532284082765138 0.1810427427678674 3.503491875204113 519.0 AluSz_dup29985:AluSz:Alu:SINE 1.1284713682200476 0.0524954035174949 4.426034898104952 518.0 MER30_dup2921:MER30:hAT-Charlie:DNA 1.0521775288844446 0.481974385668547 1.126349762037652 518.0 L1PA5_dup4810:L1PA5:L1:LINE 1.2616485078629056 0.3642032674974997 1.792494264233886 518.0 SVA_D_dup72:SVA_D:SVA:Retroposon 1.5182746993924865 0.0517021596825601 4.876064483514697 517.0 AluSq2_dup18061:AluSq2:Alu:SINE 1.573675652139869 0.1342600248197837 3.551036500495393 516.0 LTR85b_dup84:LTR85b:Gypsy:LTR 1.463416460995286 0.1463995263453968 3.3213576008631 515.0 AluSx3_dup9866:AluSx3:Alu:SINE 1.41679849767849 0.1210908915224006 3.5484723329639665 514.0 MER83C_dup5:MER83C:ERV1:LTR 1.8423962139769985 0.1786861324868675 3.366083772748645 512.0 MER72B_dup8:MER72B:ERV1:LTR 1.379536896719742 0.1593671915957709 3.1137574810543733 512.0 AluSg7_dup2598:AluSg7:Alu:SINE 1.2705868685256003 0.1210314063817212 3.392041648683109 511.0 AluSc8_dup6695:AluSc8:Alu:SINE 1.1494782191594122 0.0667299481532286 4.106500936313207 511.0 Tigger4_dup110:Tigger4:TcMar-Tigger:DNA 1.379147732275051 0.069581210185122 4.308935423149909 510.0 Harlequin-int_dup415:Harlequin-int:ERV1:LTR 3.5113667199124428 0.2933300422967718 3.581435934371497 510.0 Tigger4_dup108:Tigger4:TcMar-Tigger:DNA 1.2682441696289832 0.0607853926963402 4.3829640458205 509.0 L1PB1_dup5905:L1PB1:L1:LINE 2.6541265065645487 0.2056128638309657 3.6902347048022617 508.0 Harlequin-int_dup204:Harlequin-int:ERV1:LTR 1.0933109737836662 0.1073174503437065 3.348747219971372 507.0 MER4A1_dup1701:MER4A1:ERV1:LTR 2.911195896019217 0.1586828425988767 4.197393870528141 507.0 AluSx_dup86758:AluSx:Alu:SINE 1.5617002223941947 0.0046002397019874 8.407192794070514 506.0 Tigger4_dup106:Tigger4:TcMar-Tigger:DNA 1.383207119521468 0.099917421413694 3.7911371440551447 505.0 HERV30-int_dup42:HERV30-int:ERV1:LTR 3.1488887849729403 0.0885907607063529 5.151542748563606 503.0 Harlequin-int_dup159:Harlequin-int:ERV1:LTR 1.0682338961759252 0.4897717427831806 1.1250461226797694 503.0 MER4-int_dup2271:MER4-int:ERV1:LTR 1.5163443321470689 0.1446850670061226 3.389609464913569 499.0 LTR6B_dup144:LTR6B:ERV1:LTR 1.4716467748960644 0.0519581292241098 4.823938139784743 499.0 AluSp_dup48932:AluSp:Alu:SINE 1.9673184107865973 0.0572182321373349 5.103611743073661 488.0 LTR2B_dup244:LTR2B:ERV1:LTR 1.1082059274588327 0.0470725896570393 4.557194954682786 483.0 AluSp_dup17866:AluSp:Alu:SINE 1.1465721865576504 0.2438156817225686 2.2334643625812878 483.0 L1MC4_dup1029:L1MC4:L1:LINE 5.8914308902333445 0.2987763344361531 4.301480289013599 481.0 LTR6A_dup176:LTR6A:ERV1:LTR 1.0547825347128863 0.008217839238723 7.00397076466425 479.0 LTR25-int_dup264:LTR25-int:ERV1:LTR 1.4109858348274371 0.1346052773305831 3.3898966260707275 478.0 AluSx_dup53127:AluSx:Alu:SINE 1.3304597169347476 0.0203814235818981 6.028526196533424 460.0 AluJb_dup51193:AluJb:Alu:SINE 1.9033349471807537 0.2175912620867679 3.1288369402457423 454.0 UCON132b_dup530:UCON132b:hAT-Tip100:DNA 6.402120295601801 0.0177999349535262 8.490534005952039 448.0 AluY_dup7324:AluY:Alu:SINE 1.6729445159245224 0.0815861706738351 4.357921160416919 447.0 AluSq_dup14889:AluSq:Alu:SINE 2.5880916159954994 0.1204504878879029 4.425376545898898 430.0 AluJb_dup87692:AluJb:Alu:SINE 2.3769892337182315 0.000958979254526 11.275348142387925 429.0 LTR85c_dup1058:LTR85c:Gypsy:LTR 3.138796479891842 0.0146543523728287 7.742738465442597 422.0 UCON132b_dup532:UCON132b:hAT-Tip100:DNA 6.402120295601801 0.0128613141713395 8.959367910068641 405.0 L1ME3G_dup7022:L1ME3G:L1:LINE 1.0032156858199794 0.0099297200670075 6.658663048715515 403.0 FLAM_A_dup2352:FLAM_A:Alu:SINE 1.3406160302429109 0.0050700948040176 8.046667650606098 398.0 HAL1_dup7515:HAL1:L1:LINE 1.1112681526725496 0.2019510350355641 2.460129540564805 397.0 L1PA8_dup6704:L1PA8:L1:LINE 1.3974352731973467 0.0511487805004809 4.771937807878199 394.0 AluSq_dup14867:AluSq:Alu:SINE 2.6241922879508985 0.0005742119048697 12.158002575417266 393.0 FLAM_C_dup5757:FLAM_C:Alu:SINE 3.6447899782685136 0.0063928179838352 9.155167951938282 391.0 AluSx4_dup8817:AluSx4:Alu:SINE 3.665324305094996 0.0033292417541647 10.10453150108911 389.0 AluSx1_dup75655:AluSx1:Alu:SINE 1.6183899464348912 0.0284294000555966 5.831031798471356 385.0 AluJr_dup53125:AluJr:Alu:SINE 2.202476802206201 0.0010588994317264 11.022345531738118 382.0 AluJb_dup122300:AluJb:Alu:SINE 3.2918198614619207 1e-05 18.32852586363308 377.0 LTR76_dup92:LTR76:ERV1:LTR 5.102752780673426 0.0002566290180909 14.27930381587758 372.0 HAL1_dup18235:HAL1:L1:LINE 1.3556599415532615 0.000732007004055 10.854850260072489 371.0 FLAM_C_dup17204:FLAM_C:Alu:SINE 1.8915328069363548 0.0005412630791814 11.770938196591253 368.0 MLT1J2_dup766:MLT1J2:ERVL-MaLR:LTR 1.1054233778281533 0.0010663014491379 10.017767959816176 367.0 AluSq_dup14759:AluSq:Alu:SINE 2.0509629316613145 0.0072442266826568 8.145254010909813 356.0 LTR16E2_dup1999:LTR16E2:ERVL:LTR 7.273979045083793 0.0001284221296633 15.789563320560845 342.0 AluSq_dup14746:AluSq:Alu:SINE 1.8628613058323051 0.0022069248671883 9.72126703591258 337.0