Index of /public/yarmarkovichlab/ImmunoVerse/database

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]uniprot_reviewed_curated_addition.fasta2025-04-08 15:26 14M 
[ ]tmp_prelift.bed2025-04-08 15:29 324M 
[TXT]tcga_t2t_coord_to_uid.txt2025-04-08 15:29 310M 
[ ]tcga_matched_control_junction_count.h5ad2025-04-08 15:28 1.8G 
[DIR]t2t_pathogen_intron/2025-04-08 15:51 -  
[TXT]t2t_normal_meta.txt2025-04-08 15:31 1.9K 
[TXT]splice_erv_db.txt2025-04-08 15:34 156  
[TXT]snaf_unmapped.txt2025-04-08 15:28 546K 
[ ]snaf_postlift.bed2025-04-08 15:28 16M 
[ ]redit_postlift.bed.gz.tbi2025-04-10 17:22 1.2M 
[ ]redit_postlift.bed.gz2025-04-08 15:27 114M 
[TXT]proteomes_AND_proteome_type_2_2023_10_16.tsv2025-04-08 15:29 12M 
[TXT]proteomes_AND_proteome_type_1_2023_10_16.tsv2025-04-08 15:29 2.2M 
[ ]nuORF_seq.fasta2025-04-08 15:32 16M 
[TXT]nuORF.txt2025-04-08 15:25 58M 
[TXT]normal_pathogen.txt2025-04-08 15:31 2.0M 
[TXT]normal_intron.txt2025-04-08 15:31 79M 
[DIR]mqpars/2025-04-08 15:57 -  
[DIR]mouse_genome_index_mm39/2025-04-08 15:04 -  
[ ]mm39.ncbiRefSeq.gtf2025-04-08 15:03 534M 
[ ]mm39.fa2025-04-08 15:03 2.6G 
[TXT]meta.txt2025-04-08 15:24 11M 
[ ]liftOver2025-04-08 15:27 33M 
[DIR]kraken2_db/2025-04-08 15:12 -  
[ ]kallisto_index2025-04-08 15:18 3.0G 
[TXT]junction2isoformDB_liftover.txt2025-04-08 15:34 40M 
[TXT]human_membrane_proteins_acc2ens.txt2025-04-08 15:25 1.5M 
[TXT]human_hg38_All_circRNA.csv2025-04-08 15:32 124M 
[DIR]human_genome_index/2025-04-08 15:03 -  
[ ]hs1ToHg38.over.chain.gz2025-04-08 15:27 2.7M 
[ ]hs1.fa.fai2025-04-09 10:22 787  
[ ]hs1.fa2025-04-08 15:10 3.0G 
[TXT]hla_ligand_atlas_now_0.01.txt2025-04-08 15:33 92M 
[ ]hgUnique.hg38.bed2025-04-08 15:29 14K 
[DIR]hg38_telocal_intron/2025-04-08 15:47 -  
[ ]hg38_rmsk_TE.gtf.locInd.locations2025-04-08 15:13 183M 
[ ]hg38_rmsk_TE.gtf.locInd2025-04-08 15:13 884M 
[TXT]hg38_ref_all.txt2025-04-08 15:13 72M 
[TXT]hg38_normal_meta.txt2025-04-08 15:30 1.9K 
[TXT]hg38_cds_final.txt2025-04-08 15:34 170M 
[ ]hg38ToHs1.over.chain.gz2025-04-08 15:27 2.6M 
[ ]hg38.knownGene.gtf2025-04-08 15:13 565M 
[ ]hg38.fa.fai2025-04-09 12:33 19K 
[ ]hg38.fa2025-04-08 15:13 3.0G 
[TXT]gtex_t2t_coord_to_uid.txt2025-04-08 15:28 136M 
[ ]gtex_gene_all.h5ad2025-04-08 15:24 3.8G 
[TXT]gene_model.txt2025-04-08 15:31 52M 
[ ]gencode.v36.transcripts.fa2025-04-08 15:04 389M 
[ ]gencode.v36.annotation.gtf2025-04-08 15:02 1.3G 
[TXT]gProfiler_hsapiens.csv2025-04-08 15:58 2.7M 
[TXT]full_results_XY_essential_tissues.txt2025-04-08 15:58 7.9M 
[TXT]final.txt2025-04-08 16:08 103K 
[ ]cosmic_postlift.bed.gz.tbi2025-04-10 17:22 37K 
[ ]cosmic_postlift.bed.gz2025-04-08 15:27 1.6M 
[ ]catLiftOffGenesV1.gtf2025-04-08 15:10 274M 
[ ]bulk-gex_v8_rna-seq_GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_median_tpm.gct2025-04-08 15:24 17M 
[TXT]blacklist_splicing.txt2025-04-08 15:28 26M 
[ ]annot.txt.gz.tbi2025-04-10 17:22 2.6M 
[ ]annot.txt.gz2025-04-08 15:26 9.3G 
[TXT]US_HLA_frequency.csv2025-04-08 15:58 1.9K 
[ ]T2T_CHM13_v2_rmsk_TE.gtf2025-04-08 15:46 589M 
[DIR]T2T-CHM13_CTAT_lib_Feb162023.plug-n-play/2025-04-08 15:16 -  
[DIR]STAR_index/2025-04-08 15:11 -  
[ ]ORFfinder2025-04-08 15:32 24M 
[ ]Homo_sapiens.GRCh38.pep.all.fa2025-04-08 15:26 80M 
[ ]Homo_sapiens.GRCh38.110.gtf2025-04-08 15:27 1.4G 
[TXT]HLA_aggregated.tsv2025-04-08 15:58 63M 
[ ]GTEx_junction_counts.h5ad2025-04-08 15:28 6.0G 
[ ]GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct2025-04-08 15:24 4.0G 
[ ]GRCh38.d1.vd1.fa2025-04-08 15:02 2.9G 
[TXT]Epitopes_In_Normal_Tissues.txt2025-04-08 15:33 6.9M 
[TXT]Epitopes_In_Cancer_Tissues.txt2025-04-08 15:32 12M 
[TXT]CRISPR_DepMap_Public_23Q4_Score_Chronos.csv2025-04-08 15:57 382M